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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 847 fasta sequence
[CGTCTCTCCACACCGCGCGCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCGCGACTTGTCCGCGGAGGACGTGG-CCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGTCTTGCTGGCTAAAAAAAAAAAAAAAAAAAATCGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT]
[+] EMBL AK107831 [CGTCTCTCCACACCGCGCGCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCGCGACTTGTCCGCGGAGGACGTGG CCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGT ]
[-] EMBL CB663461 [ CGCGCCGCAGNTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTNGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCGCGACTTGTCCGCGGAGGACGTGG CCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATC ]
[-] EMBL CB683442 [ CTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTNGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCGCGACTTGTCCGCGGAGGACGTGG CCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGGGGATGATGATCGATAGCTATAAATAGTGATCAaaaaaaaga ]
[+] EMBL BE229530 [ AATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCGCGACTTGTCCGCGGAGGACGTGGCCCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCSACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCSTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCC ]
[-] EMBL CF324858 [ AAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGTCTTGCTGGCTAAAAAAAAAAAAAAAAAAAATCGAG ]
[+] EMBL CF197296 [ GTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTGACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCGGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGTaa ]
[+] EMBL CF334684 [ CGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGTCTa ]
[+] EMBL CF302241 [ CAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGTCTTGCNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT]
[+] EMBL CF334265 [ CAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCA ]
consensusID : consensus_12117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[GGTTATACCCGCGCCCACCACCTGTTCGACACCGAACTCAACCGTCTCTCCACACCGCGCGCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCACGTCGCCTCANCCCCCGCGNTTGTCCGCGGAGGACGTGGCGCGAGGAGGCGCGTCGCGCCAANTCGGGAGCNGTCGANTACGCGCCGTCGGTTACACGTATGAAGCGCCACTGCATAAGGATTAGGCTTTA]
[+] EMBL AU163540 [GGTTATACCCGCGCCCACCACCTGTTCGACACCGAACTCAACCGTCTCTCCACACCGCGCGCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCACGTCGCCTCANCCCCCGCGNTTGTCCGCGGAGGACGTGGCGCGAGGAGGCGCGTCGCGCCAANTCGGGAGCNGTCGANTACGCGCCGTCGGTTACACGTATGAAGCGCCACTGCATAAGGATTAGGCTTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12117#0 ------------------------------------------CGTCTCTCCACACCGCGC 18
consensus_12117#1 GGTTATACCCGCGCCCACCACCTGTTCGACACCGAACTCAACCGTCTCTCCACACCGCGC 60
******************
consensus_12117#0 GCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTC 78
consensus_12117#1 GCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTC 120
************************************************************
consensus_12117#0 CACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCT 138
consensus_12117#1 CACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCT 180
************************************************************
consensus_12117#0 CGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCG 198
consensus_12117#1 CGGGC-GCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGC-ACGTCGCC-TCANCCCCCG 237
***** ********************************** ******** *** ******
consensus_12117#0 CGACTTGTCCGCGGAGGACGTGGCCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAA 258
consensus_12117#1 CGN-TTGTCCGCGGAGGACGTGGC-GCG-AGGAGGCG--CGTCGCGCC--AANTCGGGA- 289
** ******************** *** ******* ********* * ******
consensus_12117#0 GCGCGTGCGAGT-CACGGCGCCCGT-GCGCGTGTACCACGTCATGAAGGCGCCCGACCTG 316
consensus_12117#1 --GCNGTCGANTACGCGCCGTCGGTTACACGTATGAAGCGCCAC---TGCATAAGGATTA 344
** *** * * ** ** * ** * *** * ** ** ** * *
consensus_12117#0 GACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGC 376
consensus_12117#1 GGCTTTA----------------------------------------------------- 351
* * * *
consensus_12117#0 ATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAG 436
consensus_12117#1 ------------------------------------------------------------
consensus_12117#0 CCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGAT 496
consensus_12117#1 ------------------------------------------------------------
consensus_12117#0 CGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGC 556
consensus_12117#1 ------------------------------------------------------------
consensus_12117#0 TGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAG 616
consensus_12117#1 ------------------------------------------------------------
consensus_12117#0 TAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGAC 676
consensus_12117#1 ------------------------------------------------------------
consensus_12117#0 ATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATA 736
consensus_12117#1 ------------------------------------------------------------
consensus_12117#0 GTGATCATTCTGTTGTCTTGCTGGCTAAAAAAAAAAAAAAAAAAAATCGAGAAAAAAAAA 796
consensus_12117#1 ------------------------------------------------------------
consensus_12117#0 AAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT 847
consensus_12117#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||