These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12105#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2286 fasta sequence [AAAAAAAAACGGAAACCCTAGCCGCCACCACTCCCGTGACGGTGCGTCGCTTCCCCCTCCTCGCGCCGCCTCTCCCCGCCACACCGACACCCTGCGCAGTTGCGCCGCCGCTCCATCCTCCAGCACCTAACCTCGCCCCGACACCGCCACATGCTTCGCCGCATGTCCTCCACTTCCTCTCTCTTCTTGCTGCCGATGCCGCTGGGCTCGAGCTAGCGAGTAGGTCGATCTGGCTTTCAATCAGCGGCCAGATCTGGCGAAGAGAGGAGGAGCGCATGGCGGAGCGGGCCTGAAGTGTGTAGCTGGCAACGTCCCCGGTGTGGTGGTGGTTCACTGGTTCAGGTGGACAATGCCTCGAGCTTGCTAGAAATGGCGTTGGCATGGAGTTCTCCAAGGTGAGGTGGCGAGGTATATGTCTGGCGGTGCATGGCTTGATTTTCGAGTGATGTGGGTGCTCCATAAGCAGTGGCAAAGCTCCTATTTTTTTCTGGCCACCAGATGGAGGAGGAGTTGTCTCCCATCGCCTAGCCGTTCTCTGGATGCAGCAAGCCATCTCCCATTAGTATCTGATTTTTGCCGTTCTCTGGATGCAGCAAGCCATCTTCCATTGGTATCTGATTTTCGTTTGTATTCCCCACAAAAATTTGAGGTGTTTGTTTTGTGTGGTGTCCTGCCTACAAGGTGTTCGTTGTTTTCCCTACAAGCATGGGAATGTGGCAATCTTACATGACCTGTTAGTGTGTAAGCCTGAATGGTTTGTTGGGCTTTAGATTTGGATCCTAGCTTCCACTTAATTTGCCCTAAACATTTGAACCTACCTTAATGTTAGCAGTTAAAATATCTAATGAAATGCATCATTGAAAATATTCATTTGTAGTTAGCTCTGTAGATGCATGCATTTCATATAGATAATGATTGCTGATAACTGCTTCTTTTGCTAGAATATTTATGTGACTACCTAAATAGCTAACAAACTTCTCCAATTATAATCAGTCATTGCTTGTCCCTGTGATTCATAAATCTGTATGGTTCTTGTGATTCCTGATTGAGTTTTCAAGGAAAATACTAACATTAGGTGGGGAATACTGTGCAAATGATTCTGTCACAGCTGAAAGACACTCTAAAAAACCTCTCATGTATTTCACATTTGAATGCACCATTCAGGTGGGAAGGAGATTACACATTTGTTCATTTTATTTTCCTTTTTTTAGTTAGTTTGATTAGATTAAGGTGCTTAACGAGCTGGATTTGCTGTTAAATTTTAAATGATTTAAACAGCGGGCCATGGGTTCACTATTTGCTAGAGGTGTTCGCATCGTTTAATTCTTACATGCATTCCTTGGGGTCCTACATCTACAATCCTGGTTGCCTTTCTAATTTGAGATAATACAAAGCATGTACAGCCTATATGGCTCTATCGGTTTTCTGATCACAAAATTTGTCTGTATACATCTATTAGTTTTCTGATCACAAAATTTTTGTTACAACATTGAAAATGCTGGTCTATCTATGATTAGAAACTTTGCTGGTTATTTCTGTGTATAACTGCAATATGATGTTATCTATATTTGCGATACAATTCTGCAAATTGCTGATTACAGAAGTTGTCTTGCAAGAGTTGAAAAGGACATGTTTATGTGCTTAGATGTTATTCTGGTTGCTTGATCTGGCATCCTGTCATAATTTGTTTCTAACACTATCAGAACAAAAGGATAGAATATATGTTGCCTAAATGCTGTAATTTTCATGGAAAGAAGCTTGATGATATTGCCACCTCATCCCACAACTATCATGTAAGCTATATTGGTTGTATAGAAAACCAAGCATTTGAGAATTTTTTTTATTGTCAAAGATTCAAAAGCCTTGCCAACCCTTGGTATTGTTTGTATTTTCTGTATTTGGTCTATTTGGTAGTTAAGAAATTCCCTACAAGTCTGATTTGATACTTTATAAATTCATTCTCTTGCAGTCCTGGAGCATTGTTCTGCTTGACGGGTGGACAGGGATAAGTGTGGCCTTTTGTTCTGTAGCTGAAAAAGTGGAAGCTATGTAAGGAATGTTAGCTAGCATATGATCAGAGTGATCTAAGGTTTCAGTCTGTTGGATAGGATTGCGTTGGCTTAATGTTTAAGCTTTTGGGTATAGGTGGAGATCTCTTAGTAGCTTTCTTTTAAGCTGGTAACCCCCAAGCCTTTTGTCTTCTGAAAACATCTCTATGAAAATATTTACAGTTTGTAGTTCAGTAAAGCAATTGATCAACATGAGTATTATATTTTGATATGCGAA] [+] EMBL AK067735 [AAAAAAAAACGGAAACCCTAGCCGCCACCACTCCCGTGACGGTGCGTCGCTTCCCCCTCCTCGCGCCGCCTCTCCCCGCCACACCGACACCCTGCGCAGTTGCGCCGCCGCTCCATCCTCCAGCACCTAACCTCGCCCCGACACCGCCACATGCTTCGCCGCATGTCCTCCACTTCCTCTCTCTTCTTGCTGCCGATGCCGCTGGGCTCGAGCTAGCGAGTAGGTCGATCTGGCTTTCAATCAGCGGCCAGATCTGGCGAAGAGAGGAGGAGCGCATGGCGGAGCGGGCCTGAAGTGTGTAGCTGGCAACGTCCCCGGTGTGGTGGTGGTTCACTGGTTCAGGTGGACAATGCCTCGAGCTTGCTAGAAATGGCGTTGGCATGGAGTTCTCCAAGGTGAGGTGGCGAGGTATATGTCTGGCGGTGCATGGCTTGATTTTCGAGTGATGTGGGTGCTCCATAAGCAGTGGCAAAGCTCCTATTTTTTTCTGGCCACCAGATGGAGGAGGAGTTGTCTCCCATCGCCTAGCCGTTCTCTGGATGCAGCAAGCCATCTCCCATTAGTATCTGATTTTTGCCGTTCTCTGGATGCAGCAAGCCATCTTCCATTGGTATCTGATTTTCGTTTGTATTCCCCACAAAAATTTGAGGTGTTTGTTTTGTGTGGTGTCCTGCCTACAAGGTGTTCGTTGTTTTCCCTACAAGCATGGGAATGTGGCAATCTTACATGACCTGTTAGTGTGTAAGCCTGAATGGTTTGTTGGGCTTTAGATTTGGATCCTAGCTTCCACTTAATTTGCCCTAAACATTTGAACCTACCTTAATGTTAGCAGTTAAAATATCTAATGAAATGCATCATTGAAAATATTCATTTGTAGTTAGCTCTGTAGATGCATGCATTTCATATAGATAATGATTGCTGATAACTGCTTCTTTTGCTAGAATATTTATGTGACTACCTAAATAGCTAACAAACTTCTCCAATTATAATCAGTCATTGCTTGTCCCTGTGATTCATAAATCTGTATGGTTCTTGTGATTCCTGATTGAGTTTTCAAGGAAAATACTAACATTAGGTGGGGAATACTGTGCAAATGATTCTGTCACAGCTGAAAGACACTCTAAAAAACCTCTCATGTATTTCACATTTGAATGCACCATTCAGGTGGGAAGGAGATTACACATTTGTTCATTTTATTTTCCTTTTTTTAGTTAGTTTGATTAGATTAAGGTGCTTAACGAGCTGGATTTGCTGTTAAATTTTAAATGATTTAAACAGCGGGCCATGGGTTCACTATTTGCTAGAGGTGTTCGCATCGTTTAATTCTTACATGCATTCCTTGGGGTCCTACATCTACAATCCTGGTTGCCTTTCTAATTTGAGATAATACAAAGCATGTACAGCCTATATGGCTCTATCGGTTTTCTGATCACAAAATTTGTCTGTATACATCTATTAGTTTTCTGATCACAAAATTTTTGTTACAACATTGAAAATGCTGGTCTATCTATGATTAGAAACTTTGCTGGTTATTTCTGTGTATAACTGCAATATGATGTTATCTATATTTGCGATACAATTCTGCAAATTGCTGATTACAGAAGTTGTCTTGCAAGAGTTGAAAAGGACATGTTTATGTGCTTAGATGTTATTCTGGTTGCTTGATCTGGCATCCTGTCATAATTTGTTTCTAACACTATCAGAACAAAAGGATAGAATATATGTTGCCTAAATGCTGTAATTTTCATGGAAAGAAGCTTGATGATATTGCCACCTCATCCCACAACTATCATGTAAGCTATATTGGTTGTATAGAAAACCAAGCATTTGAGAATTTTTTTTATTGTCAAAGATTCAAAAGCCTTGCCAACCCTTGGTATTGTTTGTATTTTCTGTATTTGGTCTATTTGGTAGTTAAGAAATTCCCTACAAGTCTGATTTGATACTTTATAAATTCATTCTCTTGCAGTCCTGGAGCATTGTTCTGCTTGACGGGTGGACAGGGATAAGTGTGGCCTTTTGTTCTGTAGCTGAAAAAGTGGAAGCTATGTAAGGAATGTTAGCTAGCATATGATCAGAGTGATCTAAGGTTTCAGTCTGTTGGATAGGATTGCGTTGGCTTAATGTTTAAGCTTTTGGGTATAGGTGGAGATCTCTTAGTAGCTTTCTTTTAAGCTGGTAACCCCCAAGCCTTTTGTCTTCTGAAAACATCTCTATGAAAATATTTACAGTTTGTAGTTCAGTAAAGCAATTGATCAACATGAGTATTATATTTTGATATGCGAA] consensusID : consensus_12105#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1005 fasta sequence [GCCTCACCCTCCTCGCGCCGCCTCTCCCCGCCCCACCGATGCCCTGCAGCGCCGCTCCATCCTCCGACGCCTGTCCTGGCCCCGACACCGCCGTGCGTCGCCGCATGTCCTCCACTGCCTTTCTCTCTCTCTCTCCTTGCTGCCGGTGCCGCTGAGCTCGAGCTCGAGCTCAATGGTGAGAGGCTCAGTACGTCGACAACGAGTCGGTCGATCCAACATTCAATCGGGTTAGGTCTTCGTCCTTCTCACTACCTCGTCGTCGATTTACCTGTCTACTCAATACAAGCTCCACGCTGCCTTCCGATCTGGTGGTAGCTGCCGTGCAGCGA-TCGGATCTGGCGAAGGGAGGAGGAGCGCACGGCGGCGTCGACTTGAAGTAGGTTGCTGGCGGCGTCCCCAGCGTGGTGGTGTAGGCCNATGGGCCCAGAGGCGAACGCCTCGAGCTTGCGAGAAGATGGCGTCGGCACGGAGTTCTCGAAGGCGAGGAGTCGGTCTGNCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCTCCATGAGCAGTGGCAAGCTCCTGTTTTTTCTGGTCATCAGAGGGAGGAGGAGTTGTCTCCATCGCCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATCGCATCACGCCATCGTCCACTGGTAACCTCTCATTTATTGCACGTTTGGATGCAACATTTAGGTGGCAAGGAGATTATACATTGGCGATAGCATGGAGCAACAGGCAGAAATGCCATTCT-TTGTTCATTTTATTTTTCCTTTTTTTTAGTTTGATTAGATTATGGTGCTTAAGGAGCTGGATTTGCTGTTAAATCTTAAATGATTTAAACAGCGGGCCATGGGTTCACTATTGGCTANAGGTGTTCAGATCATTTAATTCTTACATGGCATTTCTTTTGGGTCCTGCATCTATAATCCTGGTTGTCTTTCTGAATTGAGATAATACAAAGCATGAGCCTATATGGCTCTTTCTGATCAAAAAAAAAAAAAA] [+] EMBL AU181589 [GCCTCACCCTCCTCGCGCCGCCTCTCCCCGCCCCACCGATGCCCTGCAGCGCCGCTCCATCCTCCGACGCCTGTCCTGGCCCCGACACCGCCGTGCGTCGCCGCATGTCCTCCACTGCCTTTCTCTCTCTCTCTCCTTGCTGCCGGTGCCGCTGAGCTCGAGCTCGAGCTCAATGGTGAGAGGCTCAGTACGTCGACAACGAGTCGGTCGATCCAACATTCAATCGGGTTAGGTCTTCGTCCTTCTCACTACCTCGTCGTCGATTTACCTGTCTACTCAATACAAGCTCCACGCTGCCTTCCGATCTGGTGGTAGCTGCCGTGCAGCGA TCGGATCTGGCGAAGGGAGGAGGAGCGCACGGCGGCGTCGACCTGAAGTAGGTTGCTGGCGGCGTCCCCAGCGTGGTGG ] [+] EMBL OSR04241A [ AGCGCCGCTCCATCCTCCGACGCCTGTCCTGGCCCCGACACCGCCGTGCGTCGCCGCATGTCCTCCACTGCC TCTCTCTCTCTCTCCTTTCTGCCGGTGCCGCTGAGCTCGAGCTCGAGCTCAATGGTGAGAGGCTCAGTACGTCGACAACGAGTCGGTCGATCCAACATTCAATCGGGTTAGGTCTTCGTCGTTCTCACTACCTCGTCGTCGATTTACCTGTCTCCTCAATACAAGCCCCACGCTGCCTTCCGATTTGGTGGCAGCTGCCGTGCAG GATTCGGATCTGGCGAAGGGAGGAGGAGCGCACGGCGGTGTCGACTTGAAGTAGGTTGCTGGCGG ] [+] EMBL AU101606 [ GACTTAAAGTAGGTTGCTGCCGGCGTCCCCAGCGTGGTGGTGTAGGCCNATGGGCCCAGAGGCGAACGCCTCGAGCTTGCGAGAAGATGGCGTCGGCACGGAGTTCTCGAAGGCGAGGAGTCGGTCTGNCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCTCCATGAGCAGTGGCAAGCTCCTGTTTTTTCTGGTCATCAGAGGGAGGAGGAGTTGTCTCCATCGCCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATCGCATCACGCCATCGTCCACTGGTAACCTCTCATTTATTGCACGTTTGGATGCAACATTTAGGTGGCAAGGAGATTATACATTGGCGATAGCATGGAGCAACAGGCAGAAATGCCATTCT TTGTTCATTTTATTTTTCCTTTTTTTTAGTTTGATTAGATTATGGTGCTTAAGGAGCTGGATTTGCTGTTAAATCTTAAATGATTTAAACAGCGGGCCATGGGTTCACTATTGGCTANAGGTGTTCAGATCATTTAATTCTTACATGGCATTTCTTTTGGGTCCTGCATCTATAATCCTGGTTGTCTTTCTGAATTGAGATAATACAAAGCATGAGCCTATATGGCTCTTTCTGATCAAAAAAAAAAAAAA] [+] EMBL AA751691 [ cGATCAACAGGCAGAAATGCCATTCTCCTGTTCATTTAATTTTTCCTTTTTTTTAGTTTGATTAGATTATGGTGCTTAAGGAGCTGGATTTGCTGTTAAATCTTAAATGATTTAAACAGCGGGCCATGGGTTCACTATTGGCTANAGGTGTTCAAATCATTTAATTCTTAaaaaaaaaa ] consensusID : consensus_12105#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 944 fasta sequence [CGTGACGGTGCGTCGCTTCCCCCTCCTCGCGCCGCCTCTCCCCGCCACACCGACACCCTGCGCAGTTGCGCCGCCGCTCCATCCTCCAGCACCTAACCTCGCCCCGACACCGCCACATGCCTCGCCGCATGTCCTCCACTTCCTCTCTCTTCTTGCTGCCGATGCCGCTGGGCTCGAGCTAGCGAGTAGGTCGATCTGGCTTTCAATCAGGTTAGGTCTCCGTCCTTAGCACCACCTCGTCGGCGATTTACCTTCGCCACAATCCAAGCCCCACGCTGCCTTCAGATCTGGTGGCATCTACCTTGCAGCGGCCAGATCTGGCGAAGAGAGGAGGAGCGCATGGCGGAGCGGGCCTGAAGTGTGTAGCTGGCAACGTCCCCGGTGTGGT-GGTGGTTCACTGGTTCAGGTGGACAATGCCTCGAGCTTGCTAGAAATGGCGTTGGCATGGAGTTCTCCAAGGTGAGGTGGCGAGGTATATGTCTGGCGGTGCATGGCTTGATTTTCGAGTGATGTGGGTGCTCCATAAGCAGTGGCAAAGCTCCTATTTTTTTTTGGCCACCAGATGGAGGAGGGAGTTGTTTCCCATCG-CTAGCCGTTCTNTGGATGCAGCAAGCCATCTCCCATTAGTATCTGATTTTTGCCGTTCTCTGGATGCAGCAAGCCATCTTCCATTGGTATCTGATTTTCGTTTGTATTCCCCACAAAAATTTGAGGTGTTTGTTTTGTGTGGTGTCCTGCCTACAAGGTGTTCGTTGTTTTCCCTACAAGCATGGGAATGTGGCAATCTTACATGACCTGTTAGTGTGTAAGCCTGAATGGTTTGTTGGGCTTTAGATTTGGATCCTAGCTTCCACTTAATTTGCCCTAAACATTTGAACCTACCTTAATGTTAGCAGTTAAAATATCTAATGAAATGCATCATTGAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF329396 [CGTGACGGTGCGTCGCTTCCCCCTCCTCGCGCCGCCTCTCCCCGCCACACCGACACCCTGCGCAGTTGCGCCGCCGCTCCATCCTCCAGCACCTAACCTCGCCCCGACACCGCCACATGCCTCGCCGCATGTCCTCCACTTCCTCTCTCTTCTTGCTGCCGATGCCGCTGGGCTCGAGCTAGCGAGTAGGTCGATCTGGCTTTCAATCAGGTTAGGTCTCCGTCCTTAGCACCACCTCGTCGGCGATTTACCTTCGCCACAATCCAAGCCCCACGCTGCCTTCAGATCTGGTGGCATCTACCTTGCAGCGGCCAGATCTGGCGAAGAGAGGAGGAGCGCATGGCGGAGCGGGCCTGAAGTGTGTAGCTGGCAACGTCCCCGGTGTGGTGGGTGGTTCACTGGTTCAGGTGGACAATGCCTCGAGCTTGCTAGAAATGGCGTTGGCATGGAGTTCTCCAAGGTGAGGTGGCGAGGTATATGTCTGGCGGTGCATGGCTTGATTTTCGAGTGATGTGGGTGCTCCATAAGCAGTGGCAAAGCT ] [+] EMBL OSC622 [ TCCGTCCTTAGCACCACCTCGTCGGCGATTTACCTTCGCCACAATCCAAGCCCCACGCTGCCTTCANATCTGGTGGCATCTACCTTGCAGCGGCCAGATCTGGCGAAGAGAGGAGGAGCGCATGGCGGAG GGGCCTGAAGTGTGTAGCTGGCAACGTCCCCGGTGTGGT GGTGGTTCACTGGTTCAGGTGGACAATGCCTCGAGCTTGCTAGAAATGGCGTTGGCATGGAGTTCTCCAAGGTGAGGTGGCGAGGTATATGTNTGGCGGTGCATGGCTTGATTTTCGAGTNATGTGGGTNCTCCATAAGCAGTGGCAAAGCTCCTATTTTTTTTTGGCCACCAGATGGAGGAGGGAGTTGTTTCCCATCG CTAGCCGTTCTNTGGATG ] [+] EMBL AU094430 [ ACGTCCCCGGTGTGGT GGTGGTTCACTGGTTCAGGTGGACAATGCCTCGAGCTTGCTAGAAATGGCGTTGGCATGGAGTTCNCCAAGGTGAGGTGGCGAGGTATATGTCTGGCGGTGCATGGCTTGATTTTCGAGTGATGTGGGTGCTCCATAAGCAGTGGCAAAGCTCCTATTTTTTTCTGGCCACCAGATGGAGGA GGAGTTGTCTCCCATCGCCTAGCCGTTCTCTGGATGCAGCAAGCCATCTCCCATTAGTATCTGATTTTTGCCGTTCTCTGGATGCAGCAAGCCATCTTCCATTGGTATCTGATTTTCGTTTGTATTCCCCACAAAAATTTGAGGTGTTTGTTTTGTGTGGTGTCCTGCCTACAAGGTGTTCGTTGTTTTCCCTACAAGCATGGGAATGTGGCAATCTTACATGACCTGTTAGTGTGTAAGCCTGAATGGTTTGTTGGGCTTTAGATTTGGATCCTAGCTTCCACTTAATTTGCCCTAAACATTTGAACCTACCTTAATGTTAGCAGTTAAAATATCTAATGAAATGCATCATTGAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12105#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 880 fasta sequence [CTCCTCGCGCCGCCTCTCCCCGCCCCACCAATGCCCTGCAGCGCCGCTCCATCCTCCGACGCCTGTCCTGGCCCCGACACCGCCGTGCGTCGCCGCATGTCCTCCACTGCCTCTCTCTCTCTCTCCTTTCTGCCGGTGCCGCTGAGCTCGAGCTCGAGCTCAATGGTGAGAGGCTCAGTACGTCGACAACGAGTCGGTCGATCCAACATTCAATCGGCGATCGGATCTGGCGAAGGGAGGAGGAGCGCACGGCGGTGTCGACTTGAAGTAGGTTGCTGGCGGCGTCCCCAGCGTGGTGGTGTAGGCCGATGGGCCCAGGAGGCGAACGCCTCGAGCTTGCGAGAAGATGGCGTCGGCACGGAGTTCTCGAAGGCGAGGAGTCGGTCTGGCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCTCCATGAGCAGTGGCAAGCTCCTGTTTTTTCTGGTCATCAGAGGGAGGAGGAGTTGTCTCCATCGCCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATCGCATCACGCCATCGTCCACTGGTATTTGATTTTCATTTCTATTCCCCACCAAGATTTGAGGTGTTGTTTTGTGTGATGCCCTGCCTACAAGGTGTTCGTTGTTTTTCCTACAAGCATGGTGATGTGGCGATCTTAAAGCTATCAGTTACGCCTGCATGACCTGTAATGTAACCTCTCATTTATTGCACGTTTGGATGCAACATTTAGGTGGCAAGGAGATTATACATTGGCGATAGCATGGAGCAACAGGCAGAAATGCCATTCTTTGTTCATTTTATTTTTCCTTTTTTTTAGTTTGATTAGATTATGGTGCTTAAGGAGCTGGATTTGCTGTTAAATCTTAAATGATTTAA] [+] EMBL AK070206 [CTCCTCGCGCCGCCTCTCCCCGCCCCACCAATGCCCTGCAGCGCCGCTCCATCCTCCGACGCCTGTCCTGGCCCCGACACCGCCGTGCGTCGCCGCATGTCCTCCACTGCCTCTCTCTCTCTCTCCTTTCTGCCGGTGCCGCTGAGCTCGAGCTCGAGCTCAATGGTGAGAGGCTCAGTACGTCGACAACGAGTCGGTCGATCCAACATTCAATCGGCGATCGGATCTGGCGAAGGGAGGAGGAGCGCACGGCGGTGTCGACTTGAAGTAGGTTGCTGGCGGCGTCCCCAGCGTGGTGGTGTAGGCCGATGGGCCCAGGAGGCGAACGCCTCGAGCTTGCGAGAAGATGGCGTCGGCACGGAGTTCTCGAAGGCGAGGAGTCGGTCTGGCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCTCCATGAGCAGTGGCAAGCTCCTGTTTTTTCTGGTCATCAGAGGGAGGAGGAGTTGTCTCCATCGCCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATCGCATCACGCCATCGTCCACTGGTATTTGATTTTCATTTCTATTCCCCACCAAGATTTGAGGTGTTGTTTTGTGTGATGCCCTGCCTACAAGGTGTTCGTTGTTTTTCCTACAAGCATGGTGATGTGGCGATCTTAAAGCTATCAGTTACGCCTGCATGACCTGTAATGTAACCTCTCATTTATTGCACGTTTGGATGCAACATTTAGGTGGCAAGGAGATTATACATTGGCGATAGCATGGAGCAACAGGCAGAAATGCCATTCTTTGTTCATTTTATTTTTCCTTTTTTTTAGTTTGATTAGATTATGGTGCTTAAGGAGCTGGATTTGCTGTTAAATCTTAAATGATTTAA] consensusID : consensus_12105#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [GTCGGCACGGAGTTCTCGAAGGCGAGGAGTCGGTTTCGCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCTCCATGAGCAGTGGCAAGCTCCTGTTTTTTTCTGGTCATCAGAGGGAGGAGGAGTTGTCTCCATCGTCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATCGCATCACGCCATCGTCCACTTGTATTTGATTTTCATTTCTATTCCCCACCAAGATTTGAGGTGTTTGTTTTGTGTGATGCCCTGCCTACAAGGTGTTCGTTGTTTTTCCTACAAGCATGGTGATGTGGCGATCTTAAAGCTATCAGTTACGCCTGCATGACCTGTAATGTAAGCCCGAATGATTTGTTAGGATCTAGATTTGGATCCTACTTTCCACTTAATTTCTCTAAACATTTGAAACTAAAAAAAAAAAAAAAAA] [+] EMBL CB000547 [GTCGGCACGGAGTTCTCGAAGGCGAGGAGTCGGTTTCGCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCTCCATGAGCAGTGGCAAGCTCCTGTTTTTTTCTGGTCATCAGAGGGAGGAGGAGTTGTCTCCATCGTCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATCGCATCACGCCATCGTCCACTTGTATTTGATTTTCATTTCTATTCCCCACCAAGATTTGAGGTGTTTGTTTTGTGTGATGCCCTGCCTACAAGGTGTTCGTTGTTTTTCCTACAAGCATGGTGATGTGGCGATCTTAAAGCTATCAGTTACGCCTGCATGACCTGTAATGTAAGCCCGAATGATTTGTTAGGATCTAGATTTGGATCCTACTTTCCACTTAATTTCTCTAAACATTTGAAACTAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12105#0 AAAAAAAAACGGAAACCCTAGCCGCCACCACTCCCGTGACGGTGCGTCGCTTCCCCCTCC 60 consensus_12105#2 ----------------------------------CGTGACGGTGCGTCGCTTCCCCCTCC 26 consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------GCCTCACCCTCC 12 consensus_12105#3 --------------------------------------------------------CTCC 4 consensus_12105#0 TCGCGCCGCCTCTCCCCGCCACACCGACACCCTGCGCAGTTGCGCCGCCGCTCCATCCTC 120 consensus_12105#2 TCGCGCCGCCTCTCCCCGCCACACCGACACCCTGCGCAGTTGCGCCGCCGCTCCATCCTC 86 consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 TCGCGCCGCCTCTCCCCGCCCCACCGATGCCCTG--------CAGCGCCGCTCCATCCTC 64 consensus_12105#3 TCGCGCCGCCTCTCCCCGCCCCACCAATGCCCTG--------CAGCGCCGCTCCATCCTC 56 consensus_12105#0 CAGCACCTAACCTCGCCCCGACACCGCCACATGCTTCGCCGCATGTCCTCCACTTCC--- 177 consensus_12105#2 CAGCACCTAACCTCGCCCCGACACCGCCACATGCCTCGCCGCATGTCCTCCACTTCC--- 143 consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 CGACGCCTGTCCTGGCCCCGACACCGCC--GTGCGTCGCCGCATGTCCTCCACTGCCTTT 122 consensus_12105#3 CGACGCCTGTCCTGGCCCCGACACCGCC--GTGCGTCGCCGCATGTCCTCCACTGCC--T 112 consensus_12105#0 -----TCTCTCTTCTTGCTGCCGATGCCGCTGGGCTCGAGCT------------------ 214 consensus_12105#2 -----TCTCTCTTCTTGCTGCCGATGCCGCTGGGCTCGAGCT------------------ 180 consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 CTCTCTCTCTCTCCTTGCTGCCGGTGCCGCTGAGCTCGAGCTCGAGCTCAATGGTGAGAG 182 consensus_12105#3 CTCTCTCTCTCTCCTTTCTGCCGGTGCCGCTGAGCTCGAGCTCGAGCTCAATGGTGAGAG 172 consensus_12105#0 ---------------AGCGAGTAGGTCGATCTGGCTTTCAATCAG--------------- 244 consensus_12105#2 ---------------AGCGAGTAGGTCGATCTGGCTTTCAATCAGGTTAGGTCTCCGTCC 225 consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 GCTCAGTACGTCGACAACGAGTCGGTCGATCCAACATTCAATCGGGTTAGGTCTTCGTCC 242 consensus_12105#3 GCTCAGTACGTCGACAACGAGTCGGTCGATCCAACATTCAATCGG--------------- 217 consensus_12105#0 ------------------------------------------------------------ consensus_12105#2 TTAGCACCACCTCGTCGGCGATTTACCT-TCGCCACAATCCAAGCCCCACGCTGCCTTCA 284 consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 TTCTCACTACCTCGTCGTCGATTTACCTGTCTACTCAATACAAGCTCCACGCTGCCTTCC 302 consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 ------------------------CGGCCAGATCTGGCGAAGAGAGGAGGAGCGCATGGC 280 consensus_12105#2 GATCTGGTGGCATCTACCTTGCAGCGGCCAGATCTGGCGAAGAGAGGAGGAGCGCATGGC 344 consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 GATCTGGTGGTAGCTGCCGTGCAGCGATCGGATCTGGCGAAGGGAGGAGGAGCGCACGGC 362 consensus_12105#3 ------------------------CGATCGGATCTGGCGAAGGGAGGAGGAGCGCACGGC 253 consensus_12105#0 GGAGCGGGCCTGAAGTGTGTAGCTGGCAACGTCCCCGGTGTGGTGGTG---GTTCACTGG 337 consensus_12105#2 GGAGCGGGCCTGAAGTGTGTAGCTGGCAACGTCCCCGGTGTGGTGGTG---GTTCACTGG 401 consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 GGCGTCGACTTGAAGTAGGTTGCTGGCGGCGTCCCCAGCGTGGTGGTGTAGGCCNATGGG 422 consensus_12105#3 GGTGTCGACTTGAAGTAGGTTGCTGGCGGCGTCCCCAGCGTGGTGGTGTAGGCCGATGGG 313 consensus_12105#0 TTCAGGTGGACAATGCCTCGAGCTTGCTAGAA-ATGGCGTTGGCATGGAGTTCTCCAAGG 396 consensus_12105#2 TTCAGGTGGACAATGCCTCGAGCTTGCTAGAA-ATGGCGTTGGCATGGAGTTCTCCAAGG 460 consensus_12105#4 --------------------------------------GTCGGCACGGAGTTCTCGAAGG 22 consensus_12105#1 CCCAG-AGGCGAACGCCTCGAGCTTGCGAGAAGATGGCGTCGGCACGGAGTTCTCGAAGG 481 consensus_12105#3 CCCAGGAGGCGAACGCCTCGAGCTTGCGAGAAGATGGCGTCGGCACGGAGTTCTCGAAGG 373 ** **** ********* **** consensus_12105#0 TGAGGTGGCGAGGTATATGTCTGGCGGTGCATGGCTTGATTTTCGAGTGATGTGGGTGCT 456 consensus_12105#2 TGAGGTGGCGAGGTATATGTCTGGCGGTGCATGGCTTGATTTTCGAGTGATGTGGGTGCT 520 consensus_12105#4 CGAGGAGTCG--------GTTTCGCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCT 74 consensus_12105#1 CGAGGAGTCG--------GTCTGNCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCT 533 consensus_12105#3 CGAGGAGTCG--------GTCTGGCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCT 425 **** * ** ** * *** ***** ********************** *** consensus_12105#0 CCATAAGCAGTGGCAAAGCTCCTATTTTTTTCTGGCCACCAGATGGAGGAGG-AGTTGTC 515 consensus_12105#2 CCATAAGCAGTGGCAAAGCTCCTATTTTTTTTTGGCCACCAGATGGAGGAGGGAGTTGTT 580 consensus_12105#4 CCATGAGCAGTGGCAA-GCTCCTGTTTTTTTCTGGTCATCAGAGGGAGGAGG-AGTTGTC 132 consensus_12105#1 CCATGAGCAGTGGCAA-GCTCCTGTTTTTT-CTGGTCATCAGAGGGAGGAGG-AGTTGTC 590 consensus_12105#3 CCATGAGCAGTGGCAA-GCTCCTGTTTTTT-CTGGTCATCAGAGGGAGGAGG-AGTTGTC 482 **** *********** ****** ****** *** ** **** ******** ****** consensus_12105#0 TCCCATCGCCTAGCCGTTCTCTGGATGCAGCAAGCCATCTCCCATTAGTATCTGATTTTT 575 consensus_12105#2 TCCCATCGC-TAGCCGTTCTNTGGATGCAGCAAGCCATCTCCCATTAGTATCTGATTTTT 639 consensus_12105#4 TCC-ATCGTCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATC-------------- 177 consensus_12105#1 TCC-ATCGCCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATC-------------- 635 consensus_12105#3 TCC-ATCGCCTAGCCGTTCTCTGGATGCATCAAGCTTGCCCTCATC-------------- 527 *** **** ********** ******** ***** * * *** consensus_12105#0 GCCGTTCTCTGGATGCAGCAAGCCATCTTCCATTGGTATCTGATTTTCGTTTGTATTCCC 635 consensus_12105#2 GCCGTTCTCTGGATGCAGCAAGCCATCTTCCATTGGTATCTGATTTTCGTTTGTATTCCC 699 consensus_12105#4 --------------GCATCACGCCATCGTCCACTTGTATTTGATTTTCATTTCTATTCCC 223 consensus_12105#1 --------------GCATCACGCCATCGTCCACTGGTAACC---TCTCATTT--ATTGCA 676 consensus_12105#3 --------------GCATCACGCCATCGTCCACTGGTATTTGATTTTCATTTCTATTCCC 573 *** ** ****** **** * *** * ** *** *** * consensus_12105#0 CACAAAAATTTGAGGTGTTTGTTTTGTGTGGTGTCCTGCCTACAAGGT-GTTCGTTGTTT 694 consensus_12105#2 CACAAAAATTTGAGGTGTTTGTTTTGTGTGGTGTCCTGCCTACAAGGT-GTTCGTTGTTT 758 consensus_12105#4 CACCAAGATTTGAGGTGTTTGTTTTGTGTGATGCCCTGCCTACAAGGT-GTTCGTTGTTT 282 consensus_12105#1 CGTTTGGATGCAACATTTAGGTGGCAAG-GAGATTATACATTGGCGATAGCATGGAGCAA 735 consensus_12105#3 CACCAAGATTTGAGGTGTTGTTTTGTGT-GATGCCCTGCCTACAAGGT-GTTCGTTGTTT 631 * ** * * * * * * * * * * * * * consensus_12105#0 TCCCTACAAGCATGGGAATGTGGCAATCTTACA-TGACCTGTTA-------GTG------ 740 consensus_12105#2 TCCCTACAAGCATGGGAATGTGGCAATCTTACA-TGACCTGTTA-------GTG------ 804 consensus_12105#4 TTCCTACAAGCATGGTGATGTGGCGATCTTAAAGCTATCAGTTACGCCTGCATGACCTGT 342 consensus_12105#1 CAGGCAGAAATGCCATTCTTTGTTCATTTTATTTTTCCTTTTTT---------------- 779 consensus_12105#3 TTCCTACAAGCATGGTGATGTGGCGATCTTAAAGCTA--TCAGT---------------- 673 * ** * ** ** *** consensus_12105#0 --TGTAAGCCTGAATGGTTTGTTGGGCTTT-AGATTTGGATCCTAGCTTCCACTTAATTT 797 consensus_12105#2 --TGTAAGCCTGAATGGTTTGTTGGGCTTT-AGATTTGGATCCTAGCTTCCACTTAATTT 861 consensus_12105#4 AATGTAAGCCCGAATGATTTGTTAGGATCT-AGATTTGGATCCTACTTTCCACTTAATTT 401 consensus_12105#1 ----TTAGTTTGATTAGATTATGGTGCTTAAGGAGCTGGATTTGCTGTTAAATCTTAAAT 835 consensus_12105#3 ----TACGCCTGCATGACCTGTAATGT----AACCTCTCATTTATTGC--ACGTTTGGAT 723 * * * * * * * ** * * consensus_12105#0 GCCCTAAACATTTGAACCTACCTTAATGTTAGCAGTTAAAAT--ATCTAATGAAATGCAT 855 consensus_12105#2 GCCCTAAACATTTGAACCTACCTTAATGTTAGCAGTTAAAAT--ATCTAATGAAATGCAT 919 consensus_12105#4 -CTCTAAACATTTGAAACTA----AAAAAAAAAAAAAAAA-------------------- 436 consensus_12105#1 GATTTAAACAGCGGGCCATGGGTTCAC--TATTGGCTANAGGTGTTCAGATCATTTAATT 893 consensus_12105#3 GCAACATTTAGGTGGCAAGGAGATTATA-CATTGGCGATAG---CATGGAGCAAC--AGG 777 * * * * * * * consensus_12105#0 CATTGAAAATATTCATTTGTAGTTAGCTCTGTAGATGCATGCATTTCATATAGATAATGA 915 consensus_12105#2 CATTGAAAAAAAAAAAAAAAAAAAA----------------------------------- 944 consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 CTTACATGGCATTTCTTTTGGGTCCTGCATCTATAATCCTGGTTGTCTTTCTGAATTGAG 953 consensus_12105#3 CAGAAATGCCATTCTTTGTTCATTTTAT-TTTTCCTTTTTTTTAGTTTGATTAGATTATG 836 consensus_12105#0 TTGCTGATAACTGCTTCTTTTGCTAGAATATTTATGTGACTACCTAAATAGCTAACAAAC 975 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ATAATACAAAGCATGAGCCTATATGGCTCTTTCTGATCAAAAAAAAAAAAAA-------- 1005 consensus_12105#3 GTGCTTAAGGAGCTGGATTTGC-TGTTAAATCTTAAATGATTTAA--------------- 880 consensus_12105#0 TTCTCCAATTATAATCAGTCATTGCTTGTCCCTGTGATTCATAAATCTGTATGGTTCTTG 1035 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 TGATTCCTGATTGAGTTTTCAAGGAAAATACTAACATTAGGTGGGGAATACTGTGCAAAT 1095 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 GATTCTGTCACAGCTGAAAGACACTCTAAAAAACCTCTCATGTATTTCACATTTGAATGC 1155 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 ACCATTCAGGTGGGAAGGAGATTACACATTTGTTCATTTTATTTTCCTTTTTTTAGTTAG 1215 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 TTTGATTAGATTAAGGTGCTTAACGAGCTGGATTTGCTGTTAAATTTTAAATGATTTAAA 1275 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 CAGCGGGCCATGGGTTCACTATTTGCTAGAGGTGTTCGCATCGTTTAATTCTTACATGCA 1335 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 TTCCTTGGGGTCCTACATCTACAATCCTGGTTGCCTTTCTAATTTGAGATAATACAAAGC 1395 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 ATGTACAGCCTATATGGCTCTATCGGTTTTCTGATCACAAAATTTGTCTGTATACATCTA 1455 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 TTAGTTTTCTGATCACAAAATTTTTGTTACAACATTGAAAATGCTGGTCTATCTATGATT 1515 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 AGAAACTTTGCTGGTTATTTCTGTGTATAACTGCAATATGATGTTATCTATATTTGCGAT 1575 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 ACAATTCTGCAAATTGCTGATTACAGAAGTTGTCTTGCAAGAGTTGAAAAGGACATGTTT 1635 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 ATGTGCTTAGATGTTATTCTGGTTGCTTGATCTGGCATCCTGTCATAATTTGTTTCTAAC 1695 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 ACTATCAGAACAAAAGGATAGAATATATGTTGCCTAAATGCTGTAATTTTCATGGAAAGA 1755 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 AGCTTGATGATATTGCCACCTCATCCCACAACTATCATGTAAGCTATATTGGTTGTATAG 1815 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 AAAACCAAGCATTTGAGAATTTTTTTTATTGTCAAAGATTCAAAAGCCTTGCCAACCCTT 1875 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 GGTATTGTTTGTATTTTCTGTATTTGGTCTATTTGGTAGTTAAGAAATTCCCTACAAGTC 1935 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 TGATTTGATACTTTATAAATTCATTCTCTTGCAGTCCTGGAGCATTGTTCTGCTTGACGG 1995 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 GTGGACAGGGATAAGTGTGGCCTTTTGTTCTGTAGCTGAAAAAGTGGAAGCTATGTAAGG 2055 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 AATGTTAGCTAGCATATGATCAGAGTGATCTAAGGTTTCAGTCTGTTGGATAGGATTGCG 2115 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 TTGGCTTAATGTTTAAGCTTTTGGGTATAGGTGGAGATCTCTTAGTAGCTTTCTTTTAAG 2175 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 CTGGTAACCCCCAAGCCTTTTGTCTTCTGAAAACATCTCTATGAAAATATTTACAGTTTG 2235 consensus_12105#2 ------------------------------------------------------------ consensus_12105#4 ------------------------------------------------------------ consensus_12105#1 ------------------------------------------------------------ consensus_12105#3 ------------------------------------------------------------ consensus_12105#0 TAGTTCAGTAAAGCAATTGATCAACATGAGTATTATATTTTGATATGCGAA 2286 consensus_12105#2 --------------------------------------------------- consensus_12105#4 --------------------------------------------------- consensus_12105#1 --------------------------------------------------- consensus_12105#3 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||