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Oryza sativa
cluster # 12102 cluster # 12102       Sequences # 10       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12102#0 length = 2191 sequences # 8  
 consensus_12102#1 length = 420 sequences # 1  
consensus_12102#2 length = 283 sequences # 1  
consensusID : consensus_12102#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2191
fasta sequence 
                              [CCGCATCCGCATCGTCGTCGGCAAGAGCAAACCTGTCGCGTCCCCATTCCAAGCCCGCCACTTTGTCCTCCTCCTCTGGCGCTCGGCTCGCCGGGAAGCAGAGCAGCAGCAGCGAACCCCTCTCTCGCCGCAGATCCCAACGCCGCACACACACGCACACGCACCCGCACGCGCACGCATTTCCAGCTCGCGACGACGCCCATCTCGACGCGACGCGATCCCCGCCAAGTCAAACCCCACCCGTTATACTCTCCACTGCGATCTCAGAGGCAGAGGCAGAGCCCACGCCGCGCAGATCCACCTCTCTCCGCCCTGGATTCCGCGGAGCAGGAGGCGGTCAAGCCGTCGCCGCCGCCGCCGGGCCGCATCCGCTACCGCACGCCCTCCTCCCCGGACCTCCTCCTCGCCCCGCCCTCCGACGCCGACGCCAAGAACATGCGCCGCTACTCCGCGCTGCCCGGCGGCGGCGCCCGCCCCGACACGCTCGCCGACCGCCTCCACCGCTACCGCGGCGTCCTCCTCGTCATACTCGCCCCGCTCGCCCTCGTCTCCCTCGTCCTCCTCCTCATGCCGCGCTCCCCCGCCTCCTCCTCCGCCGCCGCCGGCAGGAGGTGGGGCCCCCTCGACGCCAACAAGTACGCCGTCATTTTCGACGCCGGGAGCTCCGGAAGCCGCGTCCACGTCTTCCGCTTCGACGCCAACCTCGATCTGCTCCACATTGGCGACCAGATCGAGCTCTTCGTCCAGAAAAAGCC-GGGGCTTAGCGCGTACGCCAAGAACCCGCAGGAGGCTGCCAAATCGCTCGTCTCTCTCCTTGAGGATGCCAAACGAGTGGTTCCCGCGGGATTGCGCGGCCAGACTCCTGTTAGAGTTGGGGCCACCGCCGGGCTAAGAGCGTTGGGAGCAGAAAAATCAGAGGAGATTTTGCAAGCGGTCAGGGATCTTCTTCGCGAAAAGAGTTCGTTCAAGACCCAACCGGATTGGGTTACAGTTCTTGATGGACCTCAGGAAGGCGCATATGAATGGGTTACCATCAATTATCTGCTGGGGAAATTGGGAAAGACTTACGCAGACACAGTTGGAGTGGTTGATCTTGGAGGTGGATCTGTGCAGATGGCATATGCAATTGCAGAGAAGGATGCAGTGAAGGCTCCTAAACCATCAGAGGGTGAAGATTCATATGTGAAGAAACTGTTTCTTAAAGGAACAACATATTATCTTTATGTTCACAGCTATTTGCATTATGGGTTGCTGGCTGCTAGAGCAGAGATCTTAAAAGCCGGCAATGGCAAAGGTTACAGCTACTGTACATTGGAGGGGCATCAAGGGCAATACAAATATGGCAATGGCAAATTTGAAGCGTCGGCTTCACCATCTGGTGCTAGTTATTCAAAATGCAGGGATGATGTAGTGAAAGCTCTTAAAGTTGACCAAGCATGCACTCACATGAAATGTTCTTTTGGTGGCATTTGGAATGGTGGTGGTGGCGCTGGACAGAAGAATTTGTTTGTGGCATCATTTTTCTTCGACAGGGCAGCTG-----AGGCTGGATTTGTGAATCCCAAGGCACCTGTGGCTAAGGTTAAACCTTCAGATTTTGAAAAGGCTGCCAAGCGTGCATGTAAGTTAAACTTGAAGGACGCCGAAGCTGCCTACCCTGGTGTCCAAAAGGATAACATTCCATATATCTGCATGGATCTCGTTTACCAGTACACCTTACTTGTGGATGGATTTGGTGTTGGTTCTCACCAAGAGATGACCTTGGTAAAGAAAGTCCCTTACAGCAACGCG-TTTGTGGAAGCAGCATGGCCACTGGGAAGTGCCATTGAGGTTGCATCTTGATAGACAGACAGCAGAAAGTTCAGCAAGGGAGCTACGATCAGAGGGCGTCATCGCCGTAAAGTTTTGGATCTGGAGGGTGTTCGCTTGCTCGGCGCTGCGCACGCCCCAAGTGACCATTTTGTTACTGAAATCGATTGATTTAACCTGCTTCTATACAGTAGCCTGATAATGAGTGATACACAAGGACCCGCCAGCTTGCATAGTTGCATACTTGCATGCAAGGGGTATATACA-TTATTTTTTGTACCATTGAAAGTAAGACGAGCCTGTCATTCTTTTCTTGATCTATACTACTCCAGTTCTGTACCTCTGTTAGGGGCAGTACAGTAGAGAAGAAAAAAAAAAAAAAAAGA]

[+] EMBL CB631156             [CCGCATCCGCATCGTCGTCGGCAAGAGCAAACCTGTCGCGTCCCCATTCCAAGCCCGCCACTTTGTCCTCCTCCTCTGGCGCTCGGCTCGCCGGGAAGCAGAGCAGCAGCAGCGAACCCCTCTCTCGCCGCAGATCCCAACGCCGCACACACACGCACACGCACCCGCACGCGCACGCATTTCCAGCTCGCGACGACGCCCATCTCGACGCGACGCGATCCCCGCCAAGTCAAACCCCACCCGTTATACTCTCCACTGCGATCTCAGAGGCAGAGGCAGAGCCCACGCCGCGCAGATCCACCTCTCTCCGCCCTGGATTCCGCGGAGCAGGAGGCGGTCAAGCCGTCGCCGCCGCCGCCGGGCCGCATCCGCTACCGCACGCCCTCCTCCCCGGACCTCCTCCTCGCCCCGCCCTCCGACGCCGACGCCAAGAACATGCGCCGCTACTCCGCGCTGCCCGGCGGCGGCGCCCGCCCCGACACGCTCGCCGACCGCCTCCACCGCTACCGCGGCGTCCTCCTCGTCATACTCGCCCCGCTCGCCCTCGTCTCCCTCGTCCTCCTCCTCATGCCGCGCTCCCCCGCCTCCTCCTCCGCCGCCGCCGGCAGGAGGTGGGGCCCCCTCGACGCCAACAAGTACGCCGTCATTTTCGACGCCGGGAGCTCCGGAAGCCGCGTCCACGTCTTCCGCTTCGACGCCAACCTCGATCTGCTCCACATTGGCGACCAGATCGAGCTCTTCGTCCAGAAAAAGCCGGGGGCTTAGCGCGTACGCCAAGAACCCGCAGGAGGCTGCCAAATCGCTCGTCTCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB618311             [                                                                                                      GCAGCAGCAGCGAACCCCTCTCTCGCCGCAGATCCCAACGCCGCACACACACGCACACGCACCCGCACGCGCACGCATTTCCAGCTCGCGACGACGCCCATCTCGACGCGACGCGATCCCCGCCAAGTCAAACCCCACCCGTTATACTCTCCACTGCGATCTCAGAGGCAGAGGCAGAGCCCACGCCGCGCAGATCCACCTCTCTCCGCCCTGGATTCCGCGGAGCAGGAGGCGGTCAAGCCGTCGCCGCCGCCGCCGGGCCGCATCCGCTACCGCACGCCCTCCTCCCCGGACCTCCTCCTCGCCCCGCCCTCCGACGCCGACGCCAAGAACATGCGCCGCTACTCCGCGCTGCCCGGCGGCGGCGCCCGCCCCGACACGCTCGCCGACCGCCTCCACCGCTACCGCGGCGTCCTCCTCGTCATACTCGCCCCGCTCGCCCTCGTCTCCCTCGTCCTCCTCCTCATGCCGCGCTCCCCCGCCTCCTCCTCCGCCGCCGCCGGCAGGAGGTGGGGCCCCCTCGACGCCAACAAGTACGCCGTCATTTTCGACGCCGGGAGCTCCGGAAGCCGCGTCCACGTCTTCCGCTTCGACGCCAACCTCGATCTGCTCCACATTGGCGACCAGATCGAGCTCTTCGTCCAGAAAAAGCC GGGGCTTAGCGCGTACGCCAAGAACCCGCAGGAGGCTGCCAAATCGCTCGTCTCTCTCCTTGAGGATGCCAAACGAGTGGTTCCCGCGGGATTGCGCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK066262             [                                                                                                                   ACCCCTCTCTCGCCGCAGATCCCAACGCCGCACACACACGCACACGCACCCGCACGCGCACGCATTTCCAGCTCGCGACGACGCCCATCTCGACGCGACGCGATCCCCGCCAAGTCAAACCCCACCCGTTATACTCTCCACTGCGATCTCAGAGGCAGAGGCAGAGCCCACGCCGCGCAGATCCACCTCTCTCCGCCCTGGATTCCGCGGAGCAGGAGGCGGTCAAGCCGTCGCCGCCGCCGCCGGGCCGCATCCGCTACCGCACGCCCTCCTCCCCGGACCTCCTCCTCGCCCCGCCCTCCGACGCCGACGCCAAGAACATGCGCCGCTACTCCGCGCTGCCCGGCGGCGGCGCCCGCCCCGACACGCTCGCCGACCGCCTCCACCGCTACCGCGGCGTCCTCCTCGTCATCCTCGCCCCGCTCGCCCTCGTCTCCCTCGTCCTCCTCCTCATGCCGCGCTCCCCCGCCTCCTCCTCCGCCGCCGCCGGCAGGAGGTGGGGCCCCCTCGACGCCAACAAGTACGCCGTCATTTTCGACGCCGGGAGCTCCGGGAGCCGCGTCCACGTCTTCCGCTTCGACGCCAACCTCGATCTGCTCCACATTGGCGACCAGATCGAGCTCTTCGTCCAGAAAAAGCC GGGGCTTAGCGAGTACGCCAATAACCCGCAGGAGGCTGCCAAATCGCTCGTCTCTCTCCTTGAGGATGCCAAACGAGTGGTTCCCGTGGAATTGCGCGGCCAGACTCCTGTTAGAGTTGGGGCCACCGCCGGGCTAAGAGCGTTGGGAGCAGAAAAATCAGAGGAGATTTTGCAAGCGGTCAGGGATCTTCTTCGCGAAAAGAGTTCGTTCAAGACCCAACCGGATTGGGTTACAGTTCTTGATGGACCTCAGGAAGGCGCATATGAATGGGTTACCATCAATTATCTGCTGGGGAAATTGGGAAAGACTTACGCAGACACAGTTGGAGTGGTTGATCTTGGAGGTGGATCTGTGCAGATGGCATATGCAATTGCAGAGAAGGATGCAGTGAAGGCTCCTAAACCATCAGAGGGTGAAGATTCATATGTGAAGAAACTGTTTCTTAAAGGAACAACATATTATCTTTATGTTCACAGCTATTTGCATTATGGGTTGCTGGCTGCTAGAGCAGAGATCTTAAAAGCCGGCAATGGCAAAGGTTACAGCTACTGTACATTGGAGGGGCATCAAGGGCAATACAAATATGGCAATGGCAAATTTGAAGCGTCGGCTTCACCATCTGGTGCTAGTTATTCAAAATGCAGGGATGATGTAGTGAAAGCTCTTAAAGTTGACCAAGCATGCACTCACATGAAATGTTCTTTTGGTGGCATTTGGAATGGTGGTGGTGGCGCTGGACAGAAGAATTTGTTTGTGGCATCATTTTTCTTCGACAGGGCAGCTG     AGGCTGGATTTGTGAATCCCAAGGCACCTGTGGCTAAGGTTAAACCTTCAGATTTTGAAAAGGCTGCCAAGCGTGCATGTAAGTTAAACTTGAAGGACGCCGAAGCTGCCTACCCTGGTGTCCAAAAGGATAACATTCCATATATCTGCATGGATCTCGTTTACCAGTACACCTTACTTGTGGATGGATTTGGTGTTGGTTCTCACCAAGAGATGACCTTGGTAAAGAAAGTCCCTTACAGCAACGCG TTTGTGGAAGCAGCATGGCCACTGGGAAGTGCCATTTAGGTTGCATCTTGATAGACAGACAGCAGAAAGTTCAGCAAGGGAGCTACGATCAGAGGGCGTCATCGCCGTAAAGTTTTGGATCTGGAGGGTGTTCGCTTGCTCGGCGCTGCGCACGCCCCAAGTGACCATTTTGTTACTGAAATCGATTGATTTAACCTGCTTCTATACAGTAGCCTGATAATGAGTGATACACAAGGACCCGCCAGCTTGCATAGTTGCATACTTGCATGCAAGGGGTATATACATTTTTTTTTTGTACCATTGAAAGTAAGACGAGCCTGTCATTCTTTTCTTGATCTATACTACT                                                          ]
[+] EMBL AU225212             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           gccGCT CTAAACCATCAGAGGGTGAANATTCATATGTGAAGAAACTGTTTCTTAAAGGAACAACATATTATCTTTATGTTCACAGCTATTTGCATTATGGGTTGCTGGCTGCTATATCATAGATCTTAAAAGCCGGCAATGGCAAAGGTTACAGCTACTGTACATTGGAGGGGCATCAAGGGCAATACAAATATGGCAATGGCAAATTTGAAGCGTCGGCTTCACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB631157             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGGTTACAGCTACTGTACATTGGAGGGGCATCAAGGGCAATACAAATATGGCAATGGCAAA TTGAAGCGTCGGCTTCACCATCTGGTGCTAGTTATTCAAAATGCAGGGATGATGTAGTGAAAGCTCTTAAAGTTGACCAAGCATGCACTCACATGAAATGTTCTTTTGGTGGCATTTGGAATGGTGGTGGTGGCGCTGGACAGAAGAATTTGTTTGTGGCATCATTTTTCTTCGACAGGGCAGCTGAGGTAAGGCTGGATTTGTGAATCCCAAGGCACCTGTGGCTAAGGTTAAACCTTCAGATTTTGAAAAGGCTGCCAAGCGTGCATGTAAGTTAAACTTGAAGGACGCCGAAGCTGCCTACCCTGGTGTCCAAAAGGATAACATTCCATATATCTGCATGGATCTCGTTTACCAGTACACCTTACTTGTGGATGGATTTGGTGTTGGTTCTCACCAAGAGATGACCTTGGTAAAGAAAGTCCCTTACAGCAACGCG TTTGTGGAAGCAGCATGGCCACTGGGAAGTGCCATTGAGGTTGCATCTTGATAGACAGACAGCAGAAAGTTCAGCAAGGGAGCTACGATCAGAGGGCGTCATCGCCGTAAAGTTTTGGATCTGGAGGGTGTTCGCTTGCTCGGCGCTGCGCACGCCCCAAGTGACCATTTTGTTACTGAAATCGATTGATTTAACCTGCTTCTATACAGTAGCCTGATAATGAGTGATACACAAGGACCCGCCAGCTTGCATAGTTGCATACTTGCATGCAAGGGGTATATACA TTATTTTTTGTACCATTGAAAGTAAGACGAGCCTGTCATTCTTTTCTTGAT                                                                    ]
[-] EMBL CB618312             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGATGATGTAGTGAAAGCTCTTAAAGTTGACCAAGCATGCACTCACATGAAATGTTCTTTTGGTGGCATTTGGAATGGTGGTGGTGGCGCTGGACAGAAGAATTTGTTTGTGGCATCATTTTTCTTCGACAGGGCAGCTG     AGGCTGGATTTGTGAATCCCAAGGCACCTGTGGCTAAGGTTAAACCTTCAGATTTTGAAAAGGCTGCCAAGCGTGCATGTAAGTTAAACTTGAAGGACGCCGAAGCTGCCTACCCTGGTGTCCAAAAGGATAACATTCCATATATCTGCATGGATCTCGTTTACCAGTACACCTTACTTGTGGATGGATTTGGTGTTGGTTCTCACCAAGAGATGACCTTGGTAAAGAAAGTCCCTTACAGCAACGCG TTTGTGGAAGCAGCATGGCCACTGGGAAGTGCCATTGAGGTTGCATCTTGATAGACAGACAGCAGAAAGTTCAGCAAGGGAGCTACGATCAGAGGGCGTCATCGCCGTAAAGTTTTGGATCTGGAGGGTGTTCGCTTGCTCGGCGCTGCGCACGCCCCAAGTGACCATTTTGTTACTGAAATCGATTGATTTAACCTGCTTCTATACAGTAGCCTGATAATGAGTGATACACAAGGACCCGCCAGCTTGCATAGTTGCATACTTGCATGCAAGGGGTATATACA TTATTTTTTGTACCATTGAAAGTAAGACGAGCCTGTCATTCTTTTCTTGATCTATACTACTCCAGTTCTGTACCTCTGTTAGGGGCAGTACAGTAGAGAAGAAAAAAAAAAAAAAAAGA]
[+] EMBL AU096915             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCGACAGGGCAGCTG     AGGCTGGATTTGTGAATCCCAAGGCACCTGTGGCTAAGGTTAAACCTTCAGATTTTGAAAAGGCTGCCAAGCGTGCATGTAAGTTAAACTTGAAGGACGCCGAAGCTGCCTACCCTGGTGTCCAAAAGGATAACATTCCATATATCTGCATGGATCTCGTTTACCAGTACACCTTACTTGTGGATGGATTTGGTGTTGGTTCTCACCAAGAGATGACCTTGGTAAAGAAAGTCCCTTACAGCAACGCG TTTGTGGAAGCAGCATGGCCACTGGGAAGTGCCATTGAGGTTGCATCTTGATAGACAGACAGCAGAAAG TCAGCAAGGGAGCTACGATCAGAGGGCGTCATCGCCcgt                                                                                                                                                                                                                                                                                                       ]
[+] EMBL OSS16311A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCGACAGGGCAGCTG     AGGCTGGATTTGTGAATCCCAAGGCACCTGTGGCTAAGGTTAAACCTTCAGATTTTGAAAAGGCTGCCAAGCGTGCATGTAAGTTAAACTTGAAGGACGCCGAAGCTGCCTACCCTGGTGTCCAAAAGGATAACATTCCATATATCTGCATGGATCTCGTTTACCAGTACACCTTACTTGTGGATGGATTTGGTGTTGGTTCTCACCAAGAGATGACCTTGGTAAAGAAAGTCCCTTACAGCAACGCGTTTTGTGGAAGCAGCATGGCCACTGGGAAGTGCCATTGAGGTTGCATCTTGATAGACAGACAGCAGNAAGTTCAGCAA                                                                                                                                                                                                                                                                                                                                       ]




>consensus_12102#0
CCGCATCCGCATCGTCGTCGGCAAGAGCAAACCTGTCGCGTCCCCATTCCAAGCCCGCCA
CTTTGTCCTCCTCCTCTGGCGCTCGGCTCGCCGGGAAGCAGAGCAGCAGCAGCGAACCCC
TCTCTCGCCGCAGATCCCAACGCCGCACACACACGCACACGCACCCGCACGCGCACGCAT
TTCCAGCTCGCGACGACGCCCATCTCGACGCGACGCGATCCCCGCCAAGTCAAACCCCAC
CCGTTATACTCTCCACTGCGATCTCAGAGGCAGAGGCAGAGCCCACGCCGCGCAGATCCA
CCTCTCTCCGCCCTGGATTCCGCGGAGCAGGAGGCGGTCAAGCCGTCGCCGCCGCCGCCG
GGCCGCATCCGCTACCGCACGCCCTCCTCCCCGGACCTCCTCCTCGCCCCGCCCTCCGAC
GCCGACGCCAAGAACATGCGCCGCTACTCCGCGCTGCCCGGCGGCGGCGCCCGCCCCGAC
ACGCTCGCCGACCGCCTCCACCGCTACCGCGGCGTCCTCCTCGTCATACTCGCCCCGCTC
GCCCTCGTCTCCCTCGTCCTCCTCCTCATGCCGCGCTCCCCCGCCTCCTCCTCCGCCGCC
GCCGGCAGGAGGTGGGGCCCCCTCGACGCCAACAAGTACGCCGTCATTTTCGACGCCGGG
AGCTCCGGAAGCCGCGTCCACGTCTTCCGCTTCGACGCCAACCTCGATCTGCTCCACATT
GGCGACCAGATCGAGCTCTTCGTCCAGAAAAAGCCGGGGCTTAGCGCGTACGCCAAGAAC
CCGCAGGAGGCTGCCAAATCGCTCGTCTCTCTCCTTGAGGATGCCAAACGAGTGGTTCCC
GCGGGATTGCGCGGCCAGACTCCTGTTAGAGTTGGGGCCACCGCCGGGCTAAGAGCGTTG
GGAGCAGAAAAATCAGAGGAGATTTTGCAAGCGGTCAGGGATCTTCTTCGCGAAAAGAGT
TCGTTCAAGACCCAACCGGATTGGGTTACAGTTCTTGATGGACCTCAGGAAGGCGCATAT
GAATGGGTTACCATCAATTATCTGCTGGGGAAATTGGGAAAGACTTACGCAGACACAGTT
GGAGTGGTTGATCTTGGAGGTGGATCTGTGCAGATGGCATATGCAATTGCAGAGAAGGAT
GCAGTGAAGGCTCCTAAACCATCAGAGGGTGAAGATTCATATGTGAAGAAACTGTTTCTT
AAAGGAACAACATATTATCTTTATGTTCACAGCTATTTGCATTATGGGTTGCTGGCTGCT
AGAGCAGAGATCTTAAAAGCCGGCAATGGCAAAGGTTACAGCTACTGTACATTGGAGGGG
CATCAAGGGCAATACAAATATGGCAATGGCAAATTTGAAGCGTCGGCTTCACCATCTGGT
GCTAGTTATTCAAAATGCAGGGATGATGTAGTGAAAGCTCTTAAAGTTGACCAAGCATGC
ACTCACATGAAATGTTCTTTTGGTGGCATTTGGAATGGTGGTGGTGGCGCTGGACAGAAG
AATTTGTTTGTGGCATCATTTTTCTTCGACAGGGCAGCTGAGGCTGGATTTGTGAATCCC
AAGGCACCTGTGGCTAAGGTTAAACCTTCAGATTTTGAAAAGGCTGCCAAGCGTGCATGT
AAGTTAAACTTGAAGGACGCCGAAGCTGCCTACCCTGGTGTCCAAAAGGATAACATTCCA
TATATCTGCATGGATCTCGTTTACCAGTACACCTTACTTGTGGATGGATTTGGTGTTGGT
TCTCACCAAGAGATGACCTTGGTAAAGAAAGTCCCTTACAGCAACGCGTTTGTGGAAGCA
GCATGGCCACTGGGAAGTGCCATTGAGGTTGCATCTTGATAGACAGACAGCAGAAAGTTC
AGCAAGGGAGCTACGATCAGAGGGCGTCATCGCCGTAAAGTTTTGGATCTGGAGGGTGTT
CGCTTGCTCGGCGCTGCGCACGCCCCAAGTGACCATTTTGTTACTGAAATCGATTGATTT
AACCTGCTTCTATACAGTAGCCTGATAATGAGTGATACACAAGGACCCGCCAGCTTGCAT
AGTTGCATACTTGCATGCAAGGGGTATATACATTATTTTTTGTACCATTGAAAGTAAGAC
GAGCCTGTCATTCTTTTCTTGATCTATACTACTCCAGTTCTGTACCTCTGTTAGGGGCAG
TACAGTAGAGAAGAAAAAAAAAAAAAAAAGA

consensusID : consensus_12102#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence 
                              [CTNACTTGTGGATGGATTTGGTGTTGGTTCTCACCAAGAAGATGACCTTGGTAAAGAAAGTCCCTTACAGNAACGCGTTTGTGGAANCACATGGCCACTGGGAAGTGNCATTNAGGTTGCATCTTGATANACANACANCACACAGTNCAGCNAGGGAGCTACGATCANAGGGCGTCATCCCGTAAAGTTTTGGATCTGGANGGTGTTCGCTTGCTCGGCGCTGCGCACGCCCCAANTGACCATTTTGTGACTGAAATCGATTGATTTAACCTGCTTCTATACNNTACCTGATAATGAGTGATACACAAGGACCCGCCNACTTGCATANTTGCATACTTGCATGCNANGGGTATATACATTTNNTTTTTNTACCATTGAAAGTTAGACANCCCGTCNNCCTTTCTNGATCTAACTACTCCA]

[+] EMBL BE228538             [CTNACTTGTGGATGGATTTGGTGTTGGTTCTCACCAAGAAGATGACCTTGGTAAAGAAAGTCCCTTACAGNAACGCGTTTGTGGAANCACATGGCCACTGGGAAGTGNCATTNAGGTTGCATCTTGATANACANACANCACACAGTNCAGCNAGGGAGCTACGATCANAGGGCGTCATCCCGTAAAGTTTTGGATCTGGANGGTGTTCGCTTGCTCGGCGCTGCGCACGCCCCAANTGACCATTTTGTGACTGAAATCGATTGATTTAACCTGCTTCTATACNNTACCTGATAATGAGTGATACACAAGGACCCGCCNACTTGCATANTTGCATACTTGCATGCNANGGGTATATACATTTNNTTTTTNTACCATTGAAAGTTAGACANCCCGTCNNCCTTTCTNGATCTAACTACTCCA]




>consensus_12102#1
CTNACTTGTGGATGGATTTGGTGTTGGTTCTCACCAAGAAGATGACCTTGGTAAAGAAAG
TCCCTTACAGNAACGCGTTTGTGGAANCACATGGCCACTGGGAAGTGNCATTNAGGTTGC
ATCTTGATANACANACANCACACAGTNCAGCNAGGGAGCTACGATCANAGGGCGTCATCC
CGTAAAGTTTTGGATCTGGANGGTGTTCGCTTGCTCGGCGCTGCGCACGCCCCAANTGAC
CATTTTGTGACTGAAATCGATTGATTTAACCTGCTTCTATACNNTACCTGATAATGAGTG
ATACACAAGGACCCGCCNACTTGCATANTTGCATACTTGCATGCNANGGGTATATACATT
TNNTTTTTNTACCATTGAAAGTTAGACANCCCGTCNNCCTTTCTNGATCTAACTACTCCA

consensusID : consensus_12102#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 283
fasta sequence 
                              [AAGTTCAGCAAGGGAGCTACGATCANAGGGNGTCATCNCCGTAAAGTTTTGGATNTGGAGGGTGTTCGCTTGCTCGGCGCTGCGCACGCCCCAAGTGACCNTTTTGNTACTNAAATCGATTGATTTAACCTGCTTNTATACAGTAGCCTGATAATGAGTNATACNCAAGGNCCCGCCAGCTTGCATAGTTGCATACTTGCATGCAAGGGGTATATACNTTTTTTTTTTGNACCNTTGAAAGTAAGACGAGCCTGTCATTCTTTTNTTGAAAAAAAAAAAAAAA]

[+] EMBL AU096916             [AAGTTCAGCAAGGGAGCTACGATCANAGGGNGTCATCNCCGTAAAGTTTTGGATNTGGAGGGTGTTCGCTTGCTCGGCGCTGCGCACGCCCCAAGTGACCNTTTTGNTACTNAAATCGATTGATTTAACCTGCTTNTATACAGTAGCCTGATAATGAGTNATACNCAAGGNCCCGCCAGCTTGCATAGTTGCATACTTGCATGCAAGGGGTATATACNTTTTTTTTTTGNACCNTTGAAAGTAAGACGAGCCTGTCATTCTTTTNTTGAAAAAAAAAAAAAAA]




>consensus_12102#2
AAGTTCAGCAAGGGAGCTACGATCANAGGGNGTCATCNCCGTAAAGTTTTGGATNTGGAG
GGTGTTCGCTTGCTCGGCGCTGCGCACGCCCCAAGTGACCNTTTTGNTACTNAAATCGAT
TGATTTAACCTGCTTNTATACAGTAGCCTGATAATGAGTNATACNCAAGGNCCCGCCAGC
TTGCATAGTTGCATACTTGCATGCAAGGGGTATATACNTTTTTTTTTTGNACCNTTGAAA
GTAAGACGAGCCTGTCATTCTTTTNTTGAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12102#0      CCGCATCCGCATCGTCGTCGGCAAGAGCAAACCTGTCGCGTCCCCATTCCAAGCCCGCCA 60
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      CTTTGTCCTCCTCCTCTGGCGCTCGGCTCGCCGGGAAGCAGAGCAGCAGCAGCGAACCCC 120
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      TCTCTCGCCGCAGATCCCAACGCCGCACACACACGCACACGCACCCGCACGCGCACGCAT 180
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      TTCCAGCTCGCGACGACGCCCATCTCGACGCGACGCGATCCCCGCCAAGTCAAACCCCAC 240
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      CCGTTATACTCTCCACTGCGATCTCAGAGGCAGAGGCAGAGCCCACGCCGCGCAGATCCA 300
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      CCTCTCTCCGCCCTGGATTCCGCGGAGCAGGAGGCGGTCAAGCCGTCGCCGCCGCCGCCG 360
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      GGCCGCATCCGCTACCGCACGCCCTCCTCCCCGGACCTCCTCCTCGCCCCGCCCTCCGAC 420
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      GCCGACGCCAAGAACATGCGCCGCTACTCCGCGCTGCCCGGCGGCGGCGCCCGCCCCGAC 480
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      ACGCTCGCCGACCGCCTCCACCGCTACCGCGGCGTCCTCCTCGTCATACTCGCCCCGCTC 540
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      GCCCTCGTCTCCCTCGTCCTCCTCCTCATGCCGCGCTCCCCCGCCTCCTCCTCCGCCGCC 600
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      GCCGGCAGGAGGTGGGGCCCCCTCGACGCCAACAAGTACGCCGTCATTTTCGACGCCGGG 660
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      AGCTCCGGAAGCCGCGTCCACGTCTTCCGCTTCGACGCCAACCTCGATCTGCTCCACATT 720
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      GGCGACCAGATCGAGCTCTTCGTCCAGAAAAAGCCGGGGCTTAGCGCGTACGCCAAGAAC 780
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      CCGCAGGAGGCTGCCAAATCGCTCGTCTCTCTCCTTGAGGATGCCAAACGAGTGGTTCCC 840
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      GCGGGATTGCGCGGCCAGACTCCTGTTAGAGTTGGGGCCACCGCCGGGCTAAGAGCGTTG 900
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      GGAGCAGAAAAATCAGAGGAGATTTTGCAAGCGGTCAGGGATCTTCTTCGCGAAAAGAGT 960
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      TCGTTCAAGACCCAACCGGATTGGGTTACAGTTCTTGATGGACCTCAGGAAGGCGCATAT 1020
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      GAATGGGTTACCATCAATTATCTGCTGGGGAAATTGGGAAAGACTTACGCAGACACAGTT 1080
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      GGAGTGGTTGATCTTGGAGGTGGATCTGTGCAGATGGCATATGCAATTGCAGAGAAGGAT 1140
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      GCAGTGAAGGCTCCTAAACCATCAGAGGGTGAAGATTCATATGTGAAGAAACTGTTTCTT 1200
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      AAAGGAACAACATATTATCTTTATGTTCACAGCTATTTGCATTATGGGTTGCTGGCTGCT 1260
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      AGAGCAGAGATCTTAAAAGCCGGCAATGGCAAAGGTTACAGCTACTGTACATTGGAGGGG 1320
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      CATCAAGGGCAATACAAATATGGCAATGGCAAATTTGAAGCGTCGGCTTCACCATCTGGT 1380
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      GCTAGTTATTCAAAATGCAGGGATGATGTAGTGAAAGCTCTTAAAGTTGACCAAGCATGC 1440
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      ACTCACATGAAATGTTCTTTTGGTGGCATTTGGAATGGTGGTGGTGGCGCTGGACAGAAG 1500
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      AATTTGTTTGTGGCATCATTTTTCTTCGACAGGGCAGCTGAGGCTGGATTTGTGAATCCC 1560
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      AAGGCACCTGTGGCTAAGGTTAAACCTTCAGATTTTGAAAAGGCTGCCAAGCGTGCATGT 1620
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      AAGTTAAACTTGAAGGACGCCGAAGCTGCCTACCCTGGTGTCCAAAAGGATAACATTCCA 1680
consensus_12102#1      ------------------------------------------------------------
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      TATATCTGCATGGATCTCGTTTACCAGTACACCTTACTTGTGGATGGATTTGGTGTTGGT 1740
consensus_12102#1      --------------------------------CTNACTTGTGGATGGATTTGGTGTTGGT 28
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      TCTCACCAAGA-GATGACCTTGGTAAAGAAAGTCCCTTACAGCAACGCGTTTGTGGAAGC 1799
consensus_12102#1      TCTCACCAAGAAGATGACCTTGGTAAAGAAAGTCCCTTACAGNAACGCGTTTGTGGAANC 88
consensus_12102#2      ------------------------------------------------------------
                                                                                   

consensus_12102#0      AGCATGGCCACTGGGAAGTGCCATTGAGGTTGCATCTTGATAGACAGACAGCAGAAAGTT 1859
consensus_12102#1      A-CATGGCCACTGGGAAGTGNCATTNAGGTTGCATCTTGATANACANACANCACACAGTN 147
consensus_12102#2      -------------------------------------------------------AAGTT 5
                                                                               *** 

consensus_12102#0      CAGCAAGGGAGCTACGATCAGAGGGCGTCATCGCCGTAAAGTTTTGGATCTGGAGGGTGT 1919
consensus_12102#1      CAGCNAGGGAGCTACGATCANAGGGCGTCATC-CCGTAAAGTTTTGGATCTGGANGGTGT 206
consensus_12102#2      CAGCAAGGGAGCTACGATCANAGGGNGTCATCNCCGTAAAGTTTTGGATNTGGAGGGTGT 65
                       **** *************** **** ****** **************** **** *****

consensus_12102#0      TCGCTTGCTCGGCGCTGCGCACGCCCCAAGTGACCATTTTGTTACTGAAATCGATTGATT 1979
consensus_12102#1      TCGCTTGCTCGGCGCTGCGCACGCCCCAANTGACCATTTTGTGACTGAAATCGATTGATT 266
consensus_12102#2      TCGCTTGCTCGGCGCTGCGCACGCCCCAAGTGACCNTTTTGNTACTNAAATCGATTGATT 125
                       ***************************** ***** *****  *** *************

consensus_12102#0      TAACCTGCTTCTATACAGTAGCCTGATAATGAGTGATACACAAGGACCCGCCAGCTTGCA 2039
consensus_12102#1      TAACCTGCTTCTATACNNTA-CCTGATAATGAGTGATACACAAGGACCCGCCNACTTGCA 325
consensus_12102#2      TAACCTGCTTNTATACAGTAGCCTGATAATGAGTNATACNCAAGGNCCCGCCAGCTTGCA 185
                       ********** *****  ** ************* **** ***** ******  ******

consensus_12102#0      TAGTTGCATACTTGCATGCAAGGGGTATATACATT-ATTTTTTGTACCATTGAAAGTAAG 2098
consensus_12102#1      TANTTGCATACTTGCATGCNANGGGTATATACATTTNNTTTTTNTACCATTGAAAGTTAG 385
consensus_12102#2      TAGTTGCATACTTGCATGCAAGGGGTATATACNTTTTTTTTTTGNACCNTTGAAAGTAAG 245
                       ** **************** * ********** **   *****  *** ******** **

consensus_12102#0      ACGAGCCTGTCATTCTTTTCTTGATCTATACTACTCCAGTTCTGTACCTCTGTTAGGGGC 2158
consensus_12102#1      AC-ANCCCGTCNNCCTTT-CTNGATCTA-ACTACTCCA---------------------- 420
consensus_12102#2      ACGAGCCTGTCATTCTTTTNTTGAAAAAAAAAAAAAAA---------------------- 283
                       ** * ** ***   ****  * **   * *  *    *                      

consensus_12102#0      AGTACAGTAGAGAAGAAAAAAAAAAAAAAAAGA 2191
consensus_12102#1      ---------------------------------
consensus_12102#2      ---------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)