cluster # 12118

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Oryza sativa
cluster # 12118 cluster # 12118 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12118#0 length = 1720 sequences # 6
consensus_12118#1 length = 738 sequences # 2

consensus_12118#2 length = 601 sequences # 1
consensus_12118#3 length = 295 sequences # 1

consensusID : consensus_12118#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1720
fasta sequence

                              [ACACAAGAGCGAAAATTCCATTACTCGATAACCAGAGGGCGGATCTGCAAAAAGCCTCCTCCTCTCCACCCCTCGTCGGCGGCATCTCGTCGCCCCCGCCTCGAAGCTTCCAGAAGCTTCTCCTCCTCTCTCCTCCCCTCCCCATGGCGCGGCGGGGCCACCACCACCACCTGGCGGAGGTGGCCCTCCTCGCGTCGGCCTCCGAGGACCTCGCCGCCGTGGGCGCCGGCGAGAGGGAGGGGTGGCTCGACGACCCCGCCGTGCTCCCCTCCCTCGCGCCGCGCGCGCGCGCCCTCGCCGTCGCCAGCGCGGCGAGGTCCGTGCTCGCGGTTGTCCCGGTCGCCGGAGTAGGCGGTGGGGTCACGGTGAGGCCCGCGCTGGGGCCCGACGACGGCCGGATCTCCGCGGTGGAGTGGGTCCCGCTCGTCGGGGAGGACGCCGAGGAGGCTGGTGGGGAGGGAGTGGCCGTCGCCGTGGGCACCGACGCCGGGTGGCTTCTGTTCTACTCTCTCGCAGGCGATCTACTGCACAAGCGGAGTATTTATCCTTCAAAGATACTGAAACTTAACTTCCGTGAGAGGAAGGAAAACGCCTGGGAAGATTCGGGTTCAGATGAGCTTTCTGTGGTTTTCCCTGGTGTTATTGCACGTTTTGATGGTGCTGACCTTCAGAACATGCTTCAAAAATCATTACATGAAGTTAAATCACACCTGTGGAAAGACAAATCTGAACAGGAAGATGCTGAGGAAGATAGTTCCTTTGGAAGAATACCTTTTCAAATTTGGAATGTAAGCAAATTCAGTTCTTGTGCAGATGCTGCAATTGTTGGGCTGATGCCACCTCCCTTGCTGGAACTTCAGTCGAGTCAGCGCCATTATTGTGCAATTACAGTTGGAGAGGATGCTGTAGTTTCTGCATATAGGTTATCAGAAGACAGAAGCAGGTCAATTGTTGGAGCAATTTTATCAAGAGGTGTTGCTGCAACATTTTCAACAATATCATCTCTGTCTAAAATTATATGGCGGAGCGAACCATC-ACCAACC-AAG-AAATCA-CGTCCTAAGCC-TCAGTCCTTTGC-AAAAACATCACCACTAACTTGCTTG-AAAGATTC-ACCGAGGAAGGGTGAACGGCTTACACTAT-CTCC-AAGTGGTACATTGGCTG-CCATAACTGATTCTCTTGGCCGCATTCTACTATTGGATACTCATGCCCTTGTGGCTGTACGGCTGTGGAAGGGTTACCGTGATGCTTCATGTCTTTTTGTTGAGATGCTTCTGAACAAAGATAAAGCATCGAGCTCACTGCACACAGAATATACAAAGAGTGACTATTGCCTGTGCCTAGCGATCCATGCTCCACGGAAAGGCATCATTGAGATCTGGCAAATGCGTACCGGGGCACGTCTTCTGACCATCCCGTGCCCCAAGGGAAGCAGGATCTTACAGCCATCGACGAGGTTCATGTCATCGCCCTTCTCATCGTTGTATTCACCATTGGAGGTTTACCTGTTCAACGGTGACTCTGGGCAGTTGTCTGTATTGAATAGGCACATTGGTTAAATATATCTTCTCTTGTGCTGTTTTCTTTTTTTCTTTTACCGCCCAGGGTTGTACAGTACTATTTTAATTCCTGAATGGCTAGGTGTTTATGATTTGGCCTTTCAAGGAGATAAATAAATAAAGCTAGTTTTGTGTGATTTTGCCAATATATGAAAAGCTAAAGAATT]

[+] EMBL AK121947             [ACACAAGAGCGAAAATTCCATTACTCGATAACCAGAGGGCGGATCTGCAAAAAGCCTCCTCCTCTCCACCCCTCGTCGGCGGCATCTCGTCGCCCCCGCCTCGAAGCTTCCAGAAGCTTCTCCTCCTCTCTCCTCCCCTCCCCATGGCGCGGCGGGGCCACCACCACCACCTGGCGGAGGTGGCCCTCCTCGCGTCGGCCTCCGAGGACCTCGCCGCCGTGGGCGCCGGCGAGAGGGAGGGGTGGCTCGACGACCCCGCCGTGCTCCCCTCCCTCGCGCCGCGCGCGCGCGCCCTCGCCGTCGCCAGCGCGGCGAGGTCCGTGCTCGCGGTTGTCCCGGTCGCCGGAGTAGGCGGTGGGGTCACGGTGAGGCCCGCGCTGGGGCCCGACGACGGCCGGATCTCCGCGGTGGAGTGGGTCCCGCTCGTCGGGGAGGACGCCGAGGAGGCTGGTGGGGAGGGAGTGGCCGTCGCCGTGGGCACCGACGCCGGGTGGCTTCTGTTCTACTCTCTCGCAGGCGATCTACTGCACAAGCGGAGTATTTATCCTTCAAAGATACTGAAACTTAACTTCCGTGAGAGGAAGGAAAACGCCTGGGAAGATTCGGGTTCAGATGAGCTTTCTGTGGTTTTCCCTGGTGTTATTGCACGTTTTGATGGTGCTGACCTTCAGAACATGCTTCAAAAATCATTACATGAAGTTAAATCACACCTGTGGAAAGACAAATCTGAACAGGAAGATGCTGAGGAAGATAGTTCCTTTGGAAGAATACCTTTTCAAATTTGGAATGTAAGCAAATTCAGTTCTTGTGCAGATGCTGCAATTGTTGGGCTGATGCCACCTCCCTTGCTGGAACTTCAGTCGAGTCAGCGCCATTATTGTGCAATTACAGTTGGAGAGGATGCTGTAGTTTCTGCATATAGGTTATCAGAAGACAGAAGCAGGTCAATTGTTGGAGCAATTTTATCAAGAGGTGTTGCTGCAACATTTTCAACAATATCATCTCTGTCTAAAATTATATGGCGGAGCGAACCATC ACCAACC AAG AAATCA CGTCCTAAGCC TCAGTCCTTTGC AAAAACATCACCACTAACTTGCTTG AAAGATTC ACCGAGGAAGGGTGAACGGCTTACACTAT CTCC AAGTGGTACATTGGCTG CCATAACTGATTCTCTTGGCCGCATTCTACTATTGGATACTCATGCCCTTGTGGCTGTACGGCTGTGGAAGGGTTACCGTGATGCTTCATGTCTTTTTGTTGAGATGCTTCTGAACAAAGATAAAGCATCGAGCTCACTGCACACAGAATATACAAAGAGTGACTATTGCCTGTGCCTAGCGATCCATGCTCCACGGAAAGACATCATTGAGATCTGGCAAATGCGTACCGGGGCACGTCTTCTGACCATCCCGTGCCCCAAGGGAAGCAGGATCTTACAGCCATCGACGAGGTTCATGTCATCGCCCTTCTCATCGTTGTATTCACCATTGGAGGTTTACCTGTTCAACGGTGACTCTGGGCAGTTGTCTGTATTGAATAGGCACATTGGTTAAATATATCTTCTCTTGTGCTGTTTTCTTTTTTTCTTTTACCGCCCAGGGTTGTACAGTACTATTTTAATTCCTGAATGGCTAGGTGTTTATGATTTGGCCTTTCAAGGAGATAAATAAATAAAGCTAGTTTTGTG                                 ]
[+] EMBL C28408               [            AAATTCCATTACTCGATAACCAGAGGGCGGATCTGCAAAAANCCTCCTCCTCTCCACCCCTCGTCGGCGGCATCTCGTCGCCCCCGNCTCGAAGCTTCCAGAAGCTTCTCCTCCTCTCTCCTCCCCTCCCCATGGCGCGGCGGGGCCACCACCACCACCTGGCGGAGGTGGCCCTCCTCGCGTCGGCCTCCGAGGACNTCNNCGNCGT ANAGNCGNCGAGAGGGAGGGGTGGCTCGACGACCCCGNCGTACTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK106551             [                                                         CCTCCTCTCCACCCCTCGTCGGCGGCATCTCGTCGCCCCCGCCTCGAAGCTTCCAGAAGCTTCTCCTCCTCTCTCCTCCCCTCCCCATGGCGCGGCGGGGCCACCACCACCACCTGGCGGAGGTGGCCCTCCTCGCGTCGGCCTCCGAGGACCTCGCCGCCGTGGGCGCCGGCGAGAGGGAGGGGTGGCTCGACGACCCCGCCGTGCTCCCCTCCCTCGCGCCGCGCGCGCGCGCCCTCGCCGTCGCCAGCGCGGCGAGGTCCGTGCTCGCGGTTGTCCCGGTCGCCGGAGTAGGCGGTGGGGTCACGGTGAGGCCCGCGCTGGGGCCCGACGACGGCCGGATCTCCGCGGTGGAGTGGGTCCCGCTCGTCGGGGAGGACGCCGAGGAGGCTGGTGGGGAGGGAGTGGCCGTCGCCGTGGGCACCGACGCCGGGTGGCTTCTGTTCTACTCTCTCGCAGGCGATCTACTGCACAAGCAGAGTATTTATCCTTCAAAGATACTGAAACTTAACTTCCGTGAGAGGAAGGAAAACGCCTGGGAAGATTCGGGTTCAGATGAGCTTTCTGTGGTTTTCCCTGGTGTTATTGCACGTTTTGATGGTGCTGACCTTCAGAACATGCTTCAAAAATCATTACATGAAGTTAAATCACACCTGTGGAAAGACAAATCTGAACAGGAAGATGCTGAGGAAGATAGTTCCTTTGGAAGAATACCTTTTCAAATTTGGAATGTAAGCAAATTCAGTTCTTGTGCAGATGCTGCAATTGTTGGGCTGATGCCACCTCCCTTGCTGGAACTTCAGTCGAGTCAGCGCCATTATTGTGCAATTACAGTTGGAGAGGATGCTGTAGTTTCTGCATATAGGTTATCAGAAGACAGAAGCAGGTCAATTGTTGGAGCAATTTTATCAAGAGGTGTTGCTGCAACATTTTCAACAATATCATCTCTGTCTAAAATTATATGGCGGAGCGAACCATC ACCAACC AAG AAATCA CGTCCTAAGCC TCAGTCCTTTGC AAAAACATCACCACTAACTTGCTTG AAAGATTC ACCGAGGAAGGGTGAACGGCTTACACTAT CTCC AAGTGGTACATTGGCTG CCATAACTGATTCTCTTGGCCGCATTCTACTATTGGATACTCATGCCCTTGTGGCTGTACGGCTGTGGAAGGGTTACCGTGATGCTTCATGTCTTTTTGTTGAGATGCTTCTGAACAAAGATAAAGCATCGAGCTCACTGCACACAGAATATACAAAGAGTGACTATTGCCTGTGCCTAGCGATCCATGCTCCACGGAAAGGCATCATTGAGATCTGGCAAATGCGTACCGGGGCACGTCTTCTGACCATCCCGTGCCCCAAGGGAAGCAGGATCTTACAGCCATCGACGAGGTTCATGTCATCGCCCTTCTCATCGTTGTATTCACCATTGGAGGTTTACCTGTTCAACGGTGACTCTGGGCAGTTGT TGTATTGAATAGGCACATTGGTTAAATATATCTTCTCTTGTGCTGTTTTCTTTTTTTCTTTTACCGCCCAGGGTTGTACAGTACTATTTTAATTCCTGAATGGCTAGGTGTTTATGATTTGGCCTTTCAAGGAGATAAATAAATAAAGCTAGTTTTGTGTGATTTTGCCAATATATGAAAAGCTAAAGAAT ]
[-] EMBL CB672277             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGCAGGTCAATTGTTGGAGCAATTTTATCAAGAGGTGTTGCTGCAACATTTTCAACAATATCATCTCTGTCTAAAATTATATGGCGGAGCGAACCATC ACCAACC AAG AAATCA CGTCCTAAGCC TCAGTCCTTTGC AAAAACATCACCACTAACTTGCTTG AAAGATTC ACCGAGGAAGGGTGAACGGCTTACACTAT CTCC AAGTGGTACATTGGCTG CCATAACTGATTCTCTTGGCCGCATTCTACTATTGGATACTCATGCCCTTGTGGCTGTACGGCTGTGGAAGGGTTACCGTGATGCTTCATGTCTTTTTGTTGAGATGCTTCTGAACAAAGATAAAGCATCGAGCTCACTGCACACAGAATATACAAAGAGTGACTATTGCCTGTGCCTAGCGATCCATGCTCCACGGAAAGGCATCATTGAGATCTGGCAAATGCGTACCGGGGCACGTCTTTTGACCATCCCGTGCCCCAAGGGAAGCAGGATCTTACAGCCATCGACGAGGTTCATGTCATCGCCCTTCTCATCGTTGTATTCACCATTGGAGGTTTACCTGTTCAACGGTGACTCTGGGCAGTTGTCTGTATTGAATAGGCACATTGGTTAAATATATCTTCTCTTGTGCTGTTTTCTTTTTTTCTTTTCCCGCCCAGGGTTGTACAGTACTATTTTAATTCCTGAATGGCTAGGTGTTTATGATTTGCCCTTTCAAGGAGATAAATAAATAAAGCTAGTTTTGTGTGATTTTTCCAAGATATGAAAAGCTAAAGAATT]
[+] EMBL AU085828             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    aacCCATCAACCAACCAAAGAAAATCACCGTCCNAAGCCTTCAGTCCTTTGCAAAAAACATCACCACTAACTTGCTTGAAAAGATTCNCCCGAGGAAGGTTGAACGGCTTACACTATCCTCCAAAGTGGTACATTGNCTGCCCATAACTGATTCTCTTGGCCGCATTCTACTATTGGATACTCATGCCCTTGTGGCTGTACGGCTGTGGAAGGGTTACCGTGATGCTTCATGTCTTTTTGTTGAGATGCTTCTGAACAAAGATAAAGCATCGAGCTCACTGCACACAGAATATACAAAGAGTGACTATTGCCTGTGCCTAGCGATCCATGCTCCACGGAAAGGCATCATTGAGATCTGGCAAATGCGTACCGGGGCACGTCTTCTGACCATCCCGTGCCCCAAGGGAAGCAGGATCTTACAGCCATCGACGAGGTTCATGTCATCGCCCTTCTCATCGTTGTATTCACCATTGGAGGTTTACCTGTTCAACGGTGACTCTGGGCAGTTGTCTGTATTGAATAGGCACATTGGTTAAATATATCTTCTCTTGTGCTGTTTTCTTTTTTTCTTTTACCGCCCAGGGTTGTACAGTACTATTTTAATTCCTGAATGGCTAGGTGTTTATGATTTGGCCTTTCAAGGAGATAAATAAATAAAGCTAGTTTTGTGTGATTTTGCCAAaaaaaaa              ]
[+] EMBL CB000262             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TACTCATGCCCTTGTGGCTGTACGGCTGTGGCAGGGTTACCGTGATGCTTCATGTCTTTTTGTTGAGATGCTTCTGAACAAAGATAAAGCATCGAGCTCACTGCACACAGAATATACAAAGAGTGACTATTGCCTGTGCCTAGCGATCCATGCTCCACGGAAAGGCATCATTGAGATCTGGCAAATGCGTACCGGGGCACGTCTTCTGACCATCCCGTGCCCCAAGGGAAGCAGGATCTTACAGCCATCGACGAGGTTCATGTCATCGCCCTTCTCATCGTTGTATTCACCATTGGAGGTTTACCTGTTCAACGGTGACTCTGGGCAGTTGTCTGTATTGAATAGGCACATTGGTTAAATATATCTTCTCTTGTGCTGTTTTCTTTTTTTCTTTTACCGCCCAGGGTTGTACAGTACTATTTTAATTCCTGAATGGCTAGGTGTTTATGATTTGGCCTTTCAAGGAGATAAATAAATAAAGCTAGTTTTGTGTGATTTTGCCAATAAAAAAAAA           ]




>consensus_12118#0
ACACAAGAGCGAAAATTCCATTACTCGATAACCAGAGGGCGGATCTGCAAAAAGCCTCCT
CCTCTCCACCCCTCGTCGGCGGCATCTCGTCGCCCCCGCCTCGAAGCTTCCAGAAGCTTC
TCCTCCTCTCTCCTCCCCTCCCCATGGCGCGGCGGGGCCACCACCACCACCTGGCGGAGG
TGGCCCTCCTCGCGTCGGCCTCCGAGGACCTCGCCGCCGTGGGCGCCGGCGAGAGGGAGG
GGTGGCTCGACGACCCCGCCGTGCTCCCCTCCCTCGCGCCGCGCGCGCGCGCCCTCGCCG
TCGCCAGCGCGGCGAGGTCCGTGCTCGCGGTTGTCCCGGTCGCCGGAGTAGGCGGTGGGG
TCACGGTGAGGCCCGCGCTGGGGCCCGACGACGGCCGGATCTCCGCGGTGGAGTGGGTCC
CGCTCGTCGGGGAGGACGCCGAGGAGGCTGGTGGGGAGGGAGTGGCCGTCGCCGTGGGCA
CCGACGCCGGGTGGCTTCTGTTCTACTCTCTCGCAGGCGATCTACTGCACAAGCGGAGTA
TTTATCCTTCAAAGATACTGAAACTTAACTTCCGTGAGAGGAAGGAAAACGCCTGGGAAG
ATTCGGGTTCAGATGAGCTTTCTGTGGTTTTCCCTGGTGTTATTGCACGTTTTGATGGTG
CTGACCTTCAGAACATGCTTCAAAAATCATTACATGAAGTTAAATCACACCTGTGGAAAG
ACAAATCTGAACAGGAAGATGCTGAGGAAGATAGTTCCTTTGGAAGAATACCTTTTCAAA
TTTGGAATGTAAGCAAATTCAGTTCTTGTGCAGATGCTGCAATTGTTGGGCTGATGCCAC
CTCCCTTGCTGGAACTTCAGTCGAGTCAGCGCCATTATTGTGCAATTACAGTTGGAGAGG
ATGCTGTAGTTTCTGCATATAGGTTATCAGAAGACAGAAGCAGGTCAATTGTTGGAGCAA
TTTTATCAAGAGGTGTTGCTGCAACATTTTCAACAATATCATCTCTGTCTAAAATTATAT
GGCGGAGCGAACCATCACCAACCAAGAAATCACGTCCTAAGCCTCAGTCCTTTGCAAAAA
CATCACCACTAACTTGCTTGAAAGATTCACCGAGGAAGGGTGAACGGCTTACACTATCTC
CAAGTGGTACATTGGCTGCCATAACTGATTCTCTTGGCCGCATTCTACTATTGGATACTC
ATGCCCTTGTGGCTGTACGGCTGTGGAAGGGTTACCGTGATGCTTCATGTCTTTTTGTTG
AGATGCTTCTGAACAAAGATAAAGCATCGAGCTCACTGCACACAGAATATACAAAGAGTG
ACTATTGCCTGTGCCTAGCGATCCATGCTCCACGGAAAGGCATCATTGAGATCTGGCAAA
TGCGTACCGGGGCACGTCTTCTGACCATCCCGTGCCCCAAGGGAAGCAGGATCTTACAGC
CATCGACGAGGTTCATGTCATCGCCCTTCTCATCGTTGTATTCACCATTGGAGGTTTACC
TGTTCAACGGTGACTCTGGGCAGTTGTCTGTATTGAATAGGCACATTGGTTAAATATATC
TTCTCTTGTGCTGTTTTCTTTTTTTCTTTTACCGCCCAGGGTTGTACAGTACTATTTTAA
TTCCTGAATGGCTAGGTGTTTATGATTTGGCCTTTCAAGGAGATAAATAAATAAAGCTAG
TTTTGTGTGATTTTGCCAATATATGAAAAGCTAAAGAATT

consensusID : consensus_12118#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 738
fasta sequence

                              [CTCGCGTCGGCCTCCGAGGACCTCGCCGCCGTGGGCGCCGGCGAGAGGGAGGGGTGGCTCGACGACCCCGCCGTGCTCCCCTCCCTCGCGCCGCGCGCGCGCGCCCTCGCCGTCGCCAGCGCGGCGAGGTCCGTGCTCGCGGTTGTCCCGGTCGCCGGAGTAGGCGGTGGGGTCACGGTGAGGCCCGCGCTGGGGCCCGACGACGGCCGGATCTCCGCGGTGGAGTGGGTCCCGCTCGTCGGGGAGGACGCCGAGGAGGCTGGTGGGGAGGGAGTGGCCGTCGCCGTGGGCACCGACGCCGGGTGGCTTCTGTTCTACTCTCTCGCAGGCGATCTACTGCACAAGCAGAGTATTTATCCTTCAAAGATACTGAAACTTAACTTCCGTGAGAGGAAGGAAAACGCCTGGGAAGATTCGGGTTCAGATGAGCTTTCTGTGGTTTTCCCTGGTGTTATTGCACGTTTTGATGGTGCTGACCTTCAGAACATGCTTCAAAAATCATTACATGAAGTTAAATCACACCTGTGGAAAGACAAATCTGAACAGGAAGATGCTGAGGAAGATAGTTCCTTTGGAAGAATACCTTTTCAAATTTGGAATGTAAGCAAATTCAGTTCTTGTGCAGATGCTGCAATTGTTGGGCTGATGCCACCTCCCTTGCTGGAACTTCAGCTGCTTTTATATTGCTGGGCAGTCGAGTCAGCGCCATTATTGTGCAATTACAGTTGGAGAGGATGC]

[+] EMBL CB672276             [CTCGCGTCGGCCTCCGAGGACCTCGCCGCCGTGGGCGCCGGCGAGAGGGAGGGGTGGCTCGACGACCCCGCCGTGCTCCCCTCCCTCGCGCCGCGCGCGCGCGCCCTCGCCGTCGCCAGCGCGGCGAGGTCCGTGCTCGCGGTTGTCCCGGTCGCCGGAGTAGGCGGTGGGGTCACGGTGAGGCCCGCGCTGGGGCCCGACGACGGCCGGATCTCCGCGGTGGAGTGGGTCCCGCTCGTCGGGGAGGACGCCGAGGAGGCTGGTGGGGAGGGAGTGGCCGTCGCCGTGGGCACCGACGCCGGGTGGCTTCTGTTCTACTCTCTCGCAGGCGATCTACTGCACAAGCAGAGTATTTATCCTTCAAAGATACTGAAACTTAACTTCCGTGAGAGGAAGGAAAACGCCTGGGAAGATTCGGGTTCAGATGAGCTTTCTGTGGTTTTCCCTGGTGTTATTGCACGTTTTGATGGTGCTGACCTTCAGAACATGCTTCAAAAATCATTACATGAAGTTAAATCACACCTGTGGAAAGACAAATCTGAACAGGAAGATGCTGAGGAAGATAGTTCCTTTGGAAGAATACCTTTTCAAATTTGGAATGTAAGCAAATTCAGTTCTTGTGCAGATGCTGCAATTGTTGGGCTGATGCCACCTCCCTTGCTGGAACTTCAGCTGCTTTTATATTGCTGGGCAGTCGAGTCAGCGCCATTATTGTGCAATTACAGTTGGAGA      ]
[+] EMBL CF305070             [                                                                                                                                                                                                                                                                                                                   TTCTGTTCTACTCTCTCGCAGGCGATCTACTGCACAAGCAGAGTATTTATCCTTCAAAGATACTGAAACTTAACTTCCGTGAGAGGAAGGAAAACGCCTGGGAAGATTCGGGTTCAGATGAGCTTTCTGTGGTTTTCCCTGGTGTTATTGCACGTTTTGATGGTGCTGACCTTCAGAACATGCTTCAAAAATCATTACATGAAGTTAAATCACACCTGTGGAAAGACAAATCTGAACAGGAAGATGCTGAGGAAGATAGTTCCTTTGGAAGAATACCTTTTCAAATTTGGAATGTAAGCAAATTCAGTTCTTGTGCAGATGCTGCAATTGTTGGGCTGATGCCACCTCCCTTGCTGGAACTTCAGCTGCTTTTATATTGCTGGGCAGTCGAGTCAGCGCCATTATTGTGCAATTACAGTTGGAGAGGATGC]




>consensus_12118#1
CTCGCGTCGGCCTCCGAGGACCTCGCCGCCGTGGGCGCCGGCGAGAGGGAGGGGTGGCTC
GACGACCCCGCCGTGCTCCCCTCCCTCGCGCCGCGCGCGCGCGCCCTCGCCGTCGCCAGC
GCGGCGAGGTCCGTGCTCGCGGTTGTCCCGGTCGCCGGAGTAGGCGGTGGGGTCACGGTG
AGGCCCGCGCTGGGGCCCGACGACGGCCGGATCTCCGCGGTGGAGTGGGTCCCGCTCGTC
GGGGAGGACGCCGAGGAGGCTGGTGGGGAGGGAGTGGCCGTCGCCGTGGGCACCGACGCC
GGGTGGCTTCTGTTCTACTCTCTCGCAGGCGATCTACTGCACAAGCAGAGTATTTATCCT
TCAAAGATACTGAAACTTAACTTCCGTGAGAGGAAGGAAAACGCCTGGGAAGATTCGGGT
TCAGATGAGCTTTCTGTGGTTTTCCCTGGTGTTATTGCACGTTTTGATGGTGCTGACCTT
CAGAACATGCTTCAAAAATCATTACATGAAGTTAAATCACACCTGTGGAAAGACAAATCT
GAACAGGAAGATGCTGAGGAAGATAGTTCCTTTGGAAGAATACCTTTTCAAATTTGGAAT
GTAAGCAAATTCAGTTCTTGTGCAGATGCTGCAATTGTTGGGCTGATGCCACCTCCCTTG
CTGGAACTTCAGCTGCTTTTATATTGCTGGGCAGTCGAGTCAGCGCCATTATTGTGCAAT
TACAGTTGGAGAGGATGC

consensusID : consensus_12118#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence

                              [AATTCGGCACGAGCGCGGCGGGGCCACCACCACCACCTGGCGGAGGTGGCCCTCCTCGCGTCGGCCTCCGAGGTCCGTGCTCGCGGTTGTCCCGGTCGCCGGAGTAGGCGGTGGGGTCACGGTGAGGCCCGCGCTGGGGCCCGACGACGGCCGGATCTCCGCGGTGGAGTGGGTCCCGCTCGTCGGGGAGGACGCCGAGGAGGCTGGTGGGGAGGGAGTGGCCGTCGCCGTGGGCACCGACGCCGGGTGGCTTCTGTTCTACTCTCTCGCAGGCGATCTACTGCACAAGCAGAGTATTTATCCTTCAAAGATACTGAAACTTAACTTCCGTGAGAGGAAGGAAAACGCCTGGGAAGATTCGGGTTCAGATGAGCTTTCTGTGGTTTTCCCTGGTGTTATTGCACGTTTTGATGGTGCTGACCTTCAGAACATGCTTCAAAAATCATTACATGAAGTTAAATCACACCTGTGGGAAGACAAATCTGAACAGGAAGATGCTGAGGAAGATAGTTCCTTTGGAAGAATACTTTTTCAAATTTGGAAATGTAGCAAATTCAGTTCTTGTGCAGATGCTGCAATTGTTGGGCTGATGCCACCTCCC]

[+] EMBL CA755431             [AATTCGGCACGAGCGCGGCGGGGCCACCACCACCACCTGGCGGAGGTGGCCCTCCTCGCGTCGGCCTCCGAGGTCCGTGCTCGCGGTTGTCCCGGTCGCCGGAGTAGGCGGTGGGGTCACGGTGAGGCCCGCGCTGGGGCCCGACGACGGCCGGATCTCCGCGGTGGAGTGGGTCCCGCTCGTCGGGGAGGACGCCGAGGAGGCTGGTGGGGAGGGAGTGGCCGTCGCCGTGGGCACCGACGCCGGGTGGCTTCTGTTCTACTCTCTCGCAGGCGATCTACTGCACAAGCAGAGTATTTATCCTTCAAAGATACTGAAACTTAACTTCCGTGAGAGGAAGGAAAACGCCTGGGAAGATTCGGGTTCAGATGAGCTTTCTGTGGTTTTCCCTGGTGTTATTGCACGTTTTGATGGTGCTGACCTTCAGAACATGCTTCAAAAATCATTACATGAAGTTAAATCACACCTGTGGGAAGACAAATCTGAACAGGAAGATGCTGAGGAAGATAGTTCCTTTGGAAGAATACTTTTTCAAATTTGGAAATGTAGCAAATTCAGTTCTTGTGCAGATGCTGCAATTGTTGGGCTGATGCCACCTCCC]




>consensus_12118#2
AATTCGGCACGAGCGCGGCGGGGCCACCACCACCACCTGGCGGAGGTGGCCCTCCTCGCG
TCGGCCTCCGAGGTCCGTGCTCGCGGTTGTCCCGGTCGCCGGAGTAGGCGGTGGGGTCAC
GGTGAGGCCCGCGCTGGGGCCCGACGACGGCCGGATCTCCGCGGTGGAGTGGGTCCCGCT
CGTCGGGGAGGACGCCGAGGAGGCTGGTGGGGAGGGAGTGGCCGTCGCCGTGGGCACCGA
CGCCGGGTGGCTTCTGTTCTACTCTCTCGCAGGCGATCTACTGCACAAGCAGAGTATTTA
TCCTTCAAAGATACTGAAACTTAACTTCCGTGAGAGGAAGGAAAACGCCTGGGAAGATTC
GGGTTCAGATGAGCTTTCTGTGGTTTTCCCTGGTGTTATTGCACGTTTTGATGGTGCTGA
CCTTCAGAACATGCTTCAAAAATCATTACATGAAGTTAAATCACACCTGTGGGAAGACAA
ATCTGAACAGGAAGATGCTGAGGAAGATAGTTCCTTTGGAAGAATACTTTTTCAAATTTG
GAAATGTAGCAAATTCAGTTCTTGTGCAGATGCTGCAATTGTTGGGCTGATGCCACCTCC
C

consensusID : consensus_12118#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [TCACGCCGCCGGCGCCGGCGCCTCCCCAACCCTAGCCGCCGCCCCAGTCCCCTCCTCCCTCTCGTCCCACCCGTGCTCTCCCTCTCCCTCTCACGCCGCCGCCGCCGCCTCGAAGCTTCCCCTCCCCATGGCGCCGCGAGGCTACCTGGCGGAGGTGGCTCTCCTCACGTCGGCCTCCGAGGACCTCGCCGCCGTGGGCCCCGGCGAGAGGGAGGGGTGGCTGGACGACCCCGCCGTGCTCCCTCCCCTCGCGCCGCGCGCGCGCGCCCTCGCCGTGGCCGTTGCGGCGCGGGCC]

[+] EMBL CB641299             [TCACGCCGCCGGCGCCGGCGCCTCCCCAACCCTAGCCGCCGCCCCAGTCCCCTCCTCCCTCTCGTCCCACCCGTGCTCTCCCTCTCCCTCTCACGCCGCCGCCGCCGCCTCGAAGCTTCCCCTCCCCATGGCGCCGCGAGGCTACCTGGCGGAGGTGGCTCTCCTCACGTCGGCCTCCGAGGACCTCGCCGCCGTGGGCCCCGGCGAGAGGGAGGGGTGGCTGGACGACCCCGCCGTGCTCCCTCCCCTCGCGCCGCGCGCGCGCGCCCTCGCCGTGGCCGTTGCGGCGCGGGCC]




>consensus_12118#3
TCACGCCGCCGGCGCCGGCGCCTCCCCAACCCTAGCCGCCGCCCCAGTCCCCTCCTCCCT
CTCGTCCCACCCGTGCTCTCCCTCTCCCTCTCACGCCGCCGCCGCCGCCTCGAAGCTTCC
CCTCCCCATGGCGCCGCGAGGCTACCTGGCGGAGGTGGCTCTCCTCACGTCGGCCTCCGA
GGACCTCGCCGCCGTGGGCCCCGGCGAGAGGGAGGGGTGGCTGGACGACCCCGCCGTGCT
CCCTCCCCTCGCGCCGCGCGCGCGCGCCCTCGCCGTGGCCGTTGCGGCGCGGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12118#1      ------------------------------------------------------------
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      ACACAAGAGCGAAAATTCCATTACTCGATAACCAGAGGGCGGATCTGCAAAAAGCCTCCT 60
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      ------------------------------------------------------------
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      CCTCTCCACCCCTCGTCGGCGGCATCTCGTCGCCCCCGCCTCGAAGCTTCCAGAAGCTTC 120
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      ------------------------------------------------------------
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      TCCTCCTCTCTCCTCCCCTCCCCATGGCGCGGCGGGGCCACCACCACCACCTGGCGGAGG 180
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      --------CTCGCGTCGGCCTCCGAGGACCTCGCCGCCGTGGGCGCCGGCGAGAGGGAGG 52
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      TGGCCCTCCTCGCGTCGGCCTCCGAGGACCTCGCCGCCGTGGGCGCCGGCGAGAGGGAGG 240
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      GGTGGCTCG--ACGACCCCGCCGTGCTCCCCTCCCTCGCGCCGCGCGCGCGCGCCCTCGC 110
consensus_12118#2      ---AATTCGGCACGAGCGCGGCGGGGCCACCACCACCACCTGGCGGAGGTG-GCCCTCCT 56
consensus_12118#0      GGTGGCTCG--ACGACCCCGCCGTGCTCCCCTCCCTCGCGCCGCGCGCGCGCGCCCTCGC 298
consensus_12118#3      ----TCACGCCGCCGGCGCCGGCGCCTCCCCAACCCTAGCCGCCGCCCCAGTCCCCTCCT 56
                              **   *   * *        * **  *         **     *  *****  

consensus_12118#1      CGTCGCCAGCGCGGCGAGGTCCGTGCTCGCGGTT----GTCCCGGTCGCCGGAGTAGGCG 166
consensus_12118#2      CG-CGTCGGC-CTCCGAGGTCCGTGCTCGCGGTT----GTCCCGGTCGCCGGAGTAGGCG 110
consensus_12118#0      CGTCGCCAGCGCGGCGAGGTCCGTGCTCGCGGTT----GTCCCGGTCGCCGGAGTAGGCG 354
consensus_12118#3      CCCTCTCGTCCCACCCGTGCTCTCCCTCTCCCTCTCACGCCGCCGCCGCCGCCTCGAAGC 116
                       *     *  * *  *   *  *   *** *  *     * * * * *****         

consensus_12118#1      GTGGGGTCACGGTGAGGCCCGCGCTGGGGCCCGACGACGGCCGGA-TCTCCGCGGTGGAG 225
consensus_12118#2      GTGGGGTCACGGTGAGGCCCGCGCTGGGGCCCGACGACGGCCGGA-TCTCCGCGGTGGAG 169
consensus_12118#0      GTGGGGTCACGGTGAGGCCCGCGCTGGGGCCCGACGACGGCCGGA-TCTCCGCGGTGGAG 413
consensus_12118#3      TTCCCCTCCCCATGGCGCC-GCGAGGCTACCTGGCGGAGGTGGCTCTCCTCACGTCGGCC 175
                        *    ** *  **  *** ***  *   ** * **  **  *   **  * **  **  

consensus_12118#1      TGGGTCCCGCTCGTCGGGGAGGACGCCGAGGAGGCTGGTGGGGAGGGAGTGGCCGTCGCC 285
consensus_12118#2      TGGGTCCCGCTCGTCGGGGAGGACGCCGAGGAGGCTGGTGGGGAGGGAGTGGCCGTCGCC 229
consensus_12118#0      TGGGTCCCGCTCGTCGGGGAGGACGCCGAGGAGGCTGGTGGGGAGGGAGTGGCCGTCGCC 473
consensus_12118#3      TCCGAGGACCTCGCCGCCGTGGGCCCCGGCGAGAGGGAGGGGTGGCTGGACGACCCCGCC 235
                       *  *     **** **  * ** * ***  ***   *  ***  *   *  * *  ****

consensus_12118#1      GTGGGCACCGACGCCGGGTGGCTTCTGTTCTACTCTCTCGCAGGCGATCTACTGCACAAG 345
consensus_12118#2      GTGGGCACCGACGCCGGGTGGCTTCTGTTCTACTCTCTCGCAGGCGATCTACTGCACAAG 289
consensus_12118#0      GTGGGCACCGACGCCGGGTGGCTTCTGTTCTACTCTCTCGCAGGCGATCTACTGCACAAG 533
consensus_12118#3      GTGCTCCCTCCCCTCGCGCCGCGCGCGCGCGCCCTCGCCGTGGCCG--TTGCGGCGCGGG 293
                       ***  * *   *  ** *  **    *  *  *     **  * **   * * ** *  *

consensus_12118#1      CAGAGTATTTATCCTTCAAAGATACTGAAACTTAACTTCCGTGAGAGGAAGGAAAACGCC 405
consensus_12118#2      CAGAGTATTTATCCTTCAAAGATACTGAAACTTAACTTCCGTGAGAGGAAGGAAAACGCC 349
consensus_12118#0      CGGAGTATTTATCCTTCAAAGATACTGAAACTTAACTTCCGTGAGAGGAAGGAAAACGCC 593
consensus_12118#3      CC---------------------------------------------------------- 295
                       *                                                           

consensus_12118#1      TGGGAAGATTCGGGTTCAGATGAGCTTTCTGTGGTTTTCCCTGGTGTTATTGCACGTTTT 465
consensus_12118#2      TGGGAAGATTCGGGTTCAGATGAGCTTTCTGTGGTTTTCCCTGGTGTTATTGCACGTTTT 409
consensus_12118#0      TGGGAAGATTCGGGTTCAGATGAGCTTTCTGTGGTTTTCCCTGGTGTTATTGCACGTTTT 653
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      GATGGTGCTGACCTTCAGAACATGCTTCAAAAATCATTACATGAAGTTAAATCACACCTG 525
consensus_12118#2      GATGGTGCTGACCTTCAGAACATGCTTCAAAAATCATTACATGAAGTTAAATCACACCTG 469
consensus_12118#0      GATGGTGCTGACCTTCAGAACATGCTTCAAAAATCATTACATGAAGTTAAATCACACCTG 713
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      TGGAAAGACAAATCTGAACAGGAAGATGCTGAGGAAGATAGTTCCTTTGGAAGAATACCT 585
consensus_12118#2      TGGGAAGACAAATCTGAACAGGAAGATGCTGAGGAAGATAGTTCCTTTGGAAGAATACTT 529
consensus_12118#0      TGGAAAGACAAATCTGAACAGGAAGATGCTGAGGAAGATAGTTCCTTTGGAAGAATACCT 773
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      TTTCAAATTTGGAATGTAAGCAAATTCAGTTCTTGTGCAGATGCTGCAATTGTTGGGCTG 645
consensus_12118#2      TTTCAAATTTGGAAATGTAGCAAATTCAGTTCTTGTGCAGATGCTGCAATTGTTGGGCTG 589
consensus_12118#0      TTTCAAATTTGGAATGTAAGCAAATTCAGTTCTTGTGCAGATGCTGCAATTGTTGGGCTG 833
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      ATGCCACCTCCCTTGCTGGAACTTCAGCTGCTTTTATATTGCTGGGCAGTCGAGTCAGC- 704
consensus_12118#2      ATGCCACCTCCC------------------------------------------------ 601
consensus_12118#0      ATGCCACCTCCCTTGCTGGAACTTCAGTCGAGTCAGCGCCATTATTGTGCAATTACAGTT 893
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      -GCCATTATTGTGCAATTACAGTTGGAGAGGATGC------------------------- 738
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      GGAGAGGATGCTGTAGTTTCTGCATATAGGTTATCAGAAGACAGAAGCAGGTCAATTGTT 953
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      ------------------------------------------------------------
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      GGAGCAATTTTATCAAGAGGTGTTGCTGCAACATTTTCAACAATATCATCTCTGTCTAAA 1013
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      ------------------------------------------------------------
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      ATTATATGGCGGAGCGAACCATCACCAACCAAGAAATCACGTCCTAAGCCTCAGTCCTTT 1073
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      ------------------------------------------------------------
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      GCAAAAACATCACCACTAACTTGCTTGAAAGATTCACCGAGGAAGGGTGAACGGCTTACA 1133
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      ------------------------------------------------------------
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      CTATCTCCAAGTGGTACATTGGCTGCCATAACTGATTCTCTTGGCCGCATTCTACTATTG 1193
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      ------------------------------------------------------------
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      GATACTCATGCCCTTGTGGCTGTACGGCTGTGGAAGGGTTACCGTGATGCTTCATGTCTT 1253
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      ------------------------------------------------------------
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      TTTGTTGAGATGCTTCTGAACAAAGATAAAGCATCGAGCTCACTGCACACAGAATATACA 1313
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      ------------------------------------------------------------
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      AAGAGTGACTATTGCCTGTGCCTAGCGATCCATGCTCCACGGAAAGGCATCATTGAGATC 1373
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      ------------------------------------------------------------
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      TGGCAAATGCGTACCGGGGCACGTCTTCTGACCATCCCGTGCCCCAAGGGAAGCAGGATC 1433
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      ------------------------------------------------------------
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      TTACAGCCATCGACGAGGTTCATGTCATCGCCCTTCTCATCGTTGTATTCACCATTGGAG 1493
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      ------------------------------------------------------------
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      GTTTACCTGTTCAACGGTGACTCTGGGCAGTTGTCTGTATTGAATAGGCACATTGGTTAA 1553
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      ------------------------------------------------------------
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      ATATATCTTCTCTTGTGCTGTTTTCTTTTTTTCTTTTACCGCCCAGGGTTGTACAGTACT 1613
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      ------------------------------------------------------------
consensus_12118#2      ------------------------------------------------------------
consensus_12118#0      ATTTTAATTCCTGAATGGCTAGGTGTTTATGATTTGGCCTTTCAAGGAGATAAATAAATA 1673
consensus_12118#3      ------------------------------------------------------------
                                                                                   

consensus_12118#1      -----------------------------------------------
consensus_12118#2      -----------------------------------------------
consensus_12118#0      AAGCTAGTTTTGTGTGATTTTGCCAATATATGAAAAGCTAAAGAATT 1720
consensus_12118#3      -----------------------------------------------