These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1047 fasta sequence [GCGAAAAAATTCGCACGAACCCGAAAACCCTTTTCTCCATCGCCTCCCCCTCCGCCGCGCCGCCACTTCTCTCCTCTCCTCCTCTCGCCGCTCCCAGGGTTTCGCGCGAGATCTACTCTAGCATTCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGGCGGCGGAGAGCTACACGGTGGAGGAGCTCGTCGCCGTGAACCCCTACAACCCCGACATCCTCAACGACCTCGAGGGCTTCGTCAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTCGTCTGTACCAGTTCGAACCAGAAAGGTTGAGTGTGCAGATTGTATCTCGCATATTGATTAAGGCTCTCATGGCAATGCCAGGCCCGGACTTCAGCCTATGCTTATTCTTAATTCCAGAGCATGTGCAAATGGAGGAACAGTTCAAGACGTTGATAGTTCTCTCTCACTACCTGGAGACTGCTAGGTTCCGTCAATTTTGGGATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGTTCCAGGTTTTGAGCAGGCAATCCAATCCTATGCGATACATGTGCTCTCCTTGACATACCAGAAAGTTCCTAGGCCTGTTCTTGCGGAGGCCATCAACATTGAGGGTCTTGCATTGGACAAGTTCCTGGAGCACCATATTGCAAACTCCGGTTGGGTGATCGAGAAGGGTGCACGATCTCAGCTGATTGTCCTTCCACGCAACGAGTTCAATCACCCTGAGCTCAAGAAGAACACAGCTGAAACTGTTCCGTTCGAGCATGTAACTCGCATATTCCCTGTCCTTAGCTGAGTCAACAACCAGACCAACTGAGATTTTGCATTACAGAACTTCTGAGCGCGTGAAGATACTCTGGGCGCATCTGTTTTCTCTGCTGTGATGTACTGCGTTTTGATATGCCTGTTTTAGCTAAACAAGTCAATTCTAGTGACGATCCGAGCGTCATATCTGCCTAGTTATGTTTATGTAAGCATTCTGCCATGATATTACATTGTTGGCAAGATATTTTATC] [+] EMBL C26795 [GCGAAAAAATTCGCACGAACCCGAAAACCCTTTTCTCCATCGCCTCCCCCTCCGCCGCGCCGCCACTTCTCTNCTCTCCTCCTNTCGCCGCTCCCAGGGTTTCGCGCGAGATCTACTCTAGNATTCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGTTGGNGGAGAGCTACACGGTGGAGGAGCTCGTCGCCGNGAACCCCTACAANCCCGNCATTCTCAACGACCTCGAGGNNTTCGTNAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTCGTCTGT ] [+] EMBL AK073293 [ CCGAAAACCCTTTTCTCCATCGCCTCCCCCTCCGCCGCGCCGCCACTTCTCTCCTCTCCTCCTCTCGCCGCTCCCAGGGTTTCGCGCGAGATCTACTCTAGCATTCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGGCGGCGGAGAGCTACACGGTGGAGGAGCTCGTCGCCGTGAACCCCTACAACCCCGACATCCTCAACGACCTCGAGGGCTTCGTCAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTCGTCTGTACCAGTTCGAACCAGAAAGGTTGAGTGTGCAGATTGTATCTCGCATATTGATTAAGGCTCTCATGGCAATGCCAGGCCCGGACTTCAGCCTATGCTTATTCTTAATTCCAGAGCATGTGCAAATGGAGGAACAGTTCAAGACGTTGATAGTTCTCTCTCACTACCTGGAGACTGCTAGGTTCCGTCAATTTTGGGATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGTTCCAGGTTTTGAGCAGGCAATCCAATCCTATGCGATACATGTGCTCTCCTTGACATACCAGAAAGTTCCTAGGCCTGTTCTTGCGGAGGCCATCAACATTGAGGGTCTTGCATTGGACAAGTTCCTGGAGCACCATATTGCAAACTCCGGTTGGGTGATCGAGAAGGGTGCACGATCTCAGCTGATTGTCCTTCCACGCAACGAGTTCAATCACCCTGAGCTCAAGAAGAACACAGCTGAAACTGTTCCGTTCGAGCATGTAACTCGCATATTCCCTGTCCTTAGCTGAGTCAACAACCAGACCAATTGAGATTTTGCATTACAGAACTTCTGAGCGCGTGAAGATACTCTGGGCGCATCTGTTTTCTCTGCTGTGATGTACTGCGTTTTGATATGCCTGTTTTAGCTAAACAAGTCAATTCTAGTGACGATCCGAGCGTCATATCTGCCTAGTTATGTTTATGTAAGCATTCTGCCATGATATTACATTGTTGGCAAGATATTTTATC] [+] EMBL AK120235 [ CCGAAAACCCTTTTCTCCATCGCCTCCCCCTCCGCCGCGCCGCCACTTCTCTCCTCTCCTCCTCTCGCCGCTCCCAGGGTTTCGCGCGAGATCTACTCTAGCATTCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGGCGGCGGAGAGCTACACGGTGGAGGAGCTCGTCGCCGTGAACCGCTACAACCCCGACATCCTCAACGACCTCGAGGGCTTCGTCAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTCGTCTGTACCAGTTCGAACCAGAAAGGTTGAGTGTGCAGATTGTATCTCGCATATTGATTAAGGCTCTCATGGCAATGCCAGGCCCGGACTTCAGCCTATGCTTATTCTTAATTCCAGAGCATGTGCAAATGGAGGAACAGTTCAAGACGTTGATAGTTCTCTCTCACTACCTGGAGACTGCTAGGTTCCGTCAATTTTGGGATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGTTCCAGGTTTTGAGCAGGCAATCCAATCCTATGCGATACATGTGCTCTCCTTGACATACCAGAAAGTTCCTAGGCCTGTTCTTGCGGAGGCCATCAACATTGAGGGTCTTGCATTGGACAAGTTCCTGGAGCACCACATTGCAAACTCCGGTTGGGTGATCGAGAAGGGTGCACGATCTCAGCTGATTGTCCTTCCACGCAACGAGTTCAATCACCCTGAGCTCAAGAAGAACACAGCTGAAACTGTTCCGTTCGAGCATGTAACTCGCATATTCCCTGTCCTTAGCTGAGTCAACAACCAGACCAACTGAGATTTTGCATTACAGAACTTCTGAGCGCGTGAAGATACTCTGGGCGCATCTGTTTTCTCTGCTGTGATGTACTGCGTTTTGATATGCCTGTTTTAGCTAAACAAGTC ] [+] EMBL CF339338 [ CCTCTCCTCCTCTCGCCGCTCCCAGGGTTTCGCGCGAGATCTACTCTAGCATTCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGGCGGCGGAGAGCTACACGGTGGAGGAGCTCGTCGCCGTGAACCCCTACAACCCCGACATTCTCAACGACCTCGAGGGCTTCGTCAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTCGTCTGTACCAGTTCGAACCAGAAAGGTTGAGTGTGCAGATTGTATCTCGCATATTGATTAAGGCTCTCATGGCAATGCCAGGCCCGGACTTCAGCCTATGCTTATTCTTAATTCCAGAGCATGTGCAAATGGAGGAACAGTTCAAGACGTTGATAGTTCTCTCTCACTACCTGGAGACTGCTAGGTTCCGTCAATTTTGGGATGAAGCGTCGAAGAACCGCAACATATTGGATGTTGTTCCAGGTTTTGAGCAGGCAATCCAATCCTATGCGATACATGTGCTCTCC ] [+] EMBL CF328195 [ CCTCTCCTCCTCTCGCCGCTCCC GGGTTTCGCGCGATATCTACTCTAGCATTCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGGCGGCGGAGAGCTACACGGTGGAGGAGCTCGTCGCCGTGAACCCCTACAACCCCGACATCCTCAACGACCTCGAGGGCTTCGTCAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTCGTCTGTACCAGTTCGAACCAGAAAGGTTGAGTGTGCAGATTGTATCTCGCATATTGATTAAGGCTCTCATGGCAATGCCAGGCCCGGACTTCAGCCTATGCTTATTCTTAATTCCAGAGCATGTGCAAATGGAGGAACAGTTCAAGACGTTGATAGTTCTCTCTCACTACCTGGAGACTGCTAGGTTCCGTCAATTTTGGGATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGTTCCAGGTTTTGAGCAGGCAATCCAATCCTATGCGATACATGTGCTCT ] [+] EMBL CF317758 [ TCGCCGCTCCC GGGTTTCGCGCGAGATCTACTCTATCATGCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGACCAGGCGGCGGAGAGCTGCACGGTGGAGGAGCTCGTCGCCGTGAACCCCTACAACCCCGACATCCTCAACGACCTCGAGGGCTTCCTCAACGATCATGTTTCCAACCAAACATAT ] [+] EMBL CA999965 [ CAGGGTTTCGCGCGAGATCTACTCTAGCATTCGCGTGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGGCGGCGGAGAGCTACACGGTGGAGGAGCTCGTCGCCGTGAACCCCTACAACCCCGACATCCTCAACGACCTCGAGGGCTTCGTCAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTCGTCTGTACCAGTTCGAACCAGAAAGGTTGAGTGTGCAGATTGTATCTCGCATATTGATTAAGGCTCTCATGGCAATGCCAGGCCCGGACTTCAGCCTATGCTTATTCTTAATTCCAGAGCATGTGCAAATGGAGGAACAGTTCAAGACGTTGATAGTTCTCTCTCACTACCTGGAGACTGCTAGGTTCCGTCAATTTTGGGATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGTTCCAGGTTTTGAGCAGGCAATCCAATCCTATGCGATACATGTGCTCTCCTTGACATACCAGAAAGTTCCTAGGCCTGTTCTTGCGGAGGCCATCAACATTGAGGGTCTTGCATTGGACAAGTTCCTGGAGCACCATATTCCAAACTCCGGTTGGGTGATCGAGAAGGGTGCACGATCTCAGCTGATTGTCCTTCCACGCAACGAGTTCAATCACCCTGAGCTCAAGAAGAACACAGCTGAAACTGTTCCGTTCGAGCATGTAACTCGCATATTCCCTGTCCTTAGCTGAGTCAACAACCAGACCAACTGAGATTTTGCATTACAGAACTTCTGAGCGCGTGAAGATACTCTGGGCGCATCTGTTTTC ] [+] EMBL CA757418 [ GGGTTTCGCGCGAGATCTACTCTAGCATTCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGGCGGCGGAGAGCTACACGGTGGAGGAGCTCGTCGCCGTGAACCCCTACAACCCCGACATCCTCAACGACCTCGAGGGCTTCGTCAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTCGTCTGTACCAGTTCGAACCAGAAAGGTTGAGT ] [-] EMBL CF337210 [ AAGGGTGCACGATCTCAGCTGATTGTCCTCCCACGCAACGAGTTCAATCACCCTGAGCTCAAGAAGAACACAGCTGAAACTGTTCCGTTCGAGCATGTAACTCGCATATTCCCTGTCCTTAGCTGAGTCAACAACCAGACCAACTGAGATTTTGCAT ] consensusID : consensus_12129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 251 fasta sequence [AGTTCTCTCTCACTACCTGGGAGACTGCTAGGTTCCGTCAATTTTGGGGATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGTTCCAGGTTTTGAGCAGGCAATCCAATTCCTATGCGATACATGTGCYCTYCTTGACATACAGAAAGTTCTAAGGCTGTTCTTGCCGAAGGCCAWWYCACCATGAAGGGTCYTGCMATTGRMCARGTTCCTKGRRSMMCMAWTATGGCAAMMCYCCGGTTKGGTTAG] [+] EMBL AA752650 [AGTTCTCTCTCACTACCTGGGAGACTGCTAGGTTCCGTCAATTTTGGGGATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGTTCCAGGTTTTGAGCAGGCAATCCAATTCCTATGCGATACATGTGCYCTYCTTGACATACAGAAAGTTCTAAGGCTGTTCTTGCCGAAGGCCAWWYCACCATGAAGGGTCYTGCMATTGRMCARGTTCCTKGRRSMMCMAWTATGGCAAMMCYCCGGTTKGGTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12129#0 GCGAAAAAATTCGCACGAACCCGAAAACCCTTTTCTCCATCGCCTCCCCCTCCGCCGCGC 60 consensus_12129#1 ------------------------------------------------------------ consensus_12129#0 CGCCACTTCTCTCCTCTCCTCCTCTCGCCGCTCCCAGGGTTTCGCGCGAGATCTACTCTA 120 consensus_12129#1 ------------------------------------------------------------ consensus_12129#0 GCATTCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGGCGGCGGAGAGCTACACGG 180 consensus_12129#1 ------------------------------------------------------------ consensus_12129#0 TGGAGGAGCTCGTCGCCGTGAACCCCTACAACCCCGACATCCTCAACGACCTCGAGGGCT 240 consensus_12129#1 ------------------------------------------------------------ consensus_12129#0 TCGTCAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTC 300 consensus_12129#1 ------------------------------------------------------------ consensus_12129#0 GTCTGTACCAGTTCGAACCAGAAAGGTTGAGTGTGCAGATTGTATCTCGCATATTGATTA 360 consensus_12129#1 ------------------------------------------------------------ consensus_12129#0 AGGCTCTCATGGCAATGCCAGGCCCGGACTTCAGCCTATGCTTATTCTTAATTCCAGAGC 420 consensus_12129#1 ------------------------------------------------------------ consensus_12129#0 ATGTGCAAATGGAGGAACAGTTCAAGACGTTGATAGTTCTCTCTCACTACCTGG-AGACT 479 consensus_12129#1 ----------------------------------AGTTCTCTCTCACTACCTGGGAGACT 26 ******************** ***** consensus_12129#0 GCTAGGTTCCGTCAATTTTGGG-ATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGT 538 consensus_12129#1 GCTAGGTTCCGTCAATTTTGGGGATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGT 86 ********************** ************************************* consensus_12129#0 TCCAGGTTTTGAGCAGGCAATCCAAT-CCTATGCGATACATGTGCTCTCCTTGACATACC 597 consensus_12129#1 TCCAGGTTTTGAGCAGGCAATCCAATTCCTATGCGATACATGTGCYCTYCTTGACATAC- 145 ************************** ****************** ** ********** consensus_12129#0 AGAAAGTTCCTAGGCCTGTTCTTGC-GGAGGCCAT--CAACATTGAGGGTCTTGCA-TTG 653 consensus_12129#1 AGAAAGTTCTAAGGC-TGTTCTTGCCGAAGGCCAWWYCACCATGAAGGGTCYTGCMATTG 204 ********* **** ********* * ****** ** *** ****** *** *** consensus_12129#0 GACAAGTTCCTGGAGCACCA--TATTGCAAAC-TCCGGTTGGGTGATCGAGAAGGGTGCA 710 consensus_12129#1 RMCARGTTCCTKGRRSMMCMAWTATGGCAAMMCYCCGGTTKGGTTAG------------- 251 ** ****** * * *** **** ****** *** * consensus_12129#0 CGATCTCAGCTGATTGTCCTTCCACGCAACGAGTTCAATCACCCTGAGCTCAAGAAGAAC 770 consensus_12129#1 ------------------------------------------------------------ consensus_12129#0 ACAGCTGAAACTGTTCCGTTCGAGCATGTAACTCGCATATTCCCTGTCCTTAGCTGAGTC 830 consensus_12129#1 ------------------------------------------------------------ consensus_12129#0 AACAACCAGACCAACTGAGATTTTGCATTACAGAACTTCTGAGCGCGTGAAGATACTCTG 890 consensus_12129#1 ------------------------------------------------------------ consensus_12129#0 GGCGCATCTGTTTTCTCTGCTGTGATGTACTGCGTTTTGATATGCCTGTTTTAGCTAAAC 950 consensus_12129#1 ------------------------------------------------------------ consensus_12129#0 AAGTCAATTCTAGTGACGATCCGAGCGTCATATCTGCCTAGTTATGTTTATGTAAGCATT 1010 consensus_12129#1 ------------------------------------------------------------ consensus_12129#0 CTGCCATGATATTACATTGTTGGCAAGATATTTTATC 1047 consensus_12129#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||