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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12109#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1363 fasta sequence
[GAGTAGAAAACTCAGTATTAATCAGCAACAAATGGCTTCAGATCACTAGACCAGAGTGAAGAGAGAAGCGCGTGTGTGTTGATTGTCGTAATGTCGATGGTTGTGGCCTCTTACGCTCCGGCGAGCCGGTCGCCGGTGACGCGGGCGTCCTCCGGCGCACGGCGGGTTAGCCATACACAGTCATGGAGGCCGCCGCCGCCGCCGTTCTTCCCGGCTTCCGCCGCCGTCAAGTGCAGGCGGCCTACTCTTCCGGTGGCACGTTCTGTTGGCCCGCCGGAGAAACATCGCCCTGTGCTCAACATTCCTCCCACCGCTCTACTGTACCAAGTCCCGCCACCGGA-GGGGAAAGAACGGTGGGAAATCAAGGATGACGAGGGCAACGTCCAGCTGTGGTTGC-AGGTG-CCCGGCCTGACGGAGGACGACCTGGAGATCACCACCACCGACGAATTGCTCGAGATCAAGCGTAAGGCCGGTCGCGGCGACCCGCGGCGGCTCGACGACGTCCAAGGCGTTGGCTCCTTCCATCTCCGGTTGCTCCTGACCAAGGAGTTTGTCAGCAGCCAGGTGACAGCCGAGCTGAAGGCCGGCATGCTGGAGGTGACCATCCCCAAGAACACAAACCTGCGTCGCACCGTAGTCAGGATAGGGCAGCAATCACAGTCTCCAGCTGCAGTTAGAACTGCGCAGCCGAAGGTCGTCGATCCTCCTCCTGCCAATTCGCCACCGAAGAATAATAATCTTGTGAGAAACACAAGTGTGCAGTCGAGGATTGATCCTCCTG-CG-AGAGAGTCG-CCGAAGAATGATCTTGGAGTAGGTATCAGTGTTCAACCGAATGATTCTCCTGCGAGAGAGCCACCCAAGAACAATCTTGCCGGAGGTAGAAATGTGCCAACGAAGGATGATCCTCCTGCAAGGGAGCTACCGAAGAATAATTTGGCCGGAGGTAGAAATGTGCCACCGAAGGATGATCCTCCTGCGAGAGAACCACCAAAGAATAATCTTG-CCGGAGGTAGAAATGTGGCACCCAAGGATGATCCTCCTGCCAATGAGGCACC-AAGG-AATAATCTTGCAGGAGGTACAGGTGTGCCGACGAAGGATCCTCCTAGAAATGCCAATGAGCCGCCAAAGAATCCTCCTGGTACCCGTGAAGCCAACCTAGGATGAGCAAATTAACCGTGGTGGGCATGTGAGAATAAAGATTAGAATAGATTAAACCCCATGAGAGGAGAGAAGATATGTTTATGTACATGGTTGTCATGCTCAGAGGGGCAATTTTCACTGCACGCAGTTGGTTCACTTTAATTTTTATGAAATAAA-GTTATTTGATCGATATGAAAAGCTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF334581 [GAGTAGAAAACTCAGTATTAATCAGCAACAAATGGCTTCAGATCACTAGACCAGAGTGAAGAGAGAAGCGCGTGTGTGTTGATTGTCGTAATGTCGATGGTTGTGGCCTCTTACGCTCCGGCGAGCCGGTCGCCGGTGACGCGGGCGTCCTCCGGCGCACGGCGGGTTAGCCATACACAGTCATGGAGGCCGCCGCCGCCGCCGTTCTTCCCGGCTTCCGCCGCCGTCAAGTGCAGGCGGCCTACTCTTCCGGTGGCACGTTCTGTTGGCCCGCCGGAGAAACATCGCCCTGTGCTCAACATTCCTCCCACCGCTCTACTGTACCAAGTCCCGCCACCGGA GGGGAAAGAACGGTGGGAAATCAAGGATGACGAGGGCAACGTCCAGCTGTGGTTGC AGGTG CCCGGCCTGACGG ]
[+] EMBL AK064267 [ CAGCAACAAATGGCTTCAGATCACTAGACCAGAGTGAAGAGAGAAGCGCGTGTGTGTTGATTGTCGTAATGTCGATGGTTGTGGCCTCTTACGCTCCGGCGAGCCGGTCGCCGGTGACGCGGGCGTCCTCCGGCGCACGGCGGGTTAGCCATACACAGTCATGGAGGCCGCCGCCGCCGCCGTTCTTCCCGGCTTCCGCCGCCGTCAAGTGCAGGCGGCCTACTCTTCCGGTGGCACGTTCTGTTGGCCCGCCGGAGAAACATCGCCCTGTGCTCAACATTCCTCCCACCGCTCTACTGTACCAAGTCCCGCCACCGGA GGGGAAAGAACGGTGGGAAATCAAGGATGACGAGGGCAACGTCCAGCTGTGGTTGC AGGTG CCCGGCCTGACGGAGGACGACCTGGAGATCACCACCACCGACGAATTGCTCGAGATCAAGCGTAAGGCCGGTCGCGGCGACCCGCGGCGGCTCGACGACGTCCAAGGCGTTGGCTCCTTCCATCTCCGGTTGCTCCTGACCAAGGAGTTTGTCAGCAGCCAGGTGACAGCCGAGCTGAAGGCCGGCATGCTGGAGGTGACCATCCCCAAGAACACAAACCTGCGTCGCACCGTAGTCAGGATAGGGCAGCAATCACAGTCTCCAGCTGCAGTTAGAACTGCGCAGCCGAAGGTCGTCGATCCTCCTCCTGCCAATTCGCCACCGAAGAATAATAATCTTGTGAGAAACACAAGTGTGCAGTCGAGGATTGATCCTCCTG CG AGAGAGTCG CCGAAGAATGATCTTGGAGTAGGTATCAGTGTTCAACCGAATGATTCTCCTGCGAGAGAGCCACCCAAGAACAATCTTGCCGGAGGTAGAAATGTGCCAACGAAGGATGATCCTCCTGCAAGGGAGCTACCGAAGAATAATTTGGCCGGAGGTAGAAATGTGCCACCGAAGGATGATCCTCCTGCGAGAGAACCACCAAAGAATAATCTTG CCGGAGGTAGAAATGTGGCACCCAAGGATGATCCTCCTGCCAATGAGGCACC AAGG AATAATCTTGCAGGAGGTACAGGTGTGCCGACGAAGGATCCTCCTAGAAATGCCAATGAGCCGCCAAAGAATCCTCCTGGTACCCGTGAAGCCAACCTAGGATGAGCAAATTAACCGTGGTGGGCATGTGAGAATAAAGATTAGAATAGATTAAACCCCATGAGAGGAGAGAAGATATGTTTATGTACATGGTTGTCATGCTCAGAGGGGCAATTTTCACTGCACGCAGTTGGTTCACTTTAATTTTTATGAAATAAA GTTATTTGATCGATATGATTTGCTAAAAAAA ]
[+] EMBL C91658 [ GCTTCAGATCACTAGACCAGAGTGAAGAGAGAAGCGCGTGTGTGTTGATTGTCGTAATGTCGATGGTTGTGGCCTCTTACGCTCCGGCGAGCCGGTCGCCGGTGACGCGGGCGTCCTCCGGCGCACGGCGGGTTAGCCATACACAGTCATGGAGGCCGCCGCCGCCGCCGTTCTTCCCGGCTTCCGCCGCCGTCAAGTGCAGGCGGCCTACTCTTCCGGTGGCACGTTCTGTTGGCCCGCCGGAGAAACATCGCCCTGTGCTCAACATTCCTCCCACCGCTCTACTGTACCAAGTCCCGCCANCGGA GGGGAAAGAACGGTGGGAAATCAAGGATGACGANGGCAACGTCCAGCTGTGGTTNC AGGTG CCCGGCTTGACGGAGGACGANCTGGAGATCACNACCACCGACGAATTNCTCGAGATTAAGCGTta ]
[+] EMBL AU173390 [ TCACTAGACCAGAGTGAAGAGAGAAGCGCGTGTGTGTTGATTGTCGTAATGTCGATGGTTGTGGCCTCTTACGCTCCGGCGAGCCGGTCGCCGGTGACGCGGGCGTCCTCCGGCGCACGGCGGGTTAGCCATACACAGTCATGGAGGCCGCCGCCGCCGCCGTTCTTCCCGGCTTCCGCCGCCGTCAAGTGCAGGCGGCCTACTCTTCCGGTGGCACGTTCTGTTGGCCCGCCGGAGAAACATCGCCCTGTGCTCAACATTCCTCCCACCGCTCTACTGTACCAAGTCCCGCCACCGGA GGGGAAAGAACGGTGGGAAATCAAGGATGACGAGGGCAACGTCCAGCTGTGGTTGC AGGTG CCCGGCCTGACGGAGGACGACCTGGAGATCACCACCACCGACGAATTGCTCGAGATCAAGCGTAAGGCCGG ]
[+] EMBL OSR19331A [ TCACTAGACCAGAGTGAAGAGAGAAGCGCGTGTGTNTTGATTGTCGTAATGTCGATGGTTGTGGCCTCTTACGCTCCGGCGAGCCGGTNGCCGGTGACGCGGGCGTCCTCCGGCGCACGGCGGGTTAGCCATACACAGTCATGGAGGCCGCCGCCGCCGCCGTTCTTCCCGGCTTCCGCCGCCGTCAAGTGCAGGCGGCCTACTCTTCCGGTGGCACGTTCTGTTGGCCCGCCGGAGAAACATCGCCCTGTGCTCAACATTCCTCCCACCGCTCTACTGTACCAAGTCCCGNCACCGGAGGGGGAAAGAACGGTGGGAAATCAAGGATGACGAGGGCAACGTCCAGCTGTGGTTTCAAGGTGCCCCGGCCTNACGGAGGACGACCTGGAGATCACCANCACCGACGAATTtgc ]
[+] EMBL AU029649 [ GATCCTCCTGCCGAAGAGAGTCGCCCGAAG ATGATCTTGGAGTAGGTATCAGTNTTCAACCG ATGATTCTCCTGCGAGAGAGCCACCCAAGAACAATCTTNCCGGAGGTAGAAATNTGCCAACGAAGGATGATCCTCCTGCAAGGGAGCTNCCGAAGAATAATTTGGCCGGAGGTAGAAATGTGCCACCGAAGGATGATCCT CTGCGAGAGAACCACCAAAGAATAATCTTGTCCGGAGGTAGAAATGTGGCACCCAAGGATGATCCTCCTGCCAATGAGGCACC AAGG AATAATCTTGCAGGAGGTACAGGTGTGCCGACGAAGGATCCTCCTAGAAATGCCAATGAGCCGCCAAAGAATCCTCCTGGTACCCGTGAAGCCAACCTAGGATGAGCAAATTAACCGTGGTGGGCATGTGAGAATAAAGATTAGAATAGATTAAACCCCATGAGAGGAGAGAAGATATGTTTATGTACATGGTTGTCATGCTCAGAGGGGCAATTTTCACTGCACGCAGTTGGTTCACTTTAATTTTTATGAAATAAA GTTATTTGATCGAAA AAAA AAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU031817 [ GTGCCAACGNAGGATGATCCTCCTGCTAGGGAGCTACCGAAGAATAATTTGGCCGGAGGTAGAAATGTGCCACCGAAGGATGATCCTCCTGCGANAGAACCACCAAAGAATAATCTTG CCGGAGGTAGAAATGTGGCACCCAAGGATGATCCTCCTGCCAATGAGGCACC AAGG AATAATCTTGCAGGAGGTACAGGTGTGCCGACGAAGGATCCTCCTAGAAATGCCAATGAGCCGCCAAAGAATCCTCCTGGTACCCGTGAAGCCAACCTAGGATGAGCAAATTAACCGTGGTGGGCATGTGAGAATAAAGATTAGAATAGATTAAACCCCATGAGAGGAGAGAAGATATGTTTATGTACATGGTTGTCATGCTCAGAGGGGCAATTTTCACTGCACGCAGTTGGTTCACTTTAATTTTTATGAAATAAA GTTATTTGATCGATATGAAAAaa ]
[+] EMBL AU162444 [ AGGCACCAAAGGAAATAATC TGCAGGAGTTACAGGTNTGCCGACGAAGGATCCTCCTAGAAATGCCAATGAGCCGCCAAAGAATCCTCCT GTACCCGTGAAGCCAACCTAGGATGAGCAAATTAACCGTGGTGGGCATGTGAGAATAAAGATTAGAATAGATTAAACCCCATGAGAGGAGAGAAGATATGTTTATGTACATGGTTGTCATGCTCAGAGGGGCAATTTTCACTGCACGCAGTTGGTTCACTTTAATTTTTATGAAATAAANGTTATTTGATCGATATGAAAA ]
consensusID : consensus_12109#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 630 fasta sequence
[AGGTAATCAGGGTTCAACCGGANTGNTTTTTCTGCGAGAGACCACGCCAAGAACAATTCTCCCGGAGGTAGAAATGTGCCAACGAAGGATGATCCTCCTGCAAGGGAGCTACCGAAGAATAATTTGGCCGGAGGTAGAAATGTGCCACCGAAGGATGATCCTCCTGCAAGGGAGCTGCCGAAGAATAATTTGGCCGGAGGTAGAAATGTGCCACCGAAGGATGATCCTCCTGCGAGAGAACCACCCAAGAATAATCTTGCCGGAGGTAGAAATGTGGCACCCAAGGATGATCCTCCTGCCAATGAGGCACCAAGGAATAATCTTGCAGGAGGTACAGGTGTGCCGACGAAGGATCCTCCTAGAAATGCCAATGAGCCGCCCAAGAATCCTCCTGGTACCCGTGAAGCCAACCTAGGATGAGCAAATTAACCGTGGTGGGCATGTGAGAATAAAGATTAGAATAGATTAAACCCCATGAGAGGAGAGAAGATATGTTTATGTATATGGTTGTCATGCTCAGAGTGGGCAATTTTCACTGCACGCAGTTGGTTCACTTTAATTTTTATGAAATAAAGTTATTTGATCGAAAAAAAAAACTATGGTCGCCCAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI806529 [AGGTAATCAGGGTTCAACCGGANTGNTTTTTCTGCGAGAGACCACGCCAAGAACAATTCTCCCGGAGGTAGAAATGTGCCAACGAAGGATGATCCTCCTGCAAGGGAGCTACCGAAGAATAATTTGGCCGGAGGTAGAAATGTGCCACCGAAGGATGATCCTCCTGCAAGGGAGCTGCCGAAGAATAATTTGGCCGGAGGTAGAAATGTGCCACCGAAGGATGATCCTCCTGCGAGAGAACCACCCAAGAATAATCTTGCCGGAGGTAGAAATGTGGCACCCAAGGATGATCCTCCTGCCAATGAGGCACCAAGGAATAATCTTGCAGGAGGTACAGGTGTGCCGACGAAGGATCCTCCTAGAAATGCCAATGAGCCGCCCAAGAATCCTCCTGGTACCCGTGAAGCCAACCTAGGATGAGCAAATTAACCGTGGTGGGCATGTGAGAATAAAGATTAGAATAGATTAAACCCCATGAGAGGAGAGAAGATATGTTTATGTATATGGTTGTCATGCTCAGAGTGGGCAATTTTCACTGCACGCAGTTGGTTCACTTTAATTTTTATGAAATAAAGTTATTTGATCGAAAAAAAAAA ]
[-] EMBL CF334582 [ AGCCGCCAAAGAATCCTCTTGGTACCCGTGAAGCCACCTTAGGATGAGCAAATTACCCGTGGTGGGCATGTGAGAATAAAGATTAGAATAGATTAACCCCCATGAGAGGAGAGAAGATATGTTTATGTACATGGTTGTCATGCTCAAAG GGGCAATTTTCACTGCACGCAGTTGGTTCACTTTAATTTTTATGAAATAAAGTTATTTGATCGATATGATTTGCTATGGTCGCCCAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12109#0 GAGTAGAAAACTCAGTATTAATCAGCAACAAATGGCTTCAGATCACTAGACCAGAGTGAA 60
consensus_12109#1 ------------------------------------------------------------
consensus_12109#0 GAGAGAAGCGCGTGTGTGTTGATTGTCGTAATGTCGATGGTTGTGGCCTCTTACGCTCCG 120
consensus_12109#1 ------------------------------------------------------------
consensus_12109#0 GCGAGCCGGTCGCCGGTGACGCGGGCGTCCTCCGGCGCACGGCGGGTTAGCCATACACAG 180
consensus_12109#1 ------------------------------------------------------------
consensus_12109#0 TCATGGAGGCCGCCGCCGCCGCCGTTCTTCCCGGCTTCCGCCGCCGTCAAGTGCAGGCGG 240
consensus_12109#1 ------------------------------------------------------------
consensus_12109#0 CCTACTCTTCCGGTGGCACGTTCTGTTGGCCCGCCGGAGAAACATCGCCCTGTGCTCAAC 300
consensus_12109#1 ------------------------------------------------------------
consensus_12109#0 ATTCCTCCCACCGCTCTACTGTACCAAGTCCCGCCACCGGAGGGGAAAGAACGGTGGGAA 360
consensus_12109#1 ------------------------------------------------------------
consensus_12109#0 ATCAAGGATGACGAGGGCAACGTCCAGCTGTGGTTGCAGGTGCCCGGCCTGACGGAGGAC 420
consensus_12109#1 ------------------------------------------------------------
consensus_12109#0 GACCTGGAGATCACCACCACCGACGAATTGCTCGAGATCAAGCGTAAGGCCGGTCGCGGC 480
consensus_12109#1 ------------------------------------------------------------
consensus_12109#0 GACCCGCGGCGGCTCGACGACGTCCAAGGCGTTGGCTCCTTCCATCTCCGGTTGCTCCTG 540
consensus_12109#1 ------------------------------------------------------------
consensus_12109#0 ACCAAGGAGTTTGTCAGCAGCCAGGTGACAGCCGAGCTGAAGGCCGGCATGCTGGAGGTG 600
consensus_12109#1 ------------------------------------------------------------
consensus_12109#0 ACCATCCCCAAGAACACAAACCTGCGTCGCACCGTAGTCAGGATAGGGCAGCAATCACAG 660
consensus_12109#1 ------------------------------------------------------------
consensus_12109#0 TCTCCAGCTGCAGTTAGAACTGCGCAGCCGAAGGTCGTCGATCCTCCTCCTGCCAATTCG 720
consensus_12109#1 ------------------------------------------------------------
consensus_12109#0 CCACCGAAGAATAATAATCTTGTGAGAAACACAAGTGTGCAGTCGAGGATTGATCCTCCT 780
consensus_12109#1 ------------------------AGGTAATCAGG-GTTCAACC--GGANTGNTTTTTCT 33
** * ** * ** ** * *** ** * * **
consensus_12109#0 GCGAGAGAGTCGCCGAAGAATGATCTTGGAGTAGGTATCAGTGTTCAACCGAA---TGAT 837
consensus_12109#1 GCGAGAGACCACGCCAAGAACAATTCTCCCGGAGGTAGAAATGTGCCAACGAAGGATGAT 93
******** * ***** ** * * ***** * *** * * **** ****
consensus_12109#0 TCTCCTGCGAGAGAGCCACCCAAGAACAATCTTGCCGGAGGTAGAAATGTGCCAACGAAG 897
consensus_12109#1 CCTCCTGCAAGGGAGCTACCGAAGAATAATTTGGCCGGAGGTAGAAATGTGCCACCGAAG 153
******* ** **** *** ***** *** * ********************* *****
consensus_12109#0 GATGATCCTCCTGCAAGGGAGCTACCGAAGAATAATTTGGCCGGAGGTAGAAATGTGCCA 957
consensus_12109#1 GATGATCCTCCTGCAAGGGAGCTGCCGAAGAATAATTTGGCCGGAGGTAGAAATGTGCCA 213
*********************** ************************************
consensus_12109#0 CCGAAGGATGATCCTCCTGCGAGAGAACCACCAAAGAATAATCTTGCCGGAGGTAGAAAT 1017
consensus_12109#1 CCGAAGGATGATCCTCCTGCGAGAGAACCACCCAAGAATAATCTTGCCGGAGGTAGAAAT 273
******************************** ***************************
consensus_12109#0 GTGGCACCCAAGGATGATCCTCCTGCCAATGAGGCACCAAGGAATAATCTTGCAGGAGGT 1077
consensus_12109#1 GTGGCACCCAAGGATGATCCTCCTGCCAATGAGGCACCAAGGAATAATCTTGCAGGAGGT 333
************************************************************
consensus_12109#0 ACAGGTGTGCCGACGAAGGATCCTCCTAGAAATGCCAATGAGCCGCCAAAGAATCCTCCT 1137
consensus_12109#1 ACAGGTGTGCCGACGAAGGATCCTCCTAGAAATGCCAATGAGCCGCCCAAGAATCCTCCT 393
*********************************************** ************
consensus_12109#0 GGTACCCGTGAAGCCAACCTAGGATGAGCAAATTAACCGTGGTGGGCATGTGAGAATAAA 1197
consensus_12109#1 GGTACCCGTGAAGCCAACCTAGGATGAGCAAATTAACCGTGGTGGGCATGTGAGAATAAA 453
************************************************************
consensus_12109#0 GATTAGAATAGATTAAACCCCATGAGAGGAGAGAAGATATGTTTATGTACATGGTTGTCA 1257
consensus_12109#1 GATTAGAATAGATTAAACCCCATGAGAGGAGAGAAGATATGTTTATGTATATGGTTGTCA 513
************************************************* **********
consensus_12109#0 TGCTCAGAG-GGGCAATTTTCACTGCACGCAGTTGGTTCACTTTAATTTTTATGAAATAA 1316
consensus_12109#1 TGCTCAGAGTGGGCAATTTTCACTGCACGCAGTTGGTTCACTTTAATTTTTATGAAATAA 573
********* **************************************************
consensus_12109#0 AGTTATTTGATCGATATGAAAAGCTA---------AAAAAAAAAAAAAAAAAAAAA- 1363
consensus_12109#1 AGTTATTTGATCGAAAAAAAAAACTATGGTCGCCCAAAAAAAAAAAAAAAAAAAAAA 630
************** * **** *** *********************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||