Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12117 cluster # 12117       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12117#0 length = 847 sequences # 9  
consensus_12117#1 length = 351 sequences # 1  

consensusID : consensus_12117#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 847
fasta sequence
                              [CGTCTCTCCACACCGCGCGCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCGCGACTTGTCCGCGGAGGACGTGG-CCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGTCTTGCTGGCTAAAAAAAAAAAAAAAAAAAATCGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT]

[+] EMBL AK107831             [CGTCTCTCCACACCGCGCGCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCGCGACTTGTCCGCGGAGGACGTGG CCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGT                                                                                               ]
[-] EMBL CB663461             [                   CGCGCCGCAGNTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTNGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCGCGACTTGTCCGCGGAGGACGTGG CCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATC                                                                                                                             ]
[-] EMBL CB683442             [                                   CTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTNGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCGCGACTTGTCCGCGGAGGACGTGG CCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGGGGATGATGATCGATAGCTATAAATAGTGATCAaaaaaaaga                                                                                               ]
[+] EMBL BE229530             [                                          AATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCGCGACTTGTCCGCGGAGGACGTGGCCCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCSACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCSTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CF324858             [                                                                                                                                                                                                                                                                 AAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGTCTTGCTGGCTAAAAAAAAAAAAAAAAAAAATCGAG                                                            ]
[+] EMBL CF197296             [                                                                                                                                                                                                                                                                       GTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTGACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCGGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGTaa                                                                                             ]
[+] EMBL CF334684             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGTCTa                                                                                            ]
[+] EMBL CF302241             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCATTCTGTTGTCTTGCNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT]
[+] EMBL CF334265             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATAGTGATCA                                                                                                        ]


>consensus_12117#0 CGTCTCTCCACACCGCGCGCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGC AGCCTTGGCGCCGCCGTCCACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGC CGCCGCCGCCCGATGCCTCGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCA CGTCGCCCTCACCCCCCGCGACTTGTCCGCGGAGGACGTGGCCGCGGAGGAGGCCGCCGT CGCGCCCAAGATCGGGAAGCGCGTGCGAGTCACGGCGCCCGTGCGCGTGTACCACGTCAT GAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGT CTGGAAGGGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGT GGAGGGCCAGGACAAGCCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTT CATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATA CAATAATGACCGCAGCTGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGA GAGAGACTGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTT CCTCCTCCAGTTCGACATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGA TCGATAGCTATAAATAGTGATCATTCTGTTGTCTTGCTGGCTAAAAAAAAAAAAAAAAAA AATCGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGT ACCGTAT



consensusID : consensus_12117#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence
                              [GGTTATACCCGCGCCCACCACCTGTTCGACACCGAACTCAACCGTCTCTCCACACCGCGCGCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCACGTCGCCTCANCCCCCGCGNTTGTCCGCGGAGGACGTGGCGCGAGGAGGCGCGTCGCGCCAANTCGGGAGCNGTCGANTACGCGCCGTCGGTTACACGTATGAAGCGCCACTGCATAAGGATTAGGCTTTA]

[+] EMBL AU163540             [GGTTATACCCGCGCCCACCACCTGTTCGACACCGAACTCAACCGTCTCTCCACACCGCGCGCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTCCACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCTCGGGCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCACGTCGCCTCANCCCCCGCGNTTGTCCGCGGAGGACGTGGCGCGAGGAGGCGCGTCGCGCCAANTCGGGAGCNGTCGANTACGCGCCGTCGGTTACACGTATGAAGCGCCACTGCATAAGGATTAGGCTTTA]


>consensus_12117#1 GGTTATACCCGCGCCCACCACCTGTTCGACACCGAACTCAACCGTCTCTCCACACCGCGC GCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTC CACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCT CGGGCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCACGTCGCCTCANCCCCCGCGN TTGTCCGCGGAGGACGTGGCGCGAGGAGGCGCGTCGCGCCAANTCGGGAGCNGTCGANTA CGCGCCGTCGGTTACACGTATGAAGCGCCACTGCATAAGGATTAGGCTTTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12117#0      ------------------------------------------CGTCTCTCCACACCGCGC 18
consensus_12117#1      GGTTATACCCGCGCCCACCACCTGTTCGACACCGAACTCAACCGTCTCTCCACACCGCGC 60
                                                                 ******************

consensus_12117#0      GCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTC 78
consensus_12117#1      GCGCGCCGCAGCTTAGCCTCTCGCAATGGCGACGACCACCGCAGCCTTGGCGCCGCCGTC 120
                       ************************************************************

consensus_12117#0      CACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCT 138
consensus_12117#1      CACCTCGACGTCCTCCGTCCTCCTCCCCTCAGCCGCCGCCGCCGCCGCCGCCCGATGCCT 180
                       ************************************************************

consensus_12117#0      CGGGCCGCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGCCACGTCGCCCTCACCCCCCG 198
consensus_12117#1      CGGGC-GCTGCCCCGCCGCGCGCGCCTCCGGACCGCGCGC-ACGTCGCC-TCANCCCCCG 237
                       ***** ********************************** ******** *** ******

consensus_12117#0      CGACTTGTCCGCGGAGGACGTGGCCGCGGAGGAGGCCGCCGTCGCGCCCAAGATCGGGAA 258
consensus_12117#1      CGN-TTGTCCGCGGAGGACGTGGC-GCG-AGGAGGCG--CGTCGCGCC--AANTCGGGA- 289
                       **  ******************** *** *******   *********  *  ****** 

consensus_12117#0      GCGCGTGCGAGT-CACGGCGCCCGT-GCGCGTGTACCACGTCATGAAGGCGCCCGACCTG 316
consensus_12117#1      --GCNGTCGANTACGCGCCGTCGGTTACACGTATGAAGCGCCAC---TGCATAAGGATTA 344
                         **   *** * * ** ** * **  * *** *    ** **     **    *   * 

consensus_12117#0      GACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAGGGGAAGCGC 376
consensus_12117#1      GGCTTTA----------------------------------------------------- 351
                       * * * *                                                     

consensus_12117#0      ATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAG 436
consensus_12117#1      ------------------------------------------------------------
                                                                                   

consensus_12117#0      CCGGTCAGGTTCTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGAT 496
consensus_12117#1      ------------------------------------------------------------
                                                                                   

consensus_12117#0      CGATCAGTAACCGTGACCAAGTAAGCCTAGCGCCTTTTGTTATACAATAATGACCGCAGC 556
consensus_12117#1      ------------------------------------------------------------
                                                                                   

consensus_12117#0      TGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGACTGAAGAGAG 616
consensus_12117#1      ------------------------------------------------------------
                                                                                   

consensus_12117#0      TAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGAC 676
consensus_12117#1      ------------------------------------------------------------
                                                                                   

consensus_12117#0      ATCTAATTTTTCAGATGTGGGAAATGTTTGGATGATGATGATGATCGATAGCTATAAATA 736
consensus_12117#1      ------------------------------------------------------------
                                                                                   

consensus_12117#0      GTGATCATTCTGTTGTCTTGCTGGCTAAAAAAAAAAAAAAAAAAAATCGAGAAAAAAAAA 796
consensus_12117#1      ------------------------------------------------------------
                                                                                   

consensus_12117#0      AAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT 847
consensus_12117#1      ---------------------------------------------------
                                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)