cluster # 12135

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Oryza sativa
cluster # 12135 cluster # 12135 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12135#0 length = 1779 sequences # 6

consensus_12135#1 length = 829 sequences # 3
consensus_12135#2 length = 817 sequences # 1

consensusID : consensus_12135#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1779
fasta sequence

                              [ACGCTTTCATCCCCACCTTGTCTCCCACACAAATGTCGCCGGCGCGGCGCCTCGCCGTGCTCCGCTCCCACCTCCAGCCCGCCGCCCCTGCCGGCGAAGGCGACCGGGACGTCGTCGTGTGCGCGGAGCAAGCCGCGGGGGTCTCGACCTCCCCTTGCTCCGCCGCCGCCGCCGGGGGCGGGCGGGAAGCCGAGGGGAAGAGCTGCGTGTTCTGCCGGATCATCCGCGGCGAGGCGCCGGCCTTCAAGGTCTATGAAGATGATGTATGCCTGTGCATATTGGATTCTCATCCATTGGCGCCTGGGTAAATTGCTTCTCTATCTTCTCCATATTGTCACTGTATTGTACTGTTGTACGATTGGTAGGGAGGATTTCTATCTGGATCAAAATCCTCTACTGTGTTAGCTTCCCACAAGTTCTGGCAGAAGGGAGAGAGATATATTGGATTCAGTGGCTAAGTTAGTTATCAAGAAGAAGAACTTCATCAGAGGATGACATGTGGGTTCTTAGTATTTCTTTTAATATAAAAAAAACTATTTGCTGATTTACAAACTAACAAAGTTGTATCTATGTGCCATCCTTGTCAGCATAGCATGAGCACATAGGTGCCATATCAGCCTAAATTGGTTTTGCGTATGATGAATGGGTGTTTTCCTTTGGCTTTGAGAACTCGAGGATATCAAATGCTTGATTTCGGAATTGAATTTGAGGATTGGTCCGGATTTATAAAAAAAAATTGACAGGTGTAAACTGAAGTATCGTTAATTAATTGGCACCCCTTTTGCTTATTTTTGTGATAATACTGCATCATGTTCAATATATTGAATAAAAGAGTCTTTACCTTTTCTCGTTACTTCATCCTAGCTTTTTACTCCATGGTATCTTGTTAACATTTTTTCCCTCTACAGGCATTCCTTGATTATTCCAAAATGCCATTTTCCATCACTGGAAGCAACACCACCACATATTCATTTAACATGGTGGTTAATAATGGAGCAGCTGCAGGACAAGTTATTTTCCATACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAGAGAGTTTGAGAAGGCGCTCCATCGAGCCTAACGAAACTCCAGGCCTTGTTAGCTGCATCAAAGAGCAGCTCTATTCTTCACCAGAAGGCTGTAAAGCCGAACCACCATCTTCACTGCCCAAGGAACGGTGACACCAAAGCTGTGATCCAGTCCGGTACATAATGCTCCTCAGTTGCATATTGAAATCAAATTGCCCCATTTGGGAGTGTGGGATTCAGTTTCAGAGTTGGAGGGTGTATGGTAATTTATCCTTGGGCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGTATCTGGTGTATAAATCAGACAACAAGGACTCAGTACAGCATTGTTATGCCCTGCTGTCGGGTGTCTGCCTGTCTGGTTTCCTCACTTTCTGGAGTGGGGCTGAAATCCAACAGCCATG-TTGTACTGTGTTTGGCACTTTGGCTGGTAGTGGATGATAGCCATGGCGAAG-CTGAAGATTTGTGGACAGAGCATGGGGTTGTGTTGGGTTTGATGCGTGGAAGTGTGTTTGGACTCTCACACGGCAGCGGCCACGCGGATTTTGTTGTGGGCTCGATCTGCTTCTCCAGTTGTGATGCGCAGCATCATTTCACTTATGTTTATAGGTACGA--TTCATCGTATGAGTATATCTATTCTTCATAAAAAAAAAAAAAAAACAAAGTCATGCCGTTACGTAGCGTATCGTTGAC]

[+] EMBL AK109826             [ACGCTTTCATCCCCACCTTGTCTCCCACACAAATGTCGCCGGCGCGGCGCCTCGCCGTGCTCCGCTCCCACCTCCAGCCCGCCGCCCCTGCCGGCGAAGGCGACCGGGACGTCGTCGTGTGCGCGGAGCAAGCCGCGGGGGTCTCGACCTCCCCTTGCTCCGCCGCCGCCGCCGGGGGCGGGCGGGAAGCCGAGGGGAAGAGCTGCGTGTTCTGCCGGATCATCCGCGGCGAGGCGCCGGCCTTCAAGGTCTATGAAGATGATGTATGCCTGTGCATATTGGATTCTCATCCATTGGCGCCTGGGTAAATTGCTTCTCTATCTTCTCCATATTGTCACTGTATTGTACTGTTGTACGATTGGTAGGGAGGATTTCTATCTGGATCAAAATCCTCTACTGTGTTAGCTTCCCACAAGTTCTGGCAGAAGGGAGAGAGATATATTGGATTCAGTGGCTAAGTTAGTTATCAAGAAGAAGAACTTCATCAGAGGATGACATGTGGGTTCTTAGTATTTCTTTTAATATAAAAAAAACTATTTGCTGATTTACAAACTAACAAAGTTGTATCTATGTGCCATCCTTGTCAGCATAGCATGAGCACATAGGTGCCATATCAGCCTAAATTGGTTTTGCGTATGATGAATGGGTGTTTTCCTTTGGCTTTGAGAACTCGAGGATATCAAATGCTTGATTTCGGAATTGAATTTGAGGATTGGTCCGGATTTATAAAAAAAAATTGACAGGTGTAAACTGAAGTATCGTTAATTAATTGGCACCCCTTTTGCTTATTTTTGTGATAATACTGCATCATGTTCAATATATTGAATAAAAGAGTCTTTACCTTTTCTCGTTACTTCATCCTAGCTTTTTACTCCATGGTATCTTGTTAACATTTTTTCCCTCTACAGGCATTCCTTGATTATTCCAAAATGCCATTTTCCATCACTGGAAGCAACACCACCACATATTCATTTAACATGGTGGTTAATAATGGAGCAGCTGCAGGACAAGTTATTTTCCATACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAGAGAGTTTGAGAAGGCGCTCCATCGAGCCTAACGAAACTCCAGGCCTTGTTAGCTGCATCAAAGAGCAGCTCTATTCTTCACCAGAAGGCTGTAAAGCCGAACCACCATCTTCACTGCCCAAGGAACGGTGACACCAAAGCTGTGATCCAGTCCGGTACATAATGCTCCTCAGTTGCATATTGAAATCAAATTGCCCCATTTGGGAGTGTGGGATTCAGTTTCAGAGTTGGAGGGTGTATGGTAATTTATCCTTGGGCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGTATCTGGTGTATAAATCAGACAACAAGGACTCAGTACAGCATTGTTATGCCCTGCTGTCGGGTGTCTGCCTGTCTGGTTTCCTCACTTTCTGGAGTGGGGCTGAAATCCAACAGCCATG TTGTACTGTGTTTGGCACTTTGGCTGGTAGTGGATGATAGCCATGGCGAAG CTGAAGATTTGTGGACAGAGCATGGGGTTGTGTTGGGTTTGATGCGTGGAAGTGTGTTTGGACTCTCACACGGCAGCGGCCACGCGGATTTTGTTGTGGGCTCGATCTGCTTCTCCAGTTGTGATGCGCAGCATCATTTCACTTATGTTTATAGGTACGA  TTCATCGTATGAGTATATC                                                           ]
[-] EMBL CB681962             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGACAAGTTATTTTCCATACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAGAGAGTTTGAGAAGGCGCTCCATCGAGCCTAACGAAACTCCAGGCCTTGTTAGCTGCATCAAAGAGCAGCTCTATTCTTCACCAGAAGGCTGTAAAGCCGAACCACCATCTTCACTGCCCAAGGAACGGTGACACCAAAGCTGTGATCCAGTCCGGTACATAATGCTCCTCAGTTGCATATTGAAATCAAATTGCCCCATTTGGGAGTGTGGGATTCAGTTTCAGAGTTGGAGGGTGTATGGTAATTTATCCTTGGGCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGTATCTGGTGTATAAATCAGACAACAAGGACTCAGTACAGCATTGTTATGCCCTGCTGTCGGGTGTCTGCCTGTCTGGTTTCCTCACTTTCTGGAGTGGGGCTGAAATCCAACAGCCATG TTGTACTGTGTTTGGCACTTTGGCTGGTAGTGGATGATAGCCATGGCGAAG CTGAAGATTTGTGGACAGAGCATGGGGTTGTGTTGGGTTTGATGCGTGGAAGTGTGTTTGGACTCTCACACGGCAGCGGCCACGCGGATTTTGTTGTGGGCTCGATCTGCTTCTCCAGTTGTGATGCGCAGCATCATTTCACTTATGTTTATAGGTACGA  TTCATCGTATGAGTATATCTATTCTTCATAcga                                             ]
[+] EMBL BQ906657             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGAACCACCATCTTCACTGCCCAAGGAACGGTGACACCAAAGCTGTGATCCAGTCCGGTACATAATGCTCCTCAGTTGCATATTGAAATCAAATTGCCCCATTTGGGAGTGTGGGATTCAGTTTCAGAGTTGGAGGGTGTATGGTAATTTATCCTTGGGCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGTATCTGGTGTATAAATCAGACAACAAGGACTCAGTACAGCATTGTTATGCCCTGCTGTCGGGTGTCTGCCTGTCTGGTTTCCTCACTTTCTGGAGTGGGGCTGAAATCCAACAGCCATG TTGTACTGTGTTTGGCACTTTGGCTGGTAGTGGATGATAGCCATGGCGAAG CTGAAGATTTGTGGACAGAGCATGGGGTTGTGTTGGGTTTGATGCGTGGAAGTGTGTTTGGACTCTCACACAGCAGCGGCCACGCGGATTTTGTTGTGGGCTCGATCTGCTTCTCCAGTTGTGATGCGTAGCATCATTTCACTTATGTTTATAGGTACGA  TTCATCGTATGAGTATATCTATTCTTCAAAAA                                              ]
[-] EMBL CF329908             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGGAACGGTGACACCAAAGCTGTGATCCAGTCCGGTACATAATGCTCCTCAGTTGCATATTGAAATCAAATTGCCCCATTTGGGAGTGTGGGATTCAGTTTCAGAGTTGGAGGGTGTATGGTAATTTATCCTTGGGCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGTATCTGGTGTATAAATCAGACAACAAGGACTCAGTACAGCATTGTTATGCCCTGCTGTCGGGTGTCTGCCTGTCTGGTTTCCTCACTTTCTGGAGTGGGGCTGAAATCCAACAGCCATGNTTGTACTGTGTTTGGCACTTTGGCTGGTAGTGGATGATAGCCATGGCGAAG CTGAAGATTTGTGGACAGAGCATGGGGTTGTGTTGGGTTTGATGCGTGGAAGTGTGTTTGGACTCTCACACGGCAGCGGCCACGCGGATTTTGTTGTGGGCTCGATCTGCTTCTCCAGTTGTGATGCGCAGCATCATTTCACTTATGTTTATAGGTACGA  TTCATCGTATGAGTATATCTATTCTTCAAAAAAAAAAAAAAAAAACAAAGTCATGCCGTTACGTAGCGTATCGTTGAC]
[+] EMBL BI803061             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGTATGGTAATTTATCCTTGGGCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGTATCTGGTGTATAAATCAGACAACAAGGGCTCAGTACAGCATTGTTATGCCCTGCTGTCGGGTGTCTGCCTGTCTGGTTTCCTCACTTTCTGGAGTGGGGCTGAAATCCAACAGCCATG TTGTACTGTGTTTGGCACTTTGGCTGGTAGTGGATGATAGCCATGGCGAAGACTGAAGATTTGTGGACAGAGCATGGGGTTGTGTTGGGTTTGATGCGTGGAAGTGTGTTTGGACTCTCACACAGCAGCGGCCACGCGGATTTTGTTGTGGGCTCGATCTGCTTCTCCAGTTGTGATGCGTAGCATCATTTCACTTATGTTTATAGGTACGACCTCCCTCGTATGAGTATATCTATTCTTCATAAAAA                                            ]
[+] EMBL BI803955             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGTATGGTAATTTATCCTTGGGCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGTATCTGGTGTATAAATCAGACAACAAGGGCTCAGTACAGCATTGTTATGCCCTGCTGTCGGGTGTCTGCCTGTCTGGTTTCCTCACTTTCTGGAGTGGGGCTGAAATCC ACAGCCATG TTGTACTGTGTTTGGCACTTTGGCTGGTAGTGGATGATAGCCATGGCGAAG CTGAAGATTTGTGGACAGAGCATGGGGTTGTGTTGGGTTTGATGCGTGGAAGTGTGTTTGGACTCTCACACAGCAGCGGCCACGCGGATTTTGTTGTGGGCTCGATCTGCTTCTCCAGTTGTGATGCGTAGCATCATTTCACTTATGTTTATAGGTACGA  TTCATCGTATGAGTATATCTATTCTTCATAAAAA                                            ]




>consensus_12135#0
ACGCTTTCATCCCCACCTTGTCTCCCACACAAATGTCGCCGGCGCGGCGCCTCGCCGTGC
TCCGCTCCCACCTCCAGCCCGCCGCCCCTGCCGGCGAAGGCGACCGGGACGTCGTCGTGT
GCGCGGAGCAAGCCGCGGGGGTCTCGACCTCCCCTTGCTCCGCCGCCGCCGCCGGGGGCG
GGCGGGAAGCCGAGGGGAAGAGCTGCGTGTTCTGCCGGATCATCCGCGGCGAGGCGCCGG
CCTTCAAGGTCTATGAAGATGATGTATGCCTGTGCATATTGGATTCTCATCCATTGGCGC
CTGGGTAAATTGCTTCTCTATCTTCTCCATATTGTCACTGTATTGTACTGTTGTACGATT
GGTAGGGAGGATTTCTATCTGGATCAAAATCCTCTACTGTGTTAGCTTCCCACAAGTTCT
GGCAGAAGGGAGAGAGATATATTGGATTCAGTGGCTAAGTTAGTTATCAAGAAGAAGAAC
TTCATCAGAGGATGACATGTGGGTTCTTAGTATTTCTTTTAATATAAAAAAAACTATTTG
CTGATTTACAAACTAACAAAGTTGTATCTATGTGCCATCCTTGTCAGCATAGCATGAGCA
CATAGGTGCCATATCAGCCTAAATTGGTTTTGCGTATGATGAATGGGTGTTTTCCTTTGG
CTTTGAGAACTCGAGGATATCAAATGCTTGATTTCGGAATTGAATTTGAGGATTGGTCCG
GATTTATAAAAAAAAATTGACAGGTGTAAACTGAAGTATCGTTAATTAATTGGCACCCCT
TTTGCTTATTTTTGTGATAATACTGCATCATGTTCAATATATTGAATAAAAGAGTCTTTA
CCTTTTCTCGTTACTTCATCCTAGCTTTTTACTCCATGGTATCTTGTTAACATTTTTTCC
CTCTACAGGCATTCCTTGATTATTCCAAAATGCCATTTTCCATCACTGGAAGCAACACCA
CCACATATTCATTTAACATGGTGGTTAATAATGGAGCAGCTGCAGGACAAGTTATTTTCC
ATACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAGAGAGTT
TGAGAAGGCGCTCCATCGAGCCTAACGAAACTCCAGGCCTTGTTAGCTGCATCAAAGAGC
AGCTCTATTCTTCACCAGAAGGCTGTAAAGCCGAACCACCATCTTCACTGCCCAAGGAAC
GGTGACACCAAAGCTGTGATCCAGTCCGGTACATAATGCTCCTCAGTTGCATATTGAAAT
CAAATTGCCCCATTTGGGAGTGTGGGATTCAGTTTCAGAGTTGGAGGGTGTATGGTAATT
TATCCTTGGGCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGTATCTGGTG
TATAAATCAGACAACAAGGACTCAGTACAGCATTGTTATGCCCTGCTGTCGGGTGTCTGC
CTGTCTGGTTTCCTCACTTTCTGGAGTGGGGCTGAAATCCAACAGCCATGTTGTACTGTG
TTTGGCACTTTGGCTGGTAGTGGATGATAGCCATGGCGAAGCTGAAGATTTGTGGACAGA
GCATGGGGTTGTGTTGGGTTTGATGCGTGGAAGTGTGTTTGGACTCTCACACGGCAGCGG
CCACGCGGATTTTGTTGTGGGCTCGATCTGCTTCTCCAGTTGTGATGCGCAGCATCATTT
CACTTATGTTTATAGGTACGATTCATCGTATGAGTATATCTATTCTTCATAAAAAAAAAA
AAAAAACAAAGTCATGCCGTTACGTAGCGTATCGTTGAC

consensusID : consensus_12135#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 829
fasta sequence

                              [GCTTTCATCCCCACCTTGTCTCCCACACAAATGTCGCCGGCCTTCAAGGTCTATGAAGATGATGTATGCCTGTGCATATTGGATTCTCATCCATTGGCGCCTGGGCATTCCTTGATTATTCCAAAATGCCATTTTCCATCACTGGAAGCAACACCACCACATGTAGTAGCAGCCATGTGTTCCAAAGTGCCATTTCTTAGTAATGCAATTATGAAGGCTACTCAATGTGATTCATTTAACATGGTGGTTAATAATGGGGCAGCTGCAGGACAAGTTATTTTCCATACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAGAGAGTTTGAGAAGGCGCTCCATCGAGCCTAACGAAACTTCAGGCCTTGTTAGCTGCATCAAAGAGCAGCTCTATTCTTCACCAGAAGGCTGTAAAGCCGAACCACCATCTTCACTGCCCAAGGAACGGTGACACCAAAGCTGTGATCCAGTCCGGTACATAATGCTCCTTAGTTGCATATTGAAATCAAATTGCCCCATTTGGGAGTGTGGGATTCAGTTTCAGAGTTGGAGGGTGTATGGTAATTTATCCTTGGGCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGTATCTGGTGTATAAATCAGACAACAAGGGCTCAGTACAGCATTGNTATGCCCTGCTGTCGGGTGTCTGCCTGTCTGGTTTCCTCACTTTCTGGAGTGGGGCTGNAATNCAACAGCCATGNTGTACTGNGNTTGGCACTTTGGCTGGTAGTGGATGATAGCCATGGCGAAGCTGNAGATTAAAAAAAAAAAAAAAA]

[+] EMBL CF304030             [GCTTTCATCCCCACCTTGTCTCCCACACAAATGTCGCCGGCCTTCAAGGTCTATGAAGATGATGTATGCCTGTGCATATTGGATTCTCATCCATTGGCGCCTGGGCATTCCTTGATTATTCCAAAATGCCATTTTCCATCACTGGAAGCAACACCACCACATGTAGTAGCAGCCATGTGTTCCAAAGTGCCATTTCTTAGTAATGCAATTATGAAGGCTACTCAATGTGATTCATTTAACATGGTGGTTAATAATGGAGCAGCTGCAGGACAAGTTATTTTCCATACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAGAGAGTTTGAGAAGGCGCTCCATCGAGCCTAACGAAACTCCAGGCCTTGTTAGCTGCATCAAAGAGCAGCTCTATTCTTCACCAGAAGGCTGTAAAGCCGAACCACCATCT                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA767600             [                                                 aggggGAAGATGATGTATGCCTGTGCATATCGGATTCTCATCCATTGGCGCCTGGGCATTCCTTGATTATTCCAAAATGCCATTTTCCATCACTGGAAGCAACACCACCACATGTAGTAGCAGCCATGTGTTCCAAAGTGCCATTTCTTAGTAATGCAATTATGAAGGCTACTCAATGTGATTCATTTAACATGGTGGTTAATAATGGGGCAGCTGCAGGACAAGTTATTTTCCATACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAGAGAGTTTGAGAAGGCGCTCCATCGAGCCTAACGAAACTTCAGGCCTTGTTAGCTGCATCAAAGAGCAGCTCTATTCTTCACCAGAAGGCTGTAAAGCCGAACCACCATCTTCACTGCCCAAGGAACGGTGACACCAAAGCTGTGATCCAGTCCGGTACATAATGCTCCTTAGTTGCATATTGAAATCAAATTGCCCCATTTGGGAGTGTGGGATTCAGTTTCAGAGTTGGAGGGTGTATGGTAATTTATCCTTGGGCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGTATCTGGTGTATAAATCAGACAACAAGGGCTCAGTACAGCATTGNTATGCCCTGCTGTCGGGTGTCTGCCTGTCTGGTTTCCTCACTTTCTGGAGTGGGGCTGNAATNCAACAGCCATGNTGTACTGNGNTTGGCACTTTGGCTGGTAGTGGATGATAGCCATGGCGAAGCTGNA                    ]
[+] EMBL CA762482             [                                                                                                                                                                      TAGCAGCCATGTGTTCCAAAGTGCCATTTCTTAGTAATGCAATTATGAAGGCTACTCAATGTGATTCATTTAACATGGTGGTTAATAATGGGGCAGCTGCAGGACAAGTTATTTTCCATACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAGAGAGTTTGAGAAGGCGCTCCATCGAGCCTAACGAAACTTCAGGCCTTGTTAGCTGCATCAAAGAGCAGCTCTATTCTTCACCAGAAGGCTGTAAAGCCGAACCACCATTTTCACTGCCCAAGGAACGGTGACACCAAAGCTGTGATCCAGTCCGGTACATAATGCTCCTCAGTTGCATATTGAAATCAAATTGCCCCATTTGGGAGTGTGGGATTCAGTTTCAGAGTTGGAGGGTGTATGGTAATTTATCCTTGGGCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGTATCTGGTGTATAAATCAGACAACAAGGGCTCAGTACAGCATTGTTATGCCCTGCTGTCGGGTGTCTGCCTGTCTGGTTTCCTCACTTTCTGGAGTGGGGCTGAAATCCAACAGCCATGTTGTACTGTGTTTGGCACTTTGGCTGGTAGTGGATGATAGCCATGGCGAAGCTGAAGATTAAAAAAAAAAAAAAAA]




>consensus_12135#1
GCTTTCATCCCCACCTTGTCTCCCACACAAATGTCGCCGGCCTTCAAGGTCTATGAAGAT
GATGTATGCCTGTGCATATTGGATTCTCATCCATTGGCGCCTGGGCATTCCTTGATTATT
CCAAAATGCCATTTTCCATCACTGGAAGCAACACCACCACATGTAGTAGCAGCCATGTGT
TCCAAAGTGCCATTTCTTAGTAATGCAATTATGAAGGCTACTCAATGTGATTCATTTAAC
ATGGTGGTTAATAATGGGGCAGCTGCAGGACAAGTTATTTTCCATACCCATTTCCACATA
ATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAGAGAGTTTGAGAAGGCGCTCCATC
GAGCCTAACGAAACTTCAGGCCTTGTTAGCTGCATCAAAGAGCAGCTCTATTCTTCACCA
GAAGGCTGTAAAGCCGAACCACCATCTTCACTGCCCAAGGAACGGTGACACCAAAGCTGT
GATCCAGTCCGGTACATAATGCTCCTTAGTTGCATATTGAAATCAAATTGCCCCATTTGG
GAGTGTGGGATTCAGTTTCAGAGTTGGAGGGTGTATGGTAATTTATCCTTGGGCGTTGTT
GTACTTGTAATAGTTTCTCATAGGTCTGCAACTGTATCTGGTGTATAAATCAGACAACAA
GGGCTCAGTACAGCATTGNTATGCCCTGCTGTCGGGTGTCTGCCTGTCTGGTTTCCTCAC
TTTCTGGAGTGGGGCTGNAATNCAACAGCCATGNTGTACTGNGNTTGGCACTTTGGCTGG
TAGTGGATGATAGCCATGGCGAAGCTGNAGATTAAAAAAAAAAAAAAAA

consensusID : consensus_12135#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 817
fasta sequence

                              [CCATGTGTTCCAAAGTGCCATTTCTTAGTAATGCAATTATGAAGGCTACTCAATGTGATTCATTTAACATGGTGGTTAATAATGGAGCAGCTGCAGGACAAGTTATTTTCCATACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAGAGAGTTTGAGAAGGCGCTCCATCGAGCCTAACGAAACTCCAGGCCTTGTTAGCTGCATCAAAGAGCAGCTCTATTCTTCACCAGAAGGCTGTAAAGCCGAACCACCATCTTCACTGCCCAAGGAACGGTGACACCAAAGCTGTGATCCAGTCCGGTACATAATGCTCCTCAGTTGCATATTGAAATCAAATTGCCCCATTTGGGAGTGTGGGATTCAGTTTCAGAGTTGGAGGGTGTATGGTAATTTATCCTTGGGCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGTATCTGGTGTATAAATCAGACAACAAGGACTCAGTACAGCATTGTTATGCCCTGCTGTCGGGTGTCTGCCTGTCTGGTTTCCTCACTTTCTGGAGTGGGGCTGAAATCCAACAGCCATGTTGTACTGTGTTTGGCACTTTGGCTGGTAGTGGATGATAGCCATGGCGAAGCTGAAGATTTGTGGACAGAGCATGGGGTTGTGTTGGGTTTGATGCGTGGAAGTGTGTTTGGACTCTCACACGGCAGCGGCCACGCGGATTTTGTTGTGGGCTCGATCTGCTTCTCCAGTTGTGATGCGCAGCATCATTTCACTTATGTTTATGGGTACGATTCATCGTATGAGTATATCTATTCT]

[-] EMBL CB660066             [CCATGTGTTCCAAAGTGCCATTTCTTAGTAATGCAATTATGAAGGCTACTCAATGTGATTCATTTAACATGGTGGTTAATAATGGAGCAGCTGCAGGACAAGTTATTTTCCATACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAGAGAGTTTGAGAAGGCGCTCCATCGAGCCTAACGAAACTCCAGGCCTTGTTAGCTGCATCAAAGAGCAGCTCTATTCTTCACCAGAAGGCTGTAAAGCCGAACCACCATCTTCACTGCCCAAGGAACGGTGACACCAAAGCTGTGATCCAGTCCGGTACATAATGCTCCTCAGTTGCATATTGAAATCAAATTGCCCCATTTGGGAGTGTGGGATTCAGTTTCAGAGTTGGAGGGTGTATGGTAATTTATCCTTGGGCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGTATCTGGTGTATAAATCAGACAACAAGGACTCAGTACAGCATTGTTATGCCCTGCTGTCGGGTGTCTGCCTGTCTGGTTTCCTCACTTTCTGGAGTGGGGCTGAAATCCAACAGCCATGTTGTACTGTGTTTGGCACTTTGGCTGGTAGTGGATGATAGCCATGGCGAAGCTGAAGATTTGTGGACAGAGCATGGGGTTGTGTTGGGTTTGATGCGTGGAAGTGTGTTTGGACTCTCACACGGCAGCGGCCACGCGGATTTTGTTGTGGGCTCGATCTGCTTCTCCAGTTGTGATGCGCAGCATCATTTCACTTATGTTTATGGGTACGATTCATCGTATGAGTATATCTATTCT]




>consensus_12135#2
CCATGTGTTCCAAAGTGCCATTTCTTAGTAATGCAATTATGAAGGCTACTCAATGTGATT
CATTTAACATGGTGGTTAATAATGGAGCAGCTGCAGGACAAGTTATTTTCCATACCCATT
TCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAGAGAGTTTGAGAAGGC
GCTCCATCGAGCCTAACGAAACTCCAGGCCTTGTTAGCTGCATCAAAGAGCAGCTCTATT
CTTCACCAGAAGGCTGTAAAGCCGAACCACCATCTTCACTGCCCAAGGAACGGTGACACC
AAAGCTGTGATCCAGTCCGGTACATAATGCTCCTCAGTTGCATATTGAAATCAAATTGCC
CCATTTGGGAGTGTGGGATTCAGTTTCAGAGTTGGAGGGTGTATGGTAATTTATCCTTGG
GCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGTATCTGGTGTATAAATCA
GACAACAAGGACTCAGTACAGCATTGTTATGCCCTGCTGTCGGGTGTCTGCCTGTCTGGT
TTCCTCACTTTCTGGAGTGGGGCTGAAATCCAACAGCCATGTTGTACTGTGTTTGGCACT
TTGGCTGGTAGTGGATGATAGCCATGGCGAAGCTGAAGATTTGTGGACAGAGCATGGGGT
TGTGTTGGGTTTGATGCGTGGAAGTGTGTTTGGACTCTCACACGGCAGCGGCCACGCGGA
TTTTGTTGTGGGCTCGATCTGCTTCTCCAGTTGTGATGCGCAGCATCATTTCACTTATGT
TTATGGGTACGATTCATCGTATGAGTATATCTATTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12135#0      ACGCTTTCATCCCCACCTTGTCTCCCACACAAATGTCGCCGGCGCGGCGCCTCGCCGTGC 60
consensus_12135#2      ------------------------------------------------------------
consensus_12135#1      ------------------------------------------------------------
                                                                                   

consensus_12135#0      TCCGCTCCCACCTCCAGCCCGCCGCCCCTGCCGGCGAAGGCGACCGGGACGTCGTCGTGT 120
consensus_12135#2      ------------------------------------------------------------
consensus_12135#1      ------------------------------------------------------------
                                                                                   

consensus_12135#0      GCGCGGAGCAAGCCGCGGGGGTCTCGACCTCCCCTTGCTCCGCCGCCGCCGCCGGGGGCG 180
consensus_12135#2      ------------------------------------------------------------
consensus_12135#1      ------------------------------------------------------------
                                                                                   

consensus_12135#0      GGCGGGAAGCCGAGGGGAAGAGCTGCGTGTTCTGCCGGATCATCCGCGGCGAGGCGCCGG 240
consensus_12135#2      ------------------------------------------------------------
consensus_12135#1      ------------------------------------------------------------
                                                                                   

consensus_12135#0      CCTTCAAGGTCTATGAAGATGATGTATGCCTGTGCATATTGGATTCTCATCCATTGGCGC 300
consensus_12135#2      ------------------------------------------------------------
consensus_12135#1      ------------------------------------------------------------
                                                                                   

consensus_12135#0      CTGGGTAAATTGCTTCTCTATCTTCTCCATATTGTCACTGTATTGTACTGTTGTACGATT 360
consensus_12135#2      ------------------------------------------------------------
consensus_12135#1      ------------------------------------------------------------
                                                                                   

consensus_12135#0      GGTAGGGAGGATTTCTATCTGGATCAAAATCCTCTACTGTGTTAGCTTCCCACAAGTTCT 420
consensus_12135#2      ------------------------------------------------------------
consensus_12135#1      ------------------------------------------------------------
                                                                                   

consensus_12135#0      GGCAGAAGGGAGAGAGATATATTGGATTCAGTGGCTAAGTTAGTTATCAAGAAGAAGAAC 480
consensus_12135#2      ------------------------------------------------------------
consensus_12135#1      ------------------------------------------------------------
                                                                                   

consensus_12135#0      TTCATCAGAGGATGACATGTGGGTTCTTAGTATTTCTTTTAATATAAAAAAAACTATTTG 540
consensus_12135#2      ------------------------------------------------------------
consensus_12135#1      ------------------------------------------------------------
                                                                                   

consensus_12135#0      CTGATTTACAAACTAACAAAGTTGTATCTATGTGCCATCCTTGTCAGCATAGCATGAGCA 600
consensus_12135#2      ------------------------------------------------------------
consensus_12135#1      ------------------------------------------------------------
                                                                                   

consensus_12135#0      CATAGGTGCCATATCAGCCTAAATTGGTTTTGCGTATGATGAATGGGTGTTTTCCTTTGG 660
consensus_12135#2      ------------------------------------------------------------
consensus_12135#1      ------------------------------------------------------------
                                                                                   

consensus_12135#0      CTTTGAGAACTCGAGGATATCAAATGCTTGATTTCGGAATTGAATTTGAGGATTGGTCCG 720
consensus_12135#2      ------------------------------------------------------------
consensus_12135#1      ------------------------------------------------------------
                                                                                   

consensus_12135#0      GATTTATAAAAAAAAATTGACAGGTGTAAACTGAAGTATCGTTAATTAATTGGCACCCCT 780
consensus_12135#2      ------------------------------------------------------------
consensus_12135#1      -----------------------GCTTTCATCCCCACCTTGTCTCCCACACAAATGTCGC 37
                                                                                   

consensus_12135#0      TTTGCTTATTTTTGTGATAATACTGCATCATGTTCAATATATTGAATAAAAGAGTCTTTA 840
consensus_12135#2      ------------------------------------------------------------
consensus_12135#1      CGGCCTTCAAGGTCTATGAAGATGATGTATGCCTGTGCATATTGGATTCTCATCCATTGG 97
                                                                                   

consensus_12135#0      CCTTTTCTCGTTACTTCATCCTAGCTTTTTACTCCATGGTATC-TTGTTAACATTTTTTC 899
consensus_12135#2      ------------------------------------------------------------
consensus_12135#1      CGCCTGGGCATTCCTTGATTATTCCAAAATGCCATTTTCCATCACTGGAAGCAACACCAC 157
                                                                                   

consensus_12135#0      CCTCTACAGGCATT-CCTTGATTATTCCAAAATGCCATTTTCCATCACTGGAAGCA---A 955
consensus_12135#2      ---------------CCATG--TGTTCCAAAGTGCCATTTCTTAGTAATGCAATTATGAA 43
consensus_12135#1      CACATGTAGTAGCAGCCATG--TGTTCCAAAGTGCCATTTCTTAGTAATGCAATTATGAA 215
                                      ** **  * ******* ********   *  * ** **  *   *

consensus_12135#0      CACCACCACAT---ATTCATTTAACATGGTGGTTAATAATGGAGCAGCTGCAGGACAAGT 1012
consensus_12135#2      GGCTACTCAATGTGATTCATTTAACATGGTGGTTAATAATGGAGCAGCTGCAGGACAAGT 103
consensus_12135#1      GGCTACTCAATGTGATTCATTTAACATGGTGGTTAATAATGGGGCAGCTGCAGGACAAGT 275
                         * **   **   **************************** *****************

consensus_12135#0      TATTTTCCATACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTAC 1072
consensus_12135#2      TATTTTCCATACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTAC 163
consensus_12135#1      TATTTTCCATACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTAC 335
                       ************************************************************

consensus_12135#0      AGAGAGTTTGAGAAGGCGCTCCATCGAGCCTAACGAAACTCCAGGCCTTGTTAGCTGCAT 1132
consensus_12135#2      AGAGAGTTTGAGAAGGCGCTCCATCGAGCCTAACGAAACTCCAGGCCTTGTTAGCTGCAT 223
consensus_12135#1      AGAGAGTTTGAGAAGGCGCTCCATCGAGCCTAACGAAACTTCAGGCCTTGTTAGCTGCAT 395
                       **************************************** *******************

consensus_12135#0      CAAAGAGCAGCTCTATTCTTCACCAGAAGGCTGTAAAGCCGAACCACCATCTTCACTGCC 1192
consensus_12135#2      CAAAGAGCAGCTCTATTCTTCACCAGAAGGCTGTAAAGCCGAACCACCATCTTCACTGCC 283
consensus_12135#1      CAAAGAGCAGCTCTATTCTTCACCAGAAGGCTGTAAAGCCGAACCACCATCTTCACTGCC 455
                       ************************************************************

consensus_12135#0      CAAGGAACGGTGACACCAAAGCTGTGATCCAGTCCGGTACATAATGCTCCTCAGTTGCAT 1252
consensus_12135#2      CAAGGAACGGTGACACCAAAGCTGTGATCCAGTCCGGTACATAATGCTCCTCAGTTGCAT 343
consensus_12135#1      CAAGGAACGGTGACACCAAAGCTGTGATCCAGTCCGGTACATAATGCTCCTTAGTTGCAT 515
                       *************************************************** ********

consensus_12135#0      ATTGAAATCAAATTGCCCCATTTGGGAGTGTGGGATTCAGTTTCAGAGTTGGAGGGTGTA 1312
consensus_12135#2      ATTGAAATCAAATTGCCCCATTTGGGAGTGTGGGATTCAGTTTCAGAGTTGGAGGGTGTA 403
consensus_12135#1      ATTGAAATCAAATTGCCCCATTTGGGAGTGTGGGATTCAGTTTCAGAGTTGGAGGGTGTA 575
                       ************************************************************

consensus_12135#0      TGGTAATTTATCCTTGGGCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGT 1372
consensus_12135#2      TGGTAATTTATCCTTGGGCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGT 463
consensus_12135#1      TGGTAATTTATCCTTGGGCGTTGTTGTACTTGTAATAGTTTCTCATAGGTCTGCAACTGT 635
                       ************************************************************

consensus_12135#0      ATCTGGTGTATAAATCAGACAACAAGGACTCAGTACAGCATTGTTATGCCCTGCTGTCGG 1432
consensus_12135#2      ATCTGGTGTATAAATCAGACAACAAGGACTCAGTACAGCATTGTTATGCCCTGCTGTCGG 523
consensus_12135#1      ATCTGGTGTATAAATCAGACAACAAGGGCTCAGTACAGCATTGNTATGCCCTGCTGTCGG 695
                       *************************** *************** ****************

consensus_12135#0      GTGTCTGCCTGTCTGGTTTCCTCACTTTCTGGAGTGGGGCTGAAATCCAACAGCCATGTT 1492
consensus_12135#2      GTGTCTGCCTGTCTGGTTTCCTCACTTTCTGGAGTGGGGCTGAAATCCAACAGCCATGTT 583
consensus_12135#1      GTGTCTGCCTGTCTGGTTTCCTCACTTTCTGGAGTGGGGCTGNAATNCAACAGCCATGNT 755
                       ****************************************** *** *********** *

consensus_12135#0      GTACTGTGTTTGGCACTTTGGCTGGTAGTGGATGATAGCCATGGCGAAGCTGAAGATTTG 1552
consensus_12135#2      GTACTGTGTTTGGCACTTTGGCTGGTAGTGGATGATAGCCATGGCGAAGCTGAAGATTTG 643
consensus_12135#1      GTACTGNGNTTGGCACTTTGGCTGGTAGTGGATGATAGCCATGGCGAAGCTGNAGATTAA 815
                       ****** * ******************************************* *****  

consensus_12135#0      TGGACAGAGCATGGGGTTGTGTTGGGTTTGATGCGTGGAAGTGTGTTTGGACTCTCACAC 1612
consensus_12135#2      TGGACAGAGCATGGGGTTGTGTTGGGTTTGATGCGTGGAAGTGTGTTTGGACTCTCACAC 703
consensus_12135#1      AAAAAAAAAAAAAA---------------------------------------------- 829
                          * * *  *                                                 

consensus_12135#0      GGCAGCGGCCACGCGGATTTTGTTGTGGGCTCGATCTGCTTCTCCAGTTGTGATGCGCAG 1672
consensus_12135#2      GGCAGCGGCCACGCGGATTTTGTTGTGGGCTCGATCTGCTTCTCCAGTTGTGATGCGCAG 763
consensus_12135#1      ------------------------------------------------------------
                                                                                   

consensus_12135#0      CATCATTTCACTTATGTTTATAGGTACGATTCATCGTATGAGTATATCTATTCTTCATAA 1732
consensus_12135#2      CATCATTTCACTTATGTTTATGGGTACGATTCATCGTATGAGTATATCTATTCT------ 817
consensus_12135#1      ------------------------------------------------------------
                                                                                   

consensus_12135#0      AAAAAAAAAAAAAACAAAGTCATGCCGTTACGTAGCGTATCGTTGAC 1779
consensus_12135#2      -----------------------------------------------
consensus_12135#1      -----------------------------------------------