These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [GAGAAAATAATCCACCTGAAAGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCACGATAATTATTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTATCAAATTCCCATGGCGAAATTTATGGGATTCAGCAATACCGAGATAGGTTTAATAATGAGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGTATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTG] [+] EMBL CB640199 [GAGAAAATAATCCACCTGAAAGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCACGATAATTATTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTATCAAATTCCCATGGCGAAATTTATGGGATTCAGCAATACCGAGATAGGTTTAATAATGAGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGTATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTG] consensusID : consensus_1208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [CCCCATGTAGCTCGTTGCCACCAGCGACATGCCATACATTCCGGTCAGATAGTTGGTGGAGTAACTCAGAATGGCGTAGATGGTGAAGACGCCAAAAATCACCATGCTGCAATACCAGGTGGTGCTGATACGCAAAACGGCCAGGATGTCGCTAAGCTGGAATTTTTGTTTTTCTTCGNTATTGGCACTGCGCAGGTTGTTGTTATTCGCTACATAAAACCAGCACATAATCCCCAACAAGATGTAAACCACACTATAGATGATAATGACCGTTTTCAGGCTGGTGCTGTCATCCGGTGCAAAGCGAGAAAAGACCCACATGGTAAACACCGCCAGCGACATTACACCGACGCCGCGCAGCCCTTCCATCCAGCCCATAATTTTCCCTTGCTCGCTATGATCGCCAAGCAACGATGCAGCTTTAATCGACACCGACCACAGCATT] [+] EMBL CF306163 [CCCCATGTAGCTCGTTGCCACCAGCGACATGCCATACATTCCGGTCAGATAGTTGGTGGAGTAACTCAGAATGGCGTAGATGGTGAAGACGCCAAAAATCACCATGCTGCAATACCAGGTGGTGCTGATACGCAAAACGGCCAGGATGTCGCTAAGCTGGAATTTTTGTTTTTCTTCGNTATTGGCACTGCGCAGGTTGTTGTTATTCGCTACATAAAACCAGCACATAATCCCCAACAAGATGTAAACCACACTATAGATGATAATGACCGTTTTCAGGCTGGTGCTGTCATCCGGTGCAAAGCGAGAAAAGACCCACATGGTAAACACCGCCAGCGACATTACACCGACGCCGCGCAGCCCTTCCATCCAGCCCATAATTTTCCCTTGCTCGCTATGATCGCCAAGCAACGATGCAGCTTTAATCGACACCGACCACAGCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1208#0 ----GAGAAAATAAT--CCACCTGAAAGGCGGCTTACTTTTCTCTT------TTTTTTGT 48 consensus_1208#1 CCCCATGTAGCTCGTTGCCACCAGCGACATGCCATACATTCCGGTCAGATAGTTGGTGGA 60 * * * * ***** * * * * *** ** * * ** * * consensus_1208#0 CTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAAC-CCTCA 107 consensus_1208#1 GTAACTCAGAATGGCGTA-GATGGTGAAGACGCCAAAAATCACCATGCTGCAATACCAGG 119 ** ** * ** ** *** ** ** * * *** ** * ** ** consensus_1208#0 CGATAATTATTTTTAG--CGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTA 165 consensus_1208#1 TGGTGCTGATACGCAAAACGGCCAGGATGTCGCTAAGCTGGAATTTTTGTTTT---TCTT 176 * * * ** * **** * * * **** * *** ** * * consensus_1208#0 TCAAATTCCCATGGCGAAATTTATGGGATTCAGCAATACCGAGATAG-GTTTAATAATGA 224 consensus_1208#1 CGNTATTGGCACTGCGCAGGTTGTTGTTATTCGCTACATAAAACCAGCACATAATCCCCA 236 *** ** *** * ** * * * ** * * * ** **** * consensus_1208#0 GTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAAT 284 consensus_1208#1 ACAAGATGTAAACCACA-CTATAGATGATAATGACCGTTTTCAGGCTGGTGCTG-TCATC 294 * * * * * ** * * *** ** * * *** * * * consensus_1208#0 TTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGG-ATTACTGGGTCTGTTA 343 consensus_1208#1 CGGTGCAAAGCGAGA-AAAGACCCACATGGTAAACACCGCCAGCGACATTACACCGACGC 353 ** ** * * * ** * * * * ** ** * * * * consensus_1208#0 ATGGCAACGTATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACG 403 consensus_1208#1 CGCGCAGCCCTTCCATC-CAGCCCATAATTTTCCCT-TGCTCGCTATGATCGCCA-AGCA 410 *** * **** * * * **** ** * * * * ** * * * consensus_1208#0 ACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTG 448 consensus_1208#1 ACGATGC---AGCTTTAATCGACACCGACCACAGCATT------- 445 ***** *** * *** *** * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||