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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12077#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1531 fasta sequence
[CTGGTGACACTCACCTTGGTGGTGATGACTTTGACAAGAGGGTTGTTGATTGGCTGGCGGGGAACTTCAAGAATGATGAAGGTATTGACCTACTAAAAGACAAGCAGGCCTTGCAACGTCTTACAGAAGCAGCTGAGAAGGCAAAGATGGAGCTATCATCCTTGACCCAAACAAATATCAGTTTACCCTTCATTACAGCTACTGCTGATGGGCCCAAGCATATCGAGACAACTCTTACCAGGGCTAAATTTGAGGAGCTATGTTCAGATCTTCTTGACAGGTTGAGGACCCCTGTGGACAATGCCCTCAGAGATGCAAAGTTGTCATTTAAAGACATAGATGAGGTGATCCTTGTCGGTGGCTCCACCAGAATTCCAGCTGTGCAGGATCTTGTGAAGAAAATGACTGGAAAGGACCCCAATGTGACTGTCAACCCTGATGAGGTTGTTGCACTTGGAGCAGCTGTTCAGGCAGGAGTGTTGTCTGGTGATGTGAGCGACATTGTTCTTCTTGATGTAACACCACTTTCTCTGGGTTTGGAGACACTGGGTGGTGTGATGACCAAGATTATCCCAAGGAACACAACTTTGCCCACCTCCAAGTCAGAGGTCTTCTCAACCGCTGCTGATGGCCAGACTAGTGTGGAGATCAATGTCCTCCAAGGAGAGAGAGAGTTTGTCAGGGACAACAAATCTCTTGGTAGCTTTCGGCTTGATGGAATTCCTCCTGCCCCACGGGGTGTTCCACAAATCGAAGTTAAGTTTGACATCGATGCCAATGGCATCCTTTCTGTCAGCGCCGTAGACAAGGGTACTGGAAAGAAGCAGGACATTACGATAACTGGTGCCAGC-ACATTGCCGAAGGATGAGGTGGAGAAGATGGTTGAAGAAGCAGAGAAGTTTGCCAAGGAGGACAAAGAGAA-GAGGGACGCAATCGACACCAAGAACCAGGCAGAGTCTGTCATCTACCAGACTGAG-AAACAATTGAAGGAGCTCGGTGACAAGGTCCCAGGCGATGTGAAGGGTAAGGTTGAGGCGAAGCTGACGGAGCTCAAGGACGCTGTTGCAGGTGGCTCGACACAGACGATGAAGGATGCTCTCGCTGCTCTGAACCAGGAAGTGATGCAGCTGGGGCAGGCCCTCTACAGCCAGCAGGGTGCCCCAGGAGCAGGACCTACCCCAGGAGCTGAT-G--CTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCCAAATAGATGATGCTTTCGTTGCTCATACATACATATTCTTATGCCCTGTAGATTCGAGTTGGCAACTGCATGGTTCTCAAAAA]
[+] EMBL AK060410 [CTGGTGACACTCACCTTGGTGGTGATGACTTTGACAAGAGGGTTGTTGATTGGCTGGCGGGGAACTTCAAGAATGATGAAGGTATTGACCTACTAAAAGACAAGCAGGCCTTGCAACGTCTTACAGAAGCAGCTGAGAAGGCAAAGATGGAGCTATCATCCTTGACCCAAACAAATATCAGTTTACCCTTCATTACAGCTACTGCTGATGGGCCCAAGCATATCGAGACAACTCTTACCAGGGCTAAATTTGAGGAGCTATGTTCAGATCTTCTTGACAGGTTGAGGACCCCTGTGGACAATGCCCTCAGAGATGCAAAGTTGTCATTTAAAGACATAGATGAGGTGATCCTTGTCGGTGGCTCCACCAGAATTCCAGCTGTGCAGGATCTTGTGAAGAAAATGACTGGAAAGGACCCCAATGTGACTGTCAACCCTGATGAGGTTGTTGCACTTGGAGCAGCTGTTCAGGCAGGAGTGTTGTCTGGTGATGTGAGCGACATTGTTCTTCTTGATGTAACACCACTTTCTCTGGGTTTGGAGACACTGGGTGGTGTGATGACCAAGATTATCCCAAGGAACACAACTTTGCCCACCTCCAAGTCAGAGGTCTTCTCAACCGCTGCTGATGGCCAGACTAGTGTGGAGATCAATGTCCTCCAAGGAGAGAGAGAGTTTGTCAGGGACAACAAATCTCTTGGTAGCTTTCGGCTTGATGGAATTCCTCCTGCCCCACGGGGTGTTCCACAAATCGAAGTTAAGTTTGACATCGATGCCAATGGCATCCTTTCTGTCAGCGCCGTAGACAAGGGTACTGGAAAGAAGCAGGACATTACGATAACTGGTGCCAGC ACATTGCCGAAGGATGAGGTGGAGAAGATGGTTGAAGAAGCAGAGAAGTTTGCCAAGGAGGACAAAGAGAA GAGGGACGCAATCGACACCAAGAACCAGGCAGAGTCTGTCATCTACCAGACTGAG AAACAATTGAAGGAGCTCGGTGACAAGGTCCCAGGCGATGTGAAGGGTAAGGTTGAGGCGAAGCTGACGGAGCTCAAGGACGCTGTTGCAGGTGGCTCGACACAGACGATGAAGGATGCTCTCGCTGCTCCGAACCAGGAAGTGATGCAGCTGGGGCAGGCCCTCTACAGCCAGCAGGGTGCCCCAGGAGCAGGACCTACCCCAGGAGCTGAT G CTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCCAAATAGATGATGCTTTCG ]
[+] EMBL CB626782 [CTGGTGACACTCACCTTGGTGGTGATGACTTTGACAAGAGGGTTGTTGATTGGCTGGCGGGGAACTTCAAGAATGATGAAGGTATTGACCTACTAAAAGACAAGCAGGCCTTGCAACGTCTTACAGAAGCAGCTGAGAAGGCAAAGATGGAGCTATCATCCTTGACCCAAACAAATATCAGTTTACCCTTCATTACAGCTACTGCTGATGGGCCCAAGCATATCGAGACAACTCTTACCAGGGCTAAATTTGAGGAGCTATGTTCAGATCTTCTTGACAGGTTGAGGACCCCTGTGGACAATGCCCTCAGAGATGCAAAGTTGTCATTTAAAGACATAGATGAGGTGATCCTTGTCGGTGGCTCCACCAGAATTCCAGCTGTGCAGGATCTTGTGAAGAAAATG ]
[+] EMBL BQ172788 [ cGTGGAGATCAATGTCCTCCAAGGAGAGATAGAGTTTGTCAGGGACAACAAATCTCTTGGTAGCTTTCGGCTTGATGGAATTCCTCCTGCCCCACGGGGTGTTCCACAAATCGAAGTTAAGTTTGACATCGATGCCAATGGCATCCTTTCTGTCAGCGCCGTAGACAAGGGTACTGGAAAGAAGCAGGACATTACGATAACTGGTGCCAGCGTCATTGCCGAAGGATGAGGTGGAGAAGATGGTTGAAGAAGCAGAGAAGTTTGCCAAGGAGGACAAAGAGAATTAGGGACGCAATCGACACCAAGAACCAGGCAGAGTCTGTCATCTACCAGACTGAGNAAACAATCGAAGGAGCTCGGTGACAANGTCCCAGGCGATGTGAAGGGTAAGGTTGAGGCCAACCTGACGGAGCTCAAGGACNCTGTTGCAGGTGGCTCGACACAAACGATGAA GATGCTCTC CTGCTCTGAACCA CAA TGAT CA C GGNGCA GCCC CTACA CCA CA GGTG CCCA GA CANGACC A CCCA GATC GATCGCCCGGCCGCnccca ]
[-] EMBL CB966604 [ ATCTACCAGACTGAG AAACAATTGAAGGAGCTCGGTGACCAGGTCCCCGNCGATGTGAAGGGTAAGGTTTAGGCGAATCTTGCGGAGCTCAAGGACGCTGTTGCAGGTGGCTCGACACAGACGATGAAGGATGCTCTCGCTGCTCTGAACCAGGAAGTGATGCAGCTGGGGCAGGCCCTCTACAGCCAGCAGGGTGCCCCCGGAGCAGGACCTACCCCCGGAGCTGAT G CTGCCGCTGGCTCTGCTGGCCCCTCCGAGAAGCCCGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCCATGAGCCGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCCCCAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCCCAATAGATGATGCTTTCGTTGCTCATACATACATATTCTTATGCCCCGTAGATTCGAGTTGGCAACTGCA ]
[-] EMBL CB967368 [ CCAGACTGAG AAACCATTGAAGGAGCTCGGTGACAAGGTCCCAGGCGATGTGAAGGGTAAGGTTGAGGCGAAGCTGACGGAGCTCAAGGACGCTGTTGCAGGTGGCTCGACACAGACGATGAAGGATGCTCTCGCTGCTCTGAACCAGGAAGTGATGCAGCTGGGGCAGGCCCTCTACAGCCAGCAGGGTGCCCCAGGAGCAGGACCTACCCCAGGAGCTGAT G CTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTT GGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCCANATAGATGATGCTT ]
[+] EMBL BI794884 [ aGTTGAGGCGAAGCTGACGGAGCTCAAGGACGCTGTTGCAGGTGGCTCGACACAGACGATGAAGGATGCTCTCGCTGCTCTGAACCAGGAAGTGATGCAGCTGGGGCAGGCCCTCTACAGCCAGCAGGGTGCCCCAGGAGCAGGACCTACCCCAGGAGCTGAT G CTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCC ATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCC AATAGATGATGCTTTCGTTGCTCATACATACcaaaa ]
[+] EMBL CF197325 [ TCTACAGCCAGCAGGGTGCCCCAGGAGCAGGACCTACCCCAGGAGCTGAT G CTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCCAAATAGATGATGC ]
[+] EMBL BI795196 [ CAGGAGCTGAT G CTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCC AATAGATGATGCTTTCGTTGCTCATACATACATATTCTTATGCCCTGTAGATTCGAGTTGGCAACTGCATGGTTCTCAAAAA]
[+] EMBL AU086010 [ TGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCCAAATAGATGATGCTTTCGTTGCTCATACATACATATTCTTATGCCCTGTAGATTCGAGTTGGCAACTGCATGGTTCTCAAAAA]
consensusID : consensus_12077#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence
[CCAGGGAAAANGGAGGGGAGCATTAANCCNAGANAGCAGATTTTTATTCACCAGATGAGAAACAATTGAGGAGTTGGTANAAGTCCCAGNGATTGAAGGTAAAGGTTGAGGGGAAGCTGACGGAGTCAAGGACGCTGTTGCAGGTGGTTNGACACAGACGATGAAGGATGNTTTCGNTGTTNTGAACCAGGAAGTGATGCAGCTGGGGCAGGCCTTNTACAGCCAGCAGGGNGCCCCAGGAGCAGGACTTACCCCAGGAGATGATGCTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTNTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCCAAATAGATGATGCTTTCGTTGCTCATACAAAAAAAAAAAA]
[-] EMBL AA752195 [CCAGGGAAAANGGAGGGGAGCATTAANCCNAGANAGCAGATTTTTATTCACCAGATGAGAAACAATTGAGGAGTTGGTANAAGTCCCAGNGATTGAAGGTAAAGGTTGAGGGGAAGCTGACGGAGTCAAGGACGCTGTTGCAGGTGGTTNGACACAGACGATGAAGGATGNTTTCGNTGTTNTGAACCAGGAAGTGATGCAGCTGGGGCAGGCCTTNTACAGCCAGCAGGGNGCCCCAGGAGCAGGACTTACCCCAGGAGATGATGCTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTNTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCCAAATAGATGATGCTTTCGTTGCTCATACAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12077#0 CTGGTGACACTCACCTTGGTGGTGATGACTTTGACAAGAGGGTTGTTGATTGGCTGGCGG 60
consensus_12077#1 ------------------------------------------------------------
consensus_12077#0 GGAACTTCAAGAATGATGAAGGTATTGACCTACTAAAAGACAAGCAGGCCTTGCAACGTC 120
consensus_12077#1 ------------------------------------------------------------
consensus_12077#0 TTACAGAAGCAGCTGAGAAGGCAAAGATGGAGCTATCATCCTTGACCCAAACAAATATCA 180
consensus_12077#1 ------------------------------------------------------------
consensus_12077#0 GTTTACCCTTCATTACAGCTACTGCTGATGGGCCCAAGCATATCGAGACAACTCTTACCA 240
consensus_12077#1 ------------------------------------------------------------
consensus_12077#0 GGGCTAAATTTGAGGAGCTATGTTCAGATCTTCTTGACAGGTTGAGGACCCCTGTGGACA 300
consensus_12077#1 ------------------------------------------------------------
consensus_12077#0 ATGCCCTCAGAGATGCAAAGTTGTCATTTAAAGACATAGATGAGGTGATCCTTGTCGGTG 360
consensus_12077#1 ------------------------------------------------------------
consensus_12077#0 GCTCCACCAGAATTCCAGCTGTGCAGGATCTTGTGAAGAAAATGACTGGAAAGGACCCCA 420
consensus_12077#1 ------------------------------------------------------------
consensus_12077#0 ATGTGACTGTCAACCCTGATGAGGTTGTTGCACTTGGAGCAGCTGTTCAGGCAGGAGTGT 480
consensus_12077#1 ------------------------------------------------------------
consensus_12077#0 TGTCTGGTGATGTGAGCGACATTGTTCTTCTTGATGTAACACCACTTTCTCTGGGTTTGG 540
consensus_12077#1 ------------------------------------------------------------
consensus_12077#0 AGACACTGGGTGGTGTGATGACCAAGATTATCCCAAGGAACACAACTTTGCCCACCTCCA 600
consensus_12077#1 ------------------------------------------------------------
consensus_12077#0 AGTCAGAGGTCTTCTCAACCGCTGCTGATGGCCAGACTAGTGTGGAGATCAATGTCCTCC 660
consensus_12077#1 ------------------------------------------------------------
consensus_12077#0 AAGGAGAGAGAGAGTTTGTCAGGGACAACAAATCTCTTGGTAGCTTTCGGCTTGATGGAA 720
consensus_12077#1 ------------------------------------------------------------
consensus_12077#0 TTCCTCCTGCCCCACGGGGTGTTCCACAAATCGAAGTTAAGTTTGACATCGATGCCAATG 780
consensus_12077#1 ------------------------------------------------------------
consensus_12077#0 GCATCCTTTCTGTCAGCGCCGTAGACAAGGGTACTGGAAAGAAGCAGGACATTACGATAA 840
consensus_12077#1 ------------------------------------------------------------
consensus_12077#0 CTGGTGCCAGCACATTGCCGAAGGATGAGGTGGAGAAGATGGTTGAAGAAGCAGAGAAGT 900
consensus_12077#1 ------------------------------------------------------------
consensus_12077#0 TTGCCAAGGAGGACAAAGAGAAGAGGGACGCAATCGACACCAAGAACCAGGCAGAGTCTG 960
consensus_12077#1 ------------CCAGGGAAAANGGAGGGGAGCATTAANCCNAGAN---AGCAGATTTT- 44
** ** ** * * * * ** *** ***** * *
consensus_12077#0 TCATCTACCAGACTGAGAAACAATTGAAGGAGCTCGGTGACAAGGTCCCAGGCGATGTGA 1020
consensus_12077#1 -TATTCACCAGA-TGAGAAACAATTGAGGAG--TTGGTA--NAAGTCCCAGN-GAT-TGA 96
** ****** ************** * * *** * ******* *** ***
consensus_12077#0 AGGGTAAGGTTGAGGCGAAGCTGACGGAGCTCAAGGACGCTGTTGCAGGTGGCTCGACAC 1080
consensus_12077#1 AGGTAAAGGTTGAGGGGAAGCTGACGGAG-TCAAGGACGCTGTTGCAGGTGGTTNGACAC 155
*** ********** ************* ********************** * *****
consensus_12077#0 AGACGATGAAGGATGCTCTCGCTGCTCTGAACCAGGAAGTGATGCAGCTGGGGCAGGCCC 1140
consensus_12077#1 AGACGATGAAGGATGNTTTCGNTGTTNTGAACCAGGAAGTGATGCAGCTGGGGCAGGCCT 215
*************** * *** ** * ********************************
consensus_12077#0 TCTACAGCCAGCAGGGTGCCCCAGGAGCAGGACCTACCCCAGGAGCTGATGCTGCCGCTG 1200
consensus_12077#1 TNTACAGCCAGCAGGGNGCCCCAGGAGCAGGACTTACCCCAGGAGATGATGCTGCCGCTG 275
* ************** **************** *********** **************
consensus_12077#0 GCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATT 1260
consensus_12077#1 GCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATT 335
************************************************************
consensus_12077#0 TTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCG 1320
consensus_12077#1 TTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCG 395
************************************************************
consensus_12077#0 ACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATG 1380
consensus_12077#1 ACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATG 455
************************************************************
consensus_12077#0 GGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTGAGTTCTGGGAATT 1440
consensus_12077#1 GGCACCTTTGCTTCCTATTTGTGGAGTTNTGGGCGGCGGAGTTTTTGAGTTCTGGGAATT 515
**************************** *******************************
consensus_12077#0 TCACTTCCAAATAGATGATGCTTTCGTTGCTCATACATACATATTCTTATGCCCTGTAGA 1500
consensus_12077#1 TCACTTCCAAATAGATGATGCTTTCGTTGCTCATACAAAAAAAAAAAA------------ 563
************************************* * * *
consensus_12077#0 TTCGAGTTGGCAACTGCATGGTTCTCAAAAA 1531
consensus_12077#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||