These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12126#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1818 fasta sequence [CATGCGTGCGAGTCG-CGG-GTTCTGAAACCTGGGATGCGCAAGGAAGCTGACGAGCGNGAGGCCCTCACGNGCANCCCTGNGCCG-ACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGC-AA--CAG-A-GGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCT-GGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACG-CTTC-G-ACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGC-TGCTCCGGTGAGCC-CGANCGGGAA-TCGGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCTGGTTACGGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCACCATAGCAATGTTGGGCGGCGACGGGAGAACGAAGACGGTGTGCGTGACCGGCGCCGGGGGCTTCGTGGCGTCGTGGCTCGTCAAGCTCCTCCTCTCCCGCGGCTGCTACACCGTCCATGGCACCGTCCGTGATCCAGGCGACGCCAAGAACGCCCACCTGATGTCTCTGGACGGCGCCGCGGAGAGGCTGCGGCTGTTCAAGGCCGACCTGCTCGACTACGGCAGCGTGGCGGCGGCCATCGCCGGCTGCGACGACGTCTTCCATGTGGCCTGCCCCGTGCTCCTCTCCGCCCCCAACCCAGAGGTTGATATACTTGCTCCTGCTGTAACGGGCACGACGAATGTGCTGAAGGCTTGTTCAGAAGCTAAGGTTGGGAGGGTTGTGGTGGTGTCATCTGTCTCTGCTGCGATGGTGAATCCTAACTGGTCTGAGGGCAAGGCCATAGATGAAGATTGCTGGTCTGATGTCGATTACTGCAGAGCCACTAAGAATTGGTATACCCTTGGGAAAACACTTGCGGAGATTGAGGCCTTTGATTATGCGAAGAGAAGTGGATTGGATCTTGTGACACTCTGCCCATCGTTGGTGATTGGACCTTTGCTGCAACCAACTGTGAATGCGAGCAGTACAGTCATACTTGGATGTCTGAAAGGTGATTGTGAGGTAAAAATCAAACTGAGGAACTTTGTGGATGTCAGGGATGTTGCC-GATGCTCTTCTTTTACTGTATGAAACCCCAGGGGTCTCCGGAC-GATACATCTGCAGTTCAC-ACGCAAGAAGGATGCCTCATATCATTGACTTACTAAAGAGCTGGTATCCCGGTTACAAATTTGCCGACAAGTTTGTGGAAGTGAGCG-ATGAGCCGCAATTCAACTCGGGGAAGCTAGAGAAGCTAGGATGGAAAATCAAGCCATTTGAGGAAACACTCAGGGACAGTGTTGAATCTTATAGAGCTGCAGGTGTCCTGGATTGAGC-AAATGGTGTCCTGTGTATATACC-AACACAATTGAAGGAATTACCAACACATTGATCGGGTTCTAGGCTTAGTTTAATAGATCTACTACATAGGTGTTTGTTTTGATCGACCTTAATTGGATCTGGCCTCTTTGGC-AACATCTGTATGTA-AGAGCTGCCTATTTGGCAGCAGCTGGGAGTAGAAGATAAAATTATCTTTTGGTGATGGATTTGCGCTGAGAATTATGCCATTTATGCCCTGAAAAAAAGAGTGACTTGATGTACCTGTGTGATAAGCTTTATATGAGGC] [+] EMBL AU100852 [CATGCGTGCGAGTCGACGG GTTCTGAAACCTGGGATGCGCAAGGAAGCTGACGAGCGNGAGGCCCTCACGNGCANCCCTGNGCCG ACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGC AA CAG ANGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCT GGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACG CTTC GAACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGC TGCTCCGGTGAGCC CGANCGGGAATTCGGGAGCTCCAAGTGG ] [+] EMBL AU069630 [ TCG CGGNGTTCTGAAACCTGGGATGCGCAAGGAAGCTGACGAGCGNGAGGCCCTCACGNNGAACCTNGNGCCGNACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGC AA CAG AGGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACG CTTC GAACCTAT ] [+] EMBL AK063958 [ TTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAG A GGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCT GGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTC G ACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGC TGCTCCGGTGAGCCGCGCCACGGAA TCGGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCTGGTTACGGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCACCATAGCAATGTTGGGCGGCGACGGGAGAACGAAGACGGTGTGCGTGACCGGCGCCGGGGGCTTCGTGGCGTCGTGGCTCGTCAAGCTCCTCCTCTCCCGCGGCTGCTACACCGTCCATGGCACCGTCCGTGATCCAGGCGACGCCAAGAACGCCCACCTGATGTCTCTGGACGGCGCCGCGGAGAGGCTGCGGCTGTTCAAGGCCGACCTGCTCGACTACGGCAGCGTGGCGGCGGCCATCGCCGGCTGCGACGACGTCTTCCATGTGGCCTGCCCCGTGCTCCTCTCCGCCCCCAACCCAGAGGTTGATATACTTGCTCCTGCTGTAACGGGCACGACGAATGTGCTGAAGGCTTGTTCAGAAGCTAAGGTTGGGAGGGTTGTGGTGGTGTCATCTGTCTCTGCTGCGATGGTGAATCCTAACTGGTCTGAGGGCAAGGCCATAGATGAAGATTGCTGGTCTGATGTCGATTACTGCAGAGCCACTAAGAATTGGTATACCCTTGGGAAAACACTTGCGGAGATTGAGGCCTTTGATTATGCGAAGAGAAGTGGATTGGATCTTGTGACACTCTGCCCATCGTTGGTGATTGGACCTTTGCTGCAACCAACTGTGAATGCGAGCAGTACAGTCATACTTGGATGTCTGAAAGGTGATTGTGAGGTAAAAATCAAACTGAGGAACTTTGTGGATGTCAGGGATGTTGCC GATGCTCTTCTTTTACTGTATGAAACCCCAGGGGTCTCCGGAC GATACATCTGCAGTTCAC ACGCAAGAAGGATGCCTCATATCATTGACTTACTAAAGAGCTGGTATCCCGGTTACAAATTTGCCGACAAGTTTGTGGAAGTGAGCG ATGAGCCGCAATTCAACTCGGGGAAGCTAGAGAAGCTAGGATGGAAAATCAAGCCATTTGAGGAAACACTCAGGGACAGTGTTGAATCTTATAGAGCTGCAGGTGTCCTGGATTGAGC AAATGGTGTCCTGTGTATATACC AACACAATTGAAGGAATTACCAACACATTGATCGGGTTCTAGGCTTAGTTTAATAGATCTACTACATAGGTGTTTGTTTTGATCGACCTTAATTGGATCTGGCCTCTTTGGC AACATCTGTATGTA AGAGCTGCCTATTTGGCAGCAGCTGGGAGTAGAAGATAAAATTATCTTTTGGTGATGGATTTGCGCTGAGAATTATGCCATTTATGCCCTGAACATGAGAGTGACTTGATGTACCTGTGTGATAAGCTTTATATGAGGC] [+] EMBL AU108152 [ GACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAA CAGNA GGAAACTNTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTNTGACTTGGGTATAGGGGCGAAAGACTAATCGAACNATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCT GGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATNATTAGAGGCATCGGGGGCGCAACG CCTCGG ACCTATTCTNAAACTTTAAATAGGTAGGACGNCGCGGCTTGCTC ] [+] EMBL AK073641 [ agttgtACCATAGCAATGTTGGGCGGCGACGGGAGAACGAAGACGGTGTGCGTGACCGGCGCCGGGGGCTTCGTGGCGTCGTGGCTCGTCAAGCTCCTCCTCTCCCGCGGCTGCTACACCGTCCATGGCACCGTCCGTGATCCAGGCGACGCCAAGAACGCCCACCTGATGTCTCTGGACGGCGCCGCGGAGAGGCTGCGGCTGTTCAAGGCCGACCTGCTCGACTACGGCAGCGTGGCGGCGGCCATCGCCGGCTGCGACGACGTCTTCCATGTGGCCTGCCCCGTGCTCCTCTCCGCCCCCAACCCAGAGGTTGATATACTTGCTCCTGCTGTAACGGGCACGACGAATGTGCTGAAGGCTTGTTCAGAAGCTAAGGTTGGGAGGGTTGTGGTGGTGTCATCTGTCTCTGCTGCGATGGTGAATCCTAACTGGTCTGAGGGCAAGGCCATAGATGAAGATTGCTGGTCTGATGTCGATTACTGCAGAGCCACTAAGAATTGGTATACCCTTGGGAAAACACTTGCGGAGATTGAGGCCTTTGATTATGCGAAGAGAAGTGGATTGGATCTTGTGACACTCTGCCCATCGTTGGTGATTGGACCTTTGCTGCAACCAACTGTGAATGCGAGCAGTACAGTCATACTTGGATGTCTGAAAGGTGATTGTGAGGTAAAAATCAAACTGAGGAACTTTGTGGATGTCAGGGATGTTGCC GATGCTCTTCTTTTACTGTATGAAACCCCAGGGGTCTCCGGAC GATACATCTGCAGTTCAC ACGCAAGAAGGATGCCTCATATCATTGACTTACTAAAGAGCTGGTATCCCGGTTACAAATTTGCCGACAAGTTTGTGGAAGTGAGCG ATGAGCCGCAATTCAACTCGGGGAAGCTAGAGAAGCTAGGATGGAAAATCAAGCCATTTGAGGAAACACTCAGGGACAGTGTTGAATCTTATAGAGCTGCAGGTGTCCTGGATTGAGC AAATGGTGTCCTGTGTATATACC AACACAATTGAAGGAATTACCAACACATTGATCGGGTTCTAGGCTTAGTTTAATAGATCTACTACATAGGTGTTTGTTTTGATCGACCTTAATTGGATCTGGCCTCTTTGGC AACATCTGTATGTA AGAGCTGCCTATTTGGCAGCAGCTGGGAGTAGAAGATAAAATTATCTTTTGGTGATGGATTTGCGCTGAGAATTATGCCAT ] [+] EMBL CF306971 [ CGACGACGTCTTCC TGTGTTCTGCCCCGTGCTCCTCTCCGCCCCCAACCCAGAGGTTGATATACTTGCTCCTGCTGTAACGGGCACGACGAATGTGCTGAAGGCTTGTTCAGAAGCTAAGGTTGGGAGGGTTGTGGTGGTGTCATCTGTCTCTGCTGCGATGGTGATTCTTAACTGGTCTGAGGGCAAGGCCATAGATGAAGATTGCTGGTCTGATGTCGATTACTGCAGAGCCACTAAGAATTGGTATACCCTTGGGAAAACACTTGCGGAGATTGAGGCCTTTGATTATGCGAAGAGAAGTGGATTGGATCTTGTGACACTCTGCCCATCGTTGGTGATTGGACCTTTGCTGCAACCAACTGTGAATGCGAGCAGTACAGTCATACTTGGATGTCTGAAAGGTGATTGTGAGGTAAAAATCAAACTGAGGAACTTTGTGGATGTCAGGGATGTTGCC GATGCTCTTCTTTTACTGT ] [+] EMBL BI811271 [ ATTGTGAGGTAAAAATCAAACTGAGGAACTTTGTGGATGTCAGGGATGTTGCCAGATGCTCTTCTTTTACTGTATGAAACCCCAGGGGTCTCCGGACAGATACATCT CAGTTCACAACGCAAGAAGGATGCCTCATATCATTGACTTACTAAAGAGCTGGTATCCCGGTTACAAATTTGCCGACAAGTTTGTGGAAGTGAGCG ATGA CCGCAATTCAACTCGGGGAAGCTAGAGAAGCTAGGATGGAAAATCAAGCCATTTGAGGAAACACTCAGGGACAGTGTTGAATCTTATAGAGCTGCAGGTGTCCTGGATTGAGC AAATGGTGTCCTGTGTATATACCAAACACAATTGAAGGAATTACCAACACATTGATCGGGTTCTAGGCTTAGTTTAATAGATCTACTACATAGGTGTTTGTTTTGATCGACCTTAATTGGATCTGGCCTCTTTGGCAAACATCTGTATGCA AGAGCTGCCTATTTGGCAGCAGCTGGGAGTAGAAGATAAAATTATCTTTTGGTGATGGATTTGCGCTGAGAATTATGCCATTTATGCCCTAAAAAAAA ] [-] EMBL CF311692 [ GTGGATGTCAGGGATGTTGCC GATGCTCTTCTTTTACTGTATGAAA CCCAGGGGTCTCCGGAC GATACATCTGCAGTTCAC ACGCAAGAAGGATGCCTCATATCATTGACTTACTAAAGAGCTGGTATCCCGGTTACAAATTTGCCGACAAGTTTGTGGAAGTGAGCG ATGAGCCGCAATTCAACTCGGGGAAGCTAGAGAAGCTAGGATGGAAAATCAAGCCATTTGAGGAAACACTCAGGGACAGTGTTGAATCTTATAGAGCTGCAGGTGTCCTGGATTGAGC AAATGGTGTCCTGTGTATATACC AACACAATTGAAGGAATTACCAACACATTGATCGGGTTCTAGGCTTAGTTTAATAGATCTACTACATAGGTGTTTGTTTTGATCGACCTTAATTGGATCTGGCCTCTTTGGC AACATCTGTATGTA AGAGCTGCCTATTTGGCAGCAGCTGGGAGTAGAAGATAAAATTATCTTTTGGTGATGGATTTGCGCTGAGAATTATGCCATTTATGCCCTGAAAAAAAa ] [+] EMBL BI807470 [ AACCCCAGGGGTCTCCGGAC GATACATCTGCAGTTCAC ACGCAAGAAGGATGCCTCATATCATTGACTTACTAAAGAGCTGGTATCCCGGTTACAAATTTGCCGACAAGTTTGTGGAAGTGAGCG ATGAGCCGC ATTCAACTCGGGGAAGCTAGAGAAGCTAGGATGGAAAATCAAGCCATTTGAGGAAACACTCAGGGACAGTGTTGAATCTTATAGAGCTGCAGGTGTCCTGGATTGAGCAAAATGGTGTCCTGTGTATATACC AACAC ATTGAAGGAATTACCAACACATTGATCGGGTTCTAGGCTTAGTTTAATAGATCTACTACATAGGTGTTTGTTTTGATCGACCTTAATTGGATCTGGCCTCTTTGGC AACATCTGTATGCA AGAGCTGCCTATTTGGCAGCAGCTGGGAGTAGAAGATAAAATTATCTTTTGGTGAaaaaa ] [+] EMBL BI811652 [ TTGTGGAAGTGAGCGTATGAGCCGCAATTCAACTCGGGGAAGCTAGAGAAGCTAGGATGGAAAATCAAGCCATTTGAGGAAACACTCAGGGACAGTGTTGAATCTTATAGAGCTGCAGGTGTCCTGGATTGA C AAATGGTGTCCTGTGTATATACC AACAC ATTGAAGGAATTACCCACACATTGATCGGGTTCTAGGCTTAGTTTAATAGATCTACTACATAGGTGTTTGTTTTGATCGACCTTAATTGGATCTGGCCTCTTTGGC AACATCTGTATGCACAGAGCTGCCTATTTGGCAGCAGCTGGGAGTAGAAGATAAAATTATCTTTTGGTGAaaaaaaaaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||