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Oryza sativa
cluster # 12073 cluster # 12073       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12073#0 length = 1228 sequences # 9  
consensus_12073#1 length = 530 sequences # 1  

consensusID : consensus_12073#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1228
fasta sequence
                              [TTCCTCGAGCACTGTTGGCCTACTGGGTGCACAGCTCTTGTTCTCCATTAATCCAGCCGTGCGTGCAGTTGAGGTCCACCTGCTGCTGCTCTCTGTCTGCTCCCATCGAACAAATCAAGAACCACCCTCTCCACTCTCCAATCCAATCTCGAATAGGAAGAAGGATGCTTGGTTTTGCGCCGGCACCAGGCCGGCCGCTCTTCGTGCTCTTCGGTTCCTCCATCGTCCAGTTCAGCTTCAGCAATGGCGGATGGGGCGCTGCCCTTGCAGACATCTACGCTCGCAAGGCTGATATCCTTCTCAGAGGGTATATTGGTTGGAACTCAAGGCGCGCCCTTCAAGTCATTGACAAAATTTTTCCCAAGGATTCG-CCCGTGCAACCTTCTTTGGTAATAGTTTACTTTGGTGGCAATGATTCGGTTGCTGCCCATTCATCCGGCCTTGGACCTCATGTGCCACTAGAGGAGTACATAGACAACATGAGAAAGATCGCAGACCACCTGAAGAGCTTGTCTGAGAAGACCCGTGTCATCTTCCTCAGCTGCCCACCACTTAACGAGGAGACGCTCCGAAAATCAACCAGCACTGTCCTGAGTGAGATAGTGCGGACAAACGAAACTTGCCGCCTATACTCCGAAGCCTGTGTATCTCTATGCAAAGAGATGGACCTGAAGGTGGTTGATCTTTGGAATGCTATGCAGAAACGGGACGACTGGGCGACGGCCTGCTTCACGGATGGGCTTCATCTGTCTGAAGAAGGGAGCAAGATTGTTGTGGAAGAGATCCTGAGGATCCTCAAGGAGGCAGAGTGGGATCCATGCCTGCACTGGAAGGCGATGCCGACAGAGTTTGGGGAGGACTCACCCTATGATCTCGTCTCCTCCAGCGGCCAATCCACCGTCAACCCCTCCGACTGGACCTTCCACAGGACTATCCAATGGGACTGACCTTCCATTCGTCTCAATCTCAGTATCTCATGATGGAGCATATACATGCATGCTCCAACGTGCAACATTACATGCATGATTCATAATTAAGATCCCCTTCGGTCTTACTATATATGTAGGGGTCTAATGCTAGCTGATGACGAGGGGTCATGGATTAGGCTTCAGCTCGATCGAGCTGAAAAAAAATCAGATTTAGGATGATATTAACTGCTTTGCTCCCTGCCTGCTATATATCATAAGTGAGACAATGCACATGATTATCTCGCTATATACTATGTGAC]

[+] EMBL AK109413             [TTCCTCGAGCACTGTTGGCCTACTGGGTGCACAGCTCTTGTTCTCCATTAATCCAGCCGTGCGTGCAGTTGAGGTCCACCTGCTGCTGCTCTCTGTCTGCTCCCATCGAACAAATCAAGAACCACCCTCTCCACTCTCCAATCCAATCTCGAATAGGAAGAAGGATGCTTGGTTTTGCGCCGGCACCAGGCCGGCCGCTCTTCGTGCTCTTCGGTTCCTCCATCGTCCAGTTCAGCTTCAGCAATGGCGGATGGGGCGCTGCCCTTGCAGACATCTACGCTCGCAAGGCTGATATCCTTCTCAGAGGGTATATTGGTTGGAACTCAAGGCGCGCCCTTCAAGTCATTGACAAAATTTTTCCCAAGGATTCG CCCGTGCAACCTTCTTTGGTAATAGTTTACTTTGGTGGCAATGATTCGGTTGCTGCCCATTCATCCGGCCTTGGACCTCATGTGCCACTAGAGGAGTACATAGACAACATGAGAAAGATCGCAGACCACCTGAAGAGCTTGTCTGAGAAGACCCGTGTCATCTTCCTCAGCTGCCCACCACTTAACGAGGAGACGCTCCGAAAATCAACCAGCACTGTCCTGAGTGAGATAGTGCGGACAAACGAAACTTGCCGCCTATACTCCGAAGCCTGTGTATCTCTATGCAAAGAGATGGACCTGAAGGTGGTTGATCTTTGGAATGCTATGCAGAAACGGGACGACTGGGCGACGGCCTGCTTCACGGATGGGCTTCATCTGTCTGAAGAAGGGAGCAAGATTGTTGTGGAAGAGATCCTGAGGATCCTCAAGGAGGCAGAGTGGGATCCATGCCTGCACTGGAAGGCGATGCCGACAGAGTTTGGGGAGGACTCACCCTATGATCTCGTCTCCTCCAGCGGCCAATCCACCGTCAACCCCTCCGACTGGACCTTCCACAGGACTATCCAATGGGACTGACCTTCCATTCGTCTCAATCTCAGTATCTCATGATGGAGCATATACATGCATGCTCCAACGTGCAACATTACATGCATGATTCATAATTAAGATCCCCTTCGGTCTTACTATATATGTAGGGGTCTAATGCTAGCTGATGACGAGGGGTCATGGATTAGGCTTCAGCTCGATCGAGCTGAAAA                                                                                                   ]
[+] EMBL AK067429             [                               CAGCTCTTGTTCTCCATTAATCCAGCCGTGCGTGCAGTTGAGGTCCACCTGCTGCTGCTCTCTGTCTGCTCCCATCGAACAAATCAAGAACCACCCTCTCCACTCTCCAATCCAATCTCGAATAGGAAGAAGGATGCTTGGTTTTGCGCCGGCACCAGGCCGGCCGCTCTTCGTGCTCTTCGGTTCCTCCATCGTCCAGTTCAGCTTCAGCAATGGCGGATGGGGCGCTGCCCTTGCAGACATCTACGCTCGCAAGGCTGATATCCTTCTCAGAGGGTATATTGGTTGGAACTCAAGGCGCGCCCTTCAAGTCATTGACAAAATTTTTCCCAAGGATTCG CCCGTGCAACCTTCTTTGGTAATAGTTTACTTTGGTGGCAATGATTCGGTTGCTGCCCATTCATCCGGCCTTGGACCTCATGTGCCACTAGAGGAGTACATAGACAACATGAGAAAGATCGCAGACCACCTGAAGAGCTTGTCTGAGAAGACCCGTGTCATCTTCCTCAGCTGCCCACCACTTAACGAGGAGACGCTCCGAAAATCAACCAGCACTGTCCTGAGTGAGATAGTGCGGACAAACGAAACTTGCCGCCTATACTCCGAAGCCTGTGTATCTCTATGCAAAGAGATGGACCTGAAGGTGGTTGATCTTTGGAATGCTATGCAGAAACGGGACGACTGGGCGACGGCCTGCTTCACGGATGGGCTTCATCTGTCTGAAGAAGGGAGCAAGATTGTTGTGGAAGAGATCCTGAGGATCCTCAAGGAGGCAGAGTGGGATCCATGCCTGCACTGGAAGGCGATGCCGACAGAGTTTGGGGAGGACTCACCCTATGATCTCGTCTCCTCCAGCGGCCAATCCACCGTCAACCCCTCCGACTGGACCTTCCACAGGACTATCCAATGGGACTGACCTTCCATTCGTCTCAATCTCAGTATCTCATGATGGAGCATATACATGCATGCTCCAACGTGCAACATTACATGCATGATTCATAATTAAGATCCCCTTCGGTCTTACTATATATGTAGGGGTCTAATGCTAGCTGATGACGAGGGGTCATGGATTAGGCTTCAGCTCGATCGAGCTGAAAAAAAATCAGATTTAGGATGATATTAACTGCTTTGCTCCCTGCCTGCTATATATCATAAGTGAGACAATGCACATGATTATCTCGCTATATACTATGTGAC]
[+] EMBL CF332003             [                                                                           gagtagaaaGCTGCTCTCTGTCTGCTCCCATCGAACAAATCAAGAACCACCCTCTCCACTCTCCAATCCAATCTCGAATAGGAAGAAGGATGCTTGGTTTTGCGCCGGCACCAGGCCGGCCGCTCTTCGTGCTCTTCGGTTCCTCCATCGTCCAGTTCAGCTTCAGCAATGGCGGATGGGGCGCTGCCCTTGCAGACATCTACGCTCGCAAGGCTGATATCCTTCTCAGAGGGTATATTGGTTGGAACTCAAGGCGCGCCCTTCAAGTCATTGACAAAATTTTTCCCAAGGATTCG CCCGTGCAACCTTCTTTGGTAATAGTTTACTTTGGTGGCAATGATTCGGTTGCTGCCCATTCATCCGGCCTTGGACCTCATGTGCCACTAGAGGAGTACATAGACAACATGAGAAAGATCGCAGACCACCTGAAGAGCTTGTCTGAGAAGACCCGTGTCATCTTCCTCAGCTGCCCACCACTTAACGAGGAGACGCTCCGAAAATCAACCAGCACTGTCCTGAGTGAGATAGTGCGGACAAACGAAACTTGCCGCCTATACTCCGAAGCCTGTGTATCTCTATGCAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK062013             [                                                                                                                                                         TAGGAAGAAGGATGCTTGGTTTTGCGCCGGCACCAGGCCGGCCGCTCTTCGTGCTCTTCGGTTCCTCCATCGTCCAGTTCAGCTTCAGCAATGGCGGATGGGGCGCTGCCCTTGCAGACATCTACGCTCGCAAGGCTGATATCCTTCTCAGAGGGTATATTGGTTGGAACTCAAGGCGCGCCCTTCAAGTCATTGACAAAATTTTTCCCAAGGATTCG CCCGTGCAACCTTCTTTGGTAATAGTTTACTTTGGTGGCAATGATTCGGTTGCTGCCCATTCATCCGGCCTTGGACCTCATGTGCCACTAGAGGAGTACATAGACAACATGAGAAAGATCGCAGACCACCTGAAGAGCTTGTCTGAGAAGACCCGTGTCATCTTCCTCAGCTGCCCACCACTTAACGAGGAGACGCTCCGAAAATCAACCAGCACTGTCCTGAGTGAGATAGTGCGGACAAACGAAACTTGCCGCCTATACTCCGAAGCCTGTGTATCTCTATGCAAAGAGATGGACCTGAAGGTGGTTGATCTTTGGAATGCTATGCAGAAACGGGACGACTGGGCGACGGCCTGCTTCACGGATGGGCTTCATCTGTCTGAAGAAGGGAGCAAGATTGTTGTGGAAGAGATCCTGAGGATCCTCAAGGAGGCAGAGTGGGATCCATGCCTGCACTGGAAGGCGATGCCGACAGAGTTTGGGGAGGACTCACCCTATGATCTCGTCTCCTCCAGCGGCCAATCCACCGTCAACCCCTCCGACTGGACCTTCCACAGGACTATCCAATGGGACTGACCTTCCATTCGTCTCAATCTCAGTATCTCATGATGGAGCATATACATGCATGCTCCAACGTGCAACATTACATGCATGATTCATAATTAAGATCCCCTTCGGTCTTACTATATATGTAGGGGTCTAATGCTAGCTGATGACGAGGGGTCATGGATTAGGCTTCAGCTCGATCGAGCTGAAAAAAAATCAGATTTAGGATGATATTAACTGCTTTGCTCCCTGCCTGCTATATATCATAAGTGAGACAATGCACATGA                        ]
[+] EMBL BP184654             [                                                                                                                                                                           GTTTTGCGCCGGCACCAGGCCGGCCGCTCTTCGTGCTCTTCGGTTCCTCCATCGTCCAGTTCAGCTTCAGCAATGGCGGATGGGGCGCTGCCCTTGCAGACATCTACGCTCGCAAGGCTGATATCCTTCTCAGAGGGTATATTGGTTGGAACTCAAGGCGCGCCCTTCAAGTCATTGACAAAATTTTTCCCAAGGATTCG CCCGTGCAACCTTCTTTGGTAATAGTTTACTTTGGTGGCAATGATTCGGTTGCTGCCCATTCATCCGGCCTTGGACCTCATGTGCCACTAGAGGAGTACATAGACAACATGAGAAAGATCGCAGACCACCTGAAGAGCTTGTCTGAGAAGACCCGTGTCATCTTCCTCAGCTGCCCACCACTTAACGAGGAGACGCTCCGAAAATCAACCAGCACTGTCCTGAGTGAGATAGTGCGGACAAACGAAACTTGCCGCCTATACTCCGAAGCCTGTGTATCTCTATGCAAAGAGATGGACCTGAAGGTGGTTGATCTTTGGAATGCTATGCAGAAACGGGACGACTGGGCGACGGCCTGCTTCACGGATGGGCTTCATCTGTCTGAAGAAGGGAGCAAGATTGTTGTGGAAGAGATCCTGAGGATCCTCAAGGAGGCAGAGTGGGATCCATGCCTGCACTGGAAGGCGATGCCGACA                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AB110185             [                                                                                                                                                                           GTTTTGCGCCGGCACCAGGCCGGCCGCTCTTCGTGCTCTTCGGTTCCTCCATCGTCCAGTTCAGCTTCAGCAATGGCGGATGGGGCGCTGCCCTTGCAGACATCTACGCTCGCAAGGCTGATATCCTTCTCAGAGGGTATATTGGTTGGAACTCAAGGCGCGCCCTTCAAGTCATTGACAAAATTTTTCCCAAGGATTCG CCCGTGCAACCTTCTTTGGTAATAGTTTACTTTGGTGGCAATGATTCGGTTGCTGCCCATTCATCCGGCCTTGGACCTCATGTGCCACTAGAGGAGTACATAGACAACATGAGAAAGATCGCAGACCACCTGAAGAGCTTGTCTGAGAAGACCCGTGTCATCTTCCTCAGCTGCCCACCACTTAACGAGGAGACGCTCCGAAAATCAACCAGCACTGTCCTGAGTGAGATAGTGCGGACAAACGAAACTTGCCGCCTATACTCCGAAGCCTGTGTATCTCTATGCAAAGAGATGGACCTGAAGGTGGTTGATCTTTGGAATGCTATGCAGAAACGGGACGACTGGGCGACGGCCTGCTTCACGGATGGGCTTCATCTGTCTGAAGAAGGGAGCAAGATTGTTGTGGAAGAGATCCTGAGGATCCTCAAGGAGGCAGAGTGGGATCCATGCCTGCACTGGAAGGCGATGCCGACAGAGTTTGGGGAGGACTCACCCTATGATCTCGTCTCCTCCAGCGGCCAATCCACCGTCAACCCCTCCGACTGGACCTTCCACAGGACTATCCAATGGGACTGACCTTCCATTCGTCTCAATCTCAGTATCTCATGATGGAGCATATACATGCATGCTCCAACGTGCAACATTACATGCATGATTCATAATTAAGATCCCCTTCGGTCTTACTATATATGTAGGGGTCTAATGCTAGCTGATGACGAGGGGTCATGGATTAGGCTTCAGCTCGATCGAGCTGAAAAAAAATCAGATTTAGGATGATATTAACTGCTTTGCTCCCTGCCTGCTATATATCATAAGTGAGACAATGCACATGATTATCTCGCTATATACTATGTGAC]
[-] EMBL CB682872             [                                                                                                                                                                                                                                                                                                                                                                              ATTCGCCCCGTGCAACCTTCTTTGGTAATAGTTTACTTTGGTGGCAATGATTCGGTTGCTGCCCATTCATCCGGCCTTGGACCTCATGTGCCACTAGAGGAGTACATAGACAACATGAGAAAGATCGCAGACCACCTGAAGAGCTTGTCTGAGAAGACCCGTGTCATCTTCCTCAGCTGCCCACCACTTAACGAGGAGACGCTCCGAAAATCAACCAGCACTGTCCTGAGTGAGATAGTGCGGACAAACGAAACTTGCCGCCTATACTCCGAAGCCTGTGTATCTCTATGCAAAGAGATGGACCTGAAGGTGGTTGATCTTTGGAATGCTATGCAGAAACGGGACGACTGGGCGACGGCCTGCTTCACGGATGGGCTTCATCTGTCTGAAGAAGGGAGCAAGATTGTTGTGGAAGAGATCCTGAGGATCCTCAAGGAGGCAGAGTGGGATCCATGCCTGCACTGGAAGGCGATGCCGACAGAGTTTGGGGAGGACTCACCCTATGATCTCGTCTCCTCCAGCGGCCAATCCACCGTCAACCCCTCCGACTGGACCTTCCACAGGACTATCCAATGGGACTGACCTTCCATTCGTCTCAATCTCAGTATCTCATGATGGAGCATATACATGCATGCTCCAACGTGCAACATTACATGCATGATTCATAATTAAGATCCCCTTCGGTCTTACTATATATGTAGGGGTCTAATGCTAGCTGATGACGAGGGGTCATGGATTAGGCTTCAGCTCGATCGAGCTGAAAAAAAATCAGATTTAGGATGATATTAACTGCTTTGCTCCCTGCCTGCTATATATCATAAGTGAGACAATGCACATGATTATCTCGCTATAaaaaaga    ]
[-] EMBL CF332004             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCTTTGGAATGCTATGCAGAAACGGGACGACTGGGCGACGGCCTGCTTCACGGATGGGCTTCATCTGTCTGAAGAAGGGAGCAAGATTGTTGTGGAAGAGATCCTGAGGATCCTCAAGGAGGCAGAGTGGGATCCATGCCTGCACTGGAAGGCGATGTCGACAGAGTTTGGGGAGGACTCACCCTATGATCTCGTCTCCTCCAGCGGCCAATCCACCGTCAACCCCTCTGACTGGACCTTCCACAGGACTATCCAATGGGACTGACCTTCCATTCGTCTCAATCTCAGTATCTCATGATGGAGCATATACATGCATGCTCCAACGTGCAACATTACATGCATGATTCATAATTAAGATCCCCTTCGGTCTTACTATATATGTAGGGGTCTAATGCTAGCTGACGACGAGGGGTCATGGATTAGGCTTCAGCTCGAGCGAGCTGAAAAAAAATCAGATTTAGGATGATATTAACTGCTTTGCTCCCTGCCTGCTATATATCATAAGTGAGACAATGCACATGATTATCTCGCTATAaaaaaaa    ]
[+] EMBL AA750973             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACGAGGGGTCATGGATTAGGCTTCAGCTCGA CGAGCT AAAAAAAATCAGATTTAGGATGATATTAACTGCTTTGCTCCCTGCCTGCTATATATCAT AG GAGACAA GCAC TGATg                      ]


>consensus_12073#0 TTCCTCGAGCACTGTTGGCCTACTGGGTGCACAGCTCTTGTTCTCCATTAATCCAGCCGT GCGTGCAGTTGAGGTCCACCTGCTGCTGCTCTCTGTCTGCTCCCATCGAACAAATCAAGA ACCACCCTCTCCACTCTCCAATCCAATCTCGAATAGGAAGAAGGATGCTTGGTTTTGCGC CGGCACCAGGCCGGCCGCTCTTCGTGCTCTTCGGTTCCTCCATCGTCCAGTTCAGCTTCA GCAATGGCGGATGGGGCGCTGCCCTTGCAGACATCTACGCTCGCAAGGCTGATATCCTTC TCAGAGGGTATATTGGTTGGAACTCAAGGCGCGCCCTTCAAGTCATTGACAAAATTTTTC CCAAGGATTCGCCCGTGCAACCTTCTTTGGTAATAGTTTACTTTGGTGGCAATGATTCGG TTGCTGCCCATTCATCCGGCCTTGGACCTCATGTGCCACTAGAGGAGTACATAGACAACA TGAGAAAGATCGCAGACCACCTGAAGAGCTTGTCTGAGAAGACCCGTGTCATCTTCCTCA GCTGCCCACCACTTAACGAGGAGACGCTCCGAAAATCAACCAGCACTGTCCTGAGTGAGA TAGTGCGGACAAACGAAACTTGCCGCCTATACTCCGAAGCCTGTGTATCTCTATGCAAAG AGATGGACCTGAAGGTGGTTGATCTTTGGAATGCTATGCAGAAACGGGACGACTGGGCGA CGGCCTGCTTCACGGATGGGCTTCATCTGTCTGAAGAAGGGAGCAAGATTGTTGTGGAAG AGATCCTGAGGATCCTCAAGGAGGCAGAGTGGGATCCATGCCTGCACTGGAAGGCGATGC CGACAGAGTTTGGGGAGGACTCACCCTATGATCTCGTCTCCTCCAGCGGCCAATCCACCG TCAACCCCTCCGACTGGACCTTCCACAGGACTATCCAATGGGACTGACCTTCCATTCGTC TCAATCTCAGTATCTCATGATGGAGCATATACATGCATGCTCCAACGTGCAACATTACAT GCATGATTCATAATTAAGATCCCCTTCGGTCTTACTATATATGTAGGGGTCTAATGCTAG CTGATGACGAGGGGTCATGGATTAGGCTTCAGCTCGATCGAGCTGAAAAAAAATCAGATT TAGGATGATATTAACTGCTTTGCTCCCTGCCTGCTATATATCATAAGTGAGACAATGCAC ATGATTATCTCGCTATATACTATGTGAC



consensusID : consensus_12073#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence
                              [CNNAANGNGGAGTACATANAGTCGNNGTNATCGCAGACACCTGAAGAGCTTGTCTGAGAAAGACCCGTGTCATCTTCCTCAGCTGCCCACCACTTAACGAGGGAGACGCTCCGAAAAATCAACCAGCACTGTCCTGAAGTGAGATAGTGCGGACAAACGAAAACTTGCCGCCTATACTCCGAAAGCCTGTGTNTCTCTATGCNAAAGAGATGGACCTGAAGGTGGGTTGATCTTTGGGAATGCTATGCNANAAACCGGGACGANTGGGGCGAACGGGCTGCTTCNCCGGATGGGGCTTCCATCTGTCTGAAAGAAAGGGGAGCAAGAATTGTTTGTGGGAAGAAAATCCTGANGGATCCTCNNGGAAGGCNGAANTGGGGATCCATGCCTGCNCTGGGNATGGNGAATGCCCAACAGAAATTTGGGGGAAGGANTCNCCCCTATGAATCTCCGTCCCTCCCAGCGGGGCAATCCCCCCGTCAACCCCCCCCGAACTGGGACCCTTCCCNCAGGGACTTTCCCNATGGGGA]

[+] EMBL AA754608             [CNNAANGNGGAGTACATANAGTCGNNGTNATCGCAGACACCTGAAGAGCTTGTCTGAGAAAGACCCGTGTCATCTTCCTCAGCTGCCCACCACTTAACGAGGGAGACGCTCCGAAAAATCAACCAGCACTGTCCTGAAGTGAGATAGTGCGGACAAACGAAAACTTGCCGCCTATACTCCGAAAGCCTGTGTNTCTCTATGCNAAAGAGATGGACCTGAAGGTGGGTTGATCTTTGGGAATGCTATGCNANAAACCGGGACGANTGGGGCGAACGGGCTGCTTCNCCGGATGGGGCTTCCATCTGTCTGAAAGAAAGGGGAGCAAGAATTGTTTGTGGGAAGAAAATCCTGANGGATCCTCNNGGAAGGCNGAANTGGGGATCCATGCCTGCNCTGGGNATGGNGAATGCCCAACAGAAATTTGGGGGAAGGANTCNCCCCTATGAATCTCCGTCCCTCCCAGCGGGGCAATCCCCCCGTCAACCCCCCCCGAACTGGGACCCTTCCCNCAGGGACTTTCCCNATGGGGA]


>consensus_12073#1 CNNAANGNGGAGTACATANAGTCGNNGTNATCGCAGACACCTGAAGAGCTTGTCTGAGAA AGACCCGTGTCATCTTCCTCAGCTGCCCACCACTTAACGAGGGAGACGCTCCGAAAAATC AACCAGCACTGTCCTGAAGTGAGATAGTGCGGACAAACGAAAACTTGCCGCCTATACTCC GAAAGCCTGTGTNTCTCTATGCNAAAGAGATGGACCTGAAGGTGGGTTGATCTTTGGGAA TGCTATGCNANAAACCGGGACGANTGGGGCGAACGGGCTGCTTCNCCGGATGGGGCTTCC ATCTGTCTGAAAGAAAGGGGAGCAAGAATTGTTTGTGGGAAGAAAATCCTGANGGATCCT CNNGGAAGGCNGAANTGGGGATCCATGCCTGCNCTGGGNATGGNGAATGCCCAACAGAAA TTTGGGGGAAGGANTCNCCCCTATGAATCTCCGTCCCTCCCAGCGGGGCAATCCCCCCGT CAACCCCCCCCGAACTGGGACCCTTCCCNCAGGGACTTTCCCNATGGGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12073#0      TTCCTCGAGCACTGTTGGCCTACTGGGTGCACAGCTCTTGTTCTCCATTAATCCAGCCGT 60
consensus_12073#1      ------------------------------------------------------------
                                                                                   

consensus_12073#0      GCGTGCAGTTGAGGTCCACCTGCTGCTGCTCTCTGTCTGCTCCCATCGAACAAATCAAGA 120
consensus_12073#1      ------------------------------------------------------------
                                                                                   

consensus_12073#0      ACCACCCTCTCCACTCTCCAATCCAATCTCGAATAGGAAGAAGGATGCTTGGTTTTGCGC 180
consensus_12073#1      ------------------------------------------------------------
                                                                                   

consensus_12073#0      CGGCACCAGGCCGGCCGCTCTTCGTGCTCTTCGGTTCCTCCATCGTCCAGTTCAGCTTCA 240
consensus_12073#1      ------------------------------------------------------------
                                                                                   

consensus_12073#0      GCAATGGCGGATGGGGCGCTGCCCTTGCAGACATCTACGCTCGCAAGGCTGATATCCTTC 300
consensus_12073#1      ------------------------------------------------------------
                                                                                   

consensus_12073#0      TCAGAGGGTATATTGGTTGGAACTCAAGGCGCGCCCTTCAAGTCATTGACAAAATTTTTC 360
consensus_12073#1      ------------------------------------------------------------
                                                                                   

consensus_12073#0      CCAAGGATTCGCCCGTGCAACCTTCTTTGGTAATAGTTTACTTTGGTGGCAATGATTCGG 420
consensus_12073#1      ------------------------------------------------------------
                                                                                   

consensus_12073#0      TTGCTGCCCATTCATCCGGCCTTGGACCTCATGTGCCACTAGAGGAGTACATAGACAACA 480
consensus_12073#1      -----------------------------------CNNAANGNGGAGTACATANA----G 21
                                                          *     * ********** *     

consensus_12073#0      TGAGAAAGATCGCAGACCACCTGAAGAGCTTGTCTGAGAA-GACCCGTGTCATCTTCCTC 539
consensus_12073#1      TCGNNGTNATCGCAGAC-ACCTGAAGAGCTTGTCTGAGAAAGACCCGTGTCATCTTCCTC 80
                       *       ********* ********************** *******************

consensus_12073#0      AGCTGCCCACCACTTAACGAGG-AGACGCTCCGAAAA-TCAACCAGCACTGTCCTGA-GT 596
consensus_12073#1      AGCTGCCCACCACTTAACGAGGGAGACGCTCCGAAAAATCAACCAGCACTGTCCTGAAGT 140
                       ********************** ************** ******************* **

consensus_12073#0      GAGATAGTGCGGACAAACGAAA-CTTGCCGCCTATACTCCGAA-GCCTGTGTATCTCTAT 654
consensus_12073#1      GAGATAGTGCGGACAAACGAAAACTTGCCGCCTATACTCCGAAAGCCTGTGTNTCTCTAT 200
                       ********************** ******************** ******** *******

consensus_12073#0      GCAAA-GAGATGGACCTGAAGGTGG-TTGATCTTTGG-AATGCTATGCAGAAA--CGGGA 709
consensus_12073#1      GCNAAAGAGATGGACCTGAAGGTGGGTTGATCTTTGGGAATGCTATGCNANAAACCGGGA 260
                       ** ** ******************* *********** **********   **  *****

consensus_12073#0      CGACTGGGC--GACGGCCTGCTTCAC-GGATGGG--CTTCATCTGTCTGAAGAA---GGG 761
consensus_12073#1      CGANTGGGGCGAACGGGCTGCTTCNCCGGATGGGGCTTCCATCTGTCTGAAAGAAAGGGG 320
                       *** ****    **** ******* * *******   * ************  *   ***

consensus_12073#0      AGCAAGA-TTGTT---GTGGAAGAGATCCTGAGG-ATCCTCAAGGA-GGCAGAGT--GGG 813
consensus_12073#1      AGCAAGAATTGTTTGTGGGAAGAAAATCCTGANGGATCCTCNNGGAAGGCNGAANTGGGG 380
                       ******* *****   * * *  * ******* * ******  *** *** **    ***

consensus_12073#0      ATCCATGCCTGCACTGGAA---GGCGATGCC-GACAGAGTTT---GGGGAGGACTCACCC 866
consensus_12073#1      ATCCATGCCTGCNCTGGGNATGGNGAATGCCCAACAGAAATTTGGGGGAAGGANTCNCCC 440
                       ************ ****     *   *****  *****  **   *** **** ** ***

consensus_12073#0      -TATGA--TCTCGTCTCCTCCAGCGG--CCAATCCACCGTCAACCCCTCC--GACTGGA- 918
consensus_12073#1      CTATGAATCTCCGTCCCTCCCAGCGGGGCAATCCCCCCGTCAACCCCCCCCGAACTGGGA 500
                        *****     **** *  *******  * *  ** *********** **   *****  

consensus_12073#0      --CCTTCCACAGGA--CTATCCAATGGGACTGACCTTCCATTCGTCTCAATCTCAGTATC 974
consensus_12073#1      CCCTTCCCNCAGGGACTTTCCCNATGGGGA------------------------------ 530
                         * * ** ****    *  ** *****                                

consensus_12073#0      TCATGATGGAGCATATACATGCATGCTCCAACGTGCAACATTACATGCATGATTCATAAT 1034
consensus_12073#1      ------------------------------------------------------------
                                                                                   

consensus_12073#0      TAAGATCCCCTTCGGTCTTACTATATATGTAGGGGTCTAATGCTAGCTGATGACGAGGGG 1094
consensus_12073#1      ------------------------------------------------------------
                                                                                   

consensus_12073#0      TCATGGATTAGGCTTCAGCTCGATCGAGCTGAAAAAAAATCAGATTTAGGATGATATTAA 1154
consensus_12073#1      ------------------------------------------------------------
                                                                                   

consensus_12073#0      CTGCTTTGCTCCCTGCCTGCTATATATCATAAGTGAGACAATGCACATGATTATCTCGCT 1214
consensus_12073#1      ------------------------------------------------------------
                                                                                   

consensus_12073#0      ATATACTATGTGAC 1228
consensus_12073#1      --------------
                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)