Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12140 cluster # 12140       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12140#0 length = 1799 sequences # 4  
consensus_12140#1 length = 1397 sequences # 2  
consensus_12140#2 length = 805 sequences # 4  

consensusID : consensus_12140#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1799
fasta sequence
                              [ACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGATTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACCGTGCCGCGATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTAGCAAGCGGCGCCTGCGCCCGCCGCCCGCCCCGACCCACGTTAGGGGCGCAAGCCCCCAAGGGCCCGTGCCACCGGCGAGCGTCGTCGCAGAGCTACAACGCGATATACAACTTCGGCGACTCCATCACCGACACCGGCAACCTCTGCACCGGCGGCTGCCCGTCGTGGCTCACCACCGGCCAGCCTCCCTACGGCAACACCTTCTTCGGCCGCCCCACCGGCCGCTGCACCAACGGCCGCGTCATCATCGACTTCCTAGCTGATCGCTTCGGATTGCCGCTGCTCCCGCCGTCGAAGGCGAGCGGCGGCGACTTCAAGAAGGGCGCGAACATGGCCATCATCGGCGCCACCACCATGAACTTCGACTTCTTCCAGTCGCTCGGGTTGGGCAACAGCATCTGGAACAACGGCCCTCTGGACACCCAAATCCAGTGGTTCCAGCAGCTCTTGCCCTCCATCTGCGGCAACGATTGCAAGAGCTACCTGAGCAAGTCGCTGTTCATCGTGGGCGAGTTCGGGGGCAACGACTACAACGCCCCTCTCTTCGGCGGCAAGAGCATGGACGAGGTGAAAGGCTACGTGCCTCAGATCATCGCCAAGATCACAAGCGGCGTAGATACGCTGATCGGGCTGGGAGCGGTGGACATCGTGGTGCCGGGGGTGATGCCGATCGGGTGCTTCCCGCTGTACCTGACGCTGTACCAGAGCTCCAACTCCGACGACTACGACGGCAATGGCTGCCTCAAGAGCTACAACTCCCTCTCCGTCTACCACAACGGCCTGCTCAAGCAGGGGCTCGCCGGCGTCCAGGCCAAGTACCCGGCCGTCCGCCTCATGTACGGCAACTTCTACGACCAGGTCACCCAGATGGTTCAGTCTCCCGGGAGTTTCGGGCTACAATATGGCCTGAAAGTGTGCTGCGGCGCCGGTGGGCAAGGCTCCTACAACTACAATAACAAGGCGAGGTGTGGCATGTCAGGGGCAAGTGCCTG-TGGAGACCCGGAGAATTAC-TTGGTC-TGGGATGGCATTCACCTCACCGAGGCTGCCTACCGTTCGATCGCGGATGGATGGCTCAGCGGGCCATACTGTAGCCCAGCTATTCTGCACTGAGCTGCAGCCTGCAGCTGGGCTATTTTCATGTTCGTAATAAATTAATACTACTGTATCACAGTATATGTTGTTATATATGGCAGGGG--ATACTCTGGAAAATAATGCTAGGGTCTAGGG-AAATGGAATGGAAATATGGGAGCCACTGGTGGTTTGAATCTCATTACATGATTACTCATGTATGCATTTTCGAGCACTGCCAATGTATTTTTACTCCAAAATTCAATACATTTCCACTNATGTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK105422             [ACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGATTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACCGTGCCGCGATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTAGCAAGCGGCGCCTGCGCCCGCCGCCCGCCCCGACCCACGTTAGGGGCGCAAGCCCCCAAGGGCCCGTGCCACCGGCGAGCGTCGTCGCAGAGCTACAACGCGATATACAACTTCGGCGACTCCATCACCGACACCGGCAACCTCTGCACCGGCGGCTGCCCGTCGTGGCTCACCACCGGCCAGCCTCCCTACGGCAACACCTTCTTCGGCCGCCCCACCGGCCGCTGCACCAACGGCCGCGTCATCATCGACTTCCTAGCTGATCGCTTCGGATTGCCGCTGCTCCCGCCGTCGAAGGCGAGCGGCGGCGACTTCAAGAAGGGCGCGAACATGGCCATCATCGGCGCCACCACCATGAACTTCGACTTCTTCCAGTCGCTCGGGTTGGGCAACAGCATCTGGAACAACGGCCCTCTGGACACCCAAATCCAGTGGTTCCAGCAGCTCTTGCCCTCCATCTGCGGCAACGATTGCAAGAGCTACCTGAGCAAGTCGCTGTTCATCGTGGGCGAGTTCGGGGGCAACGACTACAACGCCCCTCTCTTCGGCGGCAAGAGCATGGACGAGGTGAAAGGCTACGTGCCTCAGATCATCGCCAAGATCACAAGCGGCGTAGATACGCTGATCGGGCTGGGAGCGGTGGACATCGTGGTGCCGGGGGTGATGCCGATCGGGTGCTTCCCGCTGTACCTGACGCTGTACCAGAGCTCCAACTCCGACGACTACGACGGCAATGGCTGCCTCAAGAGCTACAACTCCCTCTCCGTCTACCACAACGGCCTGCTCAAGCAGGGGCTCGCCGGCGTCCAGGCCAAGTACCCGGCCGTCCGCCTCATGTACGGCAACTTCTACGACCAGGTCACCCAGATGGTTCAGTCTCCCGGGAGTTTCGGGCTACAATATGGCCTGAAAGTGTGCTGCGGCGCCGGTGGGCAAGGCTCCTACAACTACAATAACAAGGCGAGGTGTGGCATGTCAGGGGCAAGTGCCTG TGGAGACCCGGAGAATTAC TTGGTC TGGGATGGCATTCACCTCACCGAGGCTGCCTACCGTTCGATCGCGGATGGATGGCTCAGCGGGCCATACTGTAGCCCAGCTATTCTGCACTGAGCTGCAGCCTGCAGCTGGGCTATTTTCATGTTCGTAATAAATTAATACTACTGTATCACAGTATATGTTGTTATATATGGCAGGGG  ATACTCTGGAAAATAATGCTAGGGTCTAGGG AAATGGAATGGAAATATGGGAGCCACTGGTGGTTTGAATCTCATTACATGATTACTCATGTATGCATTTTCGAGCACTGCCAATGTATTTTTACTCCAAAATTCAATACATTTCCAC                                              ]
[+] EMBL AU075888             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CACAAGCGGCGTAGATACGCTGATCGGGCTGGGAGCGGTGGACATCGTGGTGCCGGGGGTGATGCCGATCGGGTGCTTCCCGCTGTACCTGACGCTGTACCAGAGCTCCAACTCCGACGACTACGACGGCAATGGCTGCCTCAAGAGCTACAACTCCCTCTCCGTCTACCACAACGGCCTGCTCAAGCA GGGCTCGCCGGCNTCCAGGCCAAGTACCCNGCCGTCCGCCTCATGTACGGCAACTTCTACGACCAGGTCACCCAGATGGTTCAGTCTCCCGGGAGTTTCGGGCTACAATATGGCCTGAAAGTGTGCTGCGGCGCCGGTGGGAAAGGCTNCTACAACTACAATAACAAGGCGAGGTGTNGCATGTCAGGGGCAAGTGCTTGTTGGAGACCCGGAGAATTACTTTGGTCTTGGGATNGCATTCACCTTANCGA                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CA763435             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAGAGCTACAACTCCCTCTCCGTCTACCACANCGGCCTGCTCAAGCAGGGGCTCGCCGGCGTCCAGGCCAAGTACCCGGCCGTCCGCCTCATGTACGGCAACTTCTACGACCAGGTCACCCAGATGGTTCAGTCTCCCGGGAGTTTCGGGCTACAATATGGCCTGAAAGTGTGNTGCGGCGCCGGTGGGCAAGGCTCCTACAACTACAATAACAAGGCGAGGTGTGGCATGTCAGGGGCAAGTGCCTG TGGAGACCCGGAGAATTAC TTGGTC TGGGATGGCATTCACCTCACCGAGGCTGCCTACCGTTCGATCGCGGATGGATGGCTCAGCGGGCCATACTGTAGCCCAGCTATTCTGCACTGAGCTGCAGCCTGCAGCTGGGCTATTTTCATGTTCGTAATAAATTAATACTACTGTATCACCGTATATGTTGTTATATATGGCAGGGGATATACTCTGGAAAATAATGCTAGGGTCTAGGGAAAATGGAATGGAAATATGGGAGCCACTGGTGGTTCGAATCTCATTACATGATTACTCATGTATGCATTTTCGAGCAaaaaaa                                                                                 ]
[+] EMBL AU032777             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGCTCAGCGGGCCATACTNTACCCCAGCTATTCTGCACTGAGCTGCAGCCTGCAGCTGGGCTATTTTCATGTTCGTAATAAATTAATACTACTGTATCNCAGTATATGTTGTTATATATGGCAGGGG  ATACTCTGGAAAATAATGCTAGGGTCTAGGG AAATGGAATGGAAATATGGGAGCCACTGGTGGTTTGAATCTCATTACATGATTACTCATGTATGCATTTTCGAGCACTGCCAATGTATTTTTACTCCAAAATTCAATACATTTCCNCTNATGTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_12140#0 ACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCT AGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGC GACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACC AAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGATTAGACCGTCGTGAGA CAGGTTAGTTTTACCCTACTGATGACCGTGCCGCGATAGTAATTCAACCTAGTACGAGAG GAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCT ACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTAGCAAGCGGCGC CTGCGCCCGCCGCCCGCCCCGACCCACGTTAGGGGCGCAAGCCCCCAAGGGCCCGTGCCA CCGGCGAGCGTCGTCGCAGAGCTACAACGCGATATACAACTTCGGCGACTCCATCACCGA CACCGGCAACCTCTGCACCGGCGGCTGCCCGTCGTGGCTCACCACCGGCCAGCCTCCCTA CGGCAACACCTTCTTCGGCCGCCCCACCGGCCGCTGCACCAACGGCCGCGTCATCATCGA CTTCCTAGCTGATCGCTTCGGATTGCCGCTGCTCCCGCCGTCGAAGGCGAGCGGCGGCGA CTTCAAGAAGGGCGCGAACATGGCCATCATCGGCGCCACCACCATGAACTTCGACTTCTT CCAGTCGCTCGGGTTGGGCAACAGCATCTGGAACAACGGCCCTCTGGACACCCAAATCCA GTGGTTCCAGCAGCTCTTGCCCTCCATCTGCGGCAACGATTGCAAGAGCTACCTGAGCAA GTCGCTGTTCATCGTGGGCGAGTTCGGGGGCAACGACTACAACGCCCCTCTCTTCGGCGG CAAGAGCATGGACGAGGTGAAAGGCTACGTGCCTCAGATCATCGCCAAGATCACAAGCGG CGTAGATACGCTGATCGGGCTGGGAGCGGTGGACATCGTGGTGCCGGGGGTGATGCCGAT CGGGTGCTTCCCGCTGTACCTGACGCTGTACCAGAGCTCCAACTCCGACGACTACGACGG CAATGGCTGCCTCAAGAGCTACAACTCCCTCTCCGTCTACCACAACGGCCTGCTCAAGCA GGGGCTCGCCGGCGTCCAGGCCAAGTACCCGGCCGTCCGCCTCATGTACGGCAACTTCTA CGACCAGGTCACCCAGATGGTTCAGTCTCCCGGGAGTTTCGGGCTACAATATGGCCTGAA AGTGTGCTGCGGCGCCGGTGGGCAAGGCTCCTACAACTACAATAACAAGGCGAGGTGTGG CATGTCAGGGGCAAGTGCCTGTGGAGACCCGGAGAATTACTTGGTCTGGGATGGCATTCA CCTCACCGAGGCTGCCTACCGTTCGATCGCGGATGGATGGCTCAGCGGGCCATACTGTAG CCCAGCTATTCTGCACTGAGCTGCAGCCTGCAGCTGGGCTATTTTCATGTTCGTAATAAA TTAATACTACTGTATCACAGTATATGTTGTTATATATGGCAGGGGATACTCTGGAAAATA ATGCTAGGGTCTAGGGAAATGGAATGGAAATATGGGAGCCACTGGTGGTTTGAATCTCAT TACATGATTACTCATGTATGCATTTTCGAGCACTGCCAATGTATTTTTACTCCAAAATTC AATACATTTCCACTNATGTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_12140#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1397
fasta sequence
                              [CAACCGAGCCTATTCACACCTCCAAGGAGCAAGGCACAAGGTTACAGACGTGTCACGTGCGCGCGCGCATCTCTCTGTCACGCACGCAACGTACTCACTTACGTGCTCAGCCATGGCGGCCAACAAGGCCGTCGTCGTTCGTCGCCGCCGTCCTCCTCCTCCTCGCCGTCGTCGCCCGGCGAGCGTCGTCGCAGAGCTACAACGCGATATACAACTTCGGCGACTCCATCACCGACACCGGCAACCTCTGCACCGGCGGCTGCCCGTCGTGGCTCACCACCGGCCAGCCTCCCTACGGCAACACCTTCTTCGGCAGCCCCACCGGCCGCTGCACCAACGGCCGCGTCATCATCGACTTCCTAGCTGATCGCTTCGGATTGCCGCTGCTCCCGCCGTCGAAGGCGAGCGGCGGCGACTTCAAGAAGGGCGCGAACATGGCCATCATCGGCGCCACCACCATGAACTTCGACTTCTTCCAGTCGCTCGGGTTGGGCAACAGCATCTGGAACAACGGCCCTCTGGACACCCAAATCCAGTGGTTCCAGCAGCTCTTGCCCTCCATCTGCGGCAACGATTGCAAGAGCTACCTGAGCAAGTCGCTGTTCATCGTGGGCGAGTTCGGGGGCAACGACTACAACGCCCCTCTCTTCGGCGGCAAGAGCATGGACGAGACGCTGATCGGGCTGGGAGCGGTGGACATCGTGGTGCCGGGGGTGATGCCGATCGGGTGCTTCCCGCTGTACCTGACGCTGTACCAGAGCTCCAACTCCGACGACTACGACGGCAATGGCTGCCTCAAGAGCTACAACTCCCTCTCCGTCTACCACAACGGCCTGCTCAAGCAGGGGCTCGCCGGCGTCCAGGCCAAGTACCAGGCCGTCCGCCTCATGTACGGCAACTTCTACGACCAGGTCACCCAGATGGTTCAGTCTCCCGGGAGTTTCGGGCTACAATATGGCCTGAAAGTGTGCTGCGGCGCCGGTGGGCAAGGCTCCTACAACTACAATAACAAGGCGAGGTGTGGCATGTCAGGGGC-AAGTGCC----TGTGGAG-ACCCGGAGAATTACTTGGTCTGGGATGGCATTCACCTCACCGAGGCTGCCTACCGTTCGATCGCGGATGGATGGCTCAGCGGGCCATACTGTAGCCCAGCTATTCTGCACTGAGCTGCAGCCTGCAGCTGGGCTATTTTCATGTTCGTAATAAATTAATACTACTGTATCACAGTATATGTTGTTATATATGGCAGGGGATACTCTGGAAAATAATGCTAGGGTCTAGGGAAATGGAATGGAAATATGGGAGCCACTGGTGGTTTGAATCTCATTACATGATTACTCATGTATGCATTTTCGAGCACTGCCAATGTATTTTTACTCCAAAATTCAATACATTTCCAC]

[+] EMBL AK103614             [CAACCGAGCCTATTCACACCTCCAAGGAGCAAGGCACAAGGTTACAGACGTGTCACGTGCGCGCGCGCATCTCTCTGTCACGCACGCAACGTACTCACTTACGTGCTCAGCCATGGCGGCCAACAAGGCCGTCGTCGTTCGTCGCCGCCGTCCTCCTCCTCCTCGCCGTCGTCGCCCGGCGAGCGTCGTCGCAGAGCTACAACGCGATATACAACTTCGGCGACTCCATCACCGACACCGGCAACCTCTGCACCGGCGGCTGCCCGTCGTGGCTCACCACCGGCCAGCCTCCCTACGGCAACACCTTCTTCGGCAGCCCCACCGGCCGCTGCACCAACGGCCGCGTCATCATCGACTTCCTAGCTGATCGCTTCGGATTGCCGCTGCTCCCGCCGTCGAAGGCGAGCGGCGGCGACTTCAAGAAGGGCGCGAACATGGCCATCATCGGCGCCACCACCATGAACTTCGACTTCTTCCAGTCGCTCGGGTTGGGCAACAGCATCTGGAACAACGGCCCTCTGGACACCCAAATCCAGTGGTTCCAGCAGCTCTTGCCCTCCATCTGCGGCAACGATTGCAAGAGCTACCTGAGCAAGTCGCTGTTCATCGTGGGCGAGTTCGGGGGCAACGACTACAACGCCCCTCTCTTCGGCGGCAAGAGCATGGACGAGACGCTGATCGGGCTGGGAGCGGTGGACATCGTGGTGCCGGGGGTGATGCCGATCGGGTGCTTCCCGCTGTACCTGACGCTGTACCAGAGCTCCAACTCCGACGACTACGACGGCAATGGCTGCCTCAAGAGCTACAACTCCCTCTCCGTCTACCACAACGGCCTGCTCAAGCAGGGGCTCGCCGGCGTCCAGGCCAAGTACCAGGCCGTCCGCCTCATGTACGGCAACTTCTACGACCAGGTCACCCAGATGGTTCAGTCTCCCGGGAGTTTCGGGCTACAATATGGCCTGAAAGTGTGCTGCGGCGCCGGTGGGCAAGGCTCCTACAACTACAATAACAAGGCGAGGTGTGGCATGTCAGGGGC AAGTGCC    TGTGGAG ACCCGGAGAATTACTTGGTCTGGGATGGCATTCACCTCACCGAGGCTGCCTACCGTTCGATCGCGGATGGATGGCTCAGCGGGCCATACTGTAGCCCAGCTATTCTGCACTGAGCTGCAGCCTGCAGCTGGGCTATTTTCATGTTCGTAATAAATTAATACTACTGTATCACAGTATATGTTGTTATATATGGCAGGGGATACTCTGGAAAATAATGCTAGGGTCTAGGGAAATGGAATGGAAATATGGGAGCCACTGGTGGTTTGAATCTCATTACATGATTACTCATGTATGCATTTTCGAGCACTGCCAATGTATTTTTACTCCAAAATTCAATACATTTCCAC]
[+] EMBL AU075889             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGGGCAAAGTGCCCTNNTG GGAGAACCCGGAGAATTACTTGGTCTGGGATGGCATTCACCTCACCGAGGCTGCCTACCGTTCGATCGCGGATGGATGGCTCAGCGGGCCATACTGTAGCCCAGCTATTCTGCACTGAGCTGCAGCCTGCAGCTGGGCTATTTTCATGTTCGTAATAAATTAATACTACTGTATCACAGTATATGTTGTTATATATGGCAGGGGATACTCTGGAAAATAATGCTAGGGTCTAGGGAAATGGAATGGAAATATGGGAGCCAaaaaaaaaa                                                                                   ]


>consensus_12140#1 CAACCGAGCCTATTCACACCTCCAAGGAGCAAGGCACAAGGTTACAGACGTGTCACGTGC GCGCGCGCATCTCTCTGTCACGCACGCAACGTACTCACTTACGTGCTCAGCCATGGCGGC CAACAAGGCCGTCGTCGTTCGTCGCCGCCGTCCTCCTCCTCCTCGCCGTCGTCGCCCGGC GAGCGTCGTCGCAGAGCTACAACGCGATATACAACTTCGGCGACTCCATCACCGACACCG GCAACCTCTGCACCGGCGGCTGCCCGTCGTGGCTCACCACCGGCCAGCCTCCCTACGGCA ACACCTTCTTCGGCAGCCCCACCGGCCGCTGCACCAACGGCCGCGTCATCATCGACTTCC TAGCTGATCGCTTCGGATTGCCGCTGCTCCCGCCGTCGAAGGCGAGCGGCGGCGACTTCA AGAAGGGCGCGAACATGGCCATCATCGGCGCCACCACCATGAACTTCGACTTCTTCCAGT CGCTCGGGTTGGGCAACAGCATCTGGAACAACGGCCCTCTGGACACCCAAATCCAGTGGT TCCAGCAGCTCTTGCCCTCCATCTGCGGCAACGATTGCAAGAGCTACCTGAGCAAGTCGC TGTTCATCGTGGGCGAGTTCGGGGGCAACGACTACAACGCCCCTCTCTTCGGCGGCAAGA GCATGGACGAGACGCTGATCGGGCTGGGAGCGGTGGACATCGTGGTGCCGGGGGTGATGC CGATCGGGTGCTTCCCGCTGTACCTGACGCTGTACCAGAGCTCCAACTCCGACGACTACG ACGGCAATGGCTGCCTCAAGAGCTACAACTCCCTCTCCGTCTACCACAACGGCCTGCTCA AGCAGGGGCTCGCCGGCGTCCAGGCCAAGTACCAGGCCGTCCGCCTCATGTACGGCAACT TCTACGACCAGGTCACCCAGATGGTTCAGTCTCCCGGGAGTTTCGGGCTACAATATGGCC TGAAAGTGTGCTGCGGCGCCGGTGGGCAAGGCTCCTACAACTACAATAACAAGGCGAGGT GTGGCATGTCAGGGGCAAGTGCCTGTGGAGACCCGGAGAATTACTTGGTCTGGGATGGCA TTCACCTCACCGAGGCTGCCTACCGTTCGATCGCGGATGGATGGCTCAGCGGGCCATACT GTAGCCCAGCTATTCTGCACTGAGCTGCAGCCTGCAGCTGGGCTATTTTCATGTTCGTAA TAAATTAATACTACTGTATCACAGTATATGTTGTTATATATGGCAGGGGATACTCTGGAA AATAATGCTAGGGTCTAGGGAAATGGAATGGAAATATGGGAGCCACTGGTGGTTTGAATC TCATTACATGATTACTCATGTATGCATTTTCGAGCACTGCCAATGTATTTTTACTCCAAA ATTCAATACATTTCCAC



consensusID : consensus_12140#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 805
fasta sequence
                              [AGNCCTATTCACACCTCCAAGGAGCAAGGCACAAGGTTACAGACGTGTCACGTGCGCGCGCGCATCTCTCTGTCACGCACGCAACGTACTCACTTACGTGCTCAGCCATGGCGGCCAACAAGGCCGTCGTCGTCGTCGCCGCCGTCCTCCTCCTCCTCGCCGTCGTCGCCCGGCGAGCGTCGTCGCAGAGCTACAACGCGATATACAACTTCGGCGACTCCATCACCGACACCGGCAACCTCTGCACCGGCGGCTGCCCGTCGTGGCTCACCACCGGCCAGCCTCCCTACGGCAACACCTTCTTCGGCCGCCCCACCGGCCGCTGCACCAACGGCCGCGTCATCATCGACTTCCTAGCTGATCGCTTCGGATTGCCGCTGCTCCCGCCGTCGAAGG-GAGCGGCGGCGACTTCAAGAAGGGCGCGAACATGGCCATCATCGGCGCCACCACCATGAACTTCGACTTCTTCCAGTCGCTCGGGTTGGGCAACAGCATCTGGAACAACGGCCCTCTGGACACCCAAATCCAGTGGTTCCAGCAGCTCTTGCCCTCCATCTGCGGCAACGATTGCAAGAGCTACCTGAGCAAGTCGCTGTTCATCGTGGGCGAGTTCGGGGGCAACGACTACAACGCCCCTCTCTTCGGCGGCAAGAGCATGGACGAGGTGAAAGGCTACGTGCCTCAGATCATCGCCAAGATCACAAGCGGCGTAGATACGCTGATCGGGCTGGGAGCGGTGGACATCGTGGTGCCGGGGGTGATGCCGATCGGGTGCTTCCCGCTGTACCTGACGCTGTACCAGAGC]

[+] EMBL AU067971             [AGNCCTATTCACACCTCCAAGGAGCAAGGCACAAGGTTACAGACGTGTCACGTGCGCGCGCGCATCTCTCTGTCACGCACGCAACGTACTCACTTACGTGCTCAGCCATGGCGGCCAACAAGGCCGTCGTCGTCGTCGCCGCCGTCCTCCTCCTCCTCGCCGTCGTCGCCCGGCGAGCGTCGTCGCAGAGCTACAACGCGATATACAACTTCGGCGACTCCATCACCGACACCGGCAACCTCTGCACCGGCGGCTGCCCGTCGTGGCTCACCACCGGCCAGCCTCCCTACGGCAACACCTTCTTCGGCCGCCCCACCGGCCGCTGCACCAACGGCCGCGTCATCATCGACTTCCTAGCTGATCGCTTCGGATTGCCGCTGCTCCC                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OSC347               [      ATTCACACCTCCAAGGAGCAAGGCACAAGGTTACAGACGTGTCACGTGCGCGCGCGCATCTTTCTGTCACGCACGCAACGTACTCACTTACGTGCTCAGCCATGGCGGCCAACAAGGCCGTCGTCGTCGTCGCCGCCGTCCTCCTCCTCCTCGCCGTCGTCGCCCGGCGAGCGTCGTCGCAGAGCTACAACGCGATATACAACTTCGGCGACTCCATCACCGACACCGGCAACCTCTGCACCGGCGGCTGCCCGTNGTGGCTCACCACCGGCCAGCNTNCCTACGGCAACAACTTCTTCGGCCGGCCCAACGGCCGCTGCACCAACGGCCGCGTCATCATCGACTTCCTAGCTGATtcgt                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OSC6131              [               TCCAAGGAGCAAGGCACAAGGTTACAGACGTGTCACGTGCGCGCGCGCATCTCTCTGTCACGCACGCAACGTACTCACTTACGTGCTCAGCCATGGCGGCCAACAAGGCCGTCGTCGTCGTCGCCGCCGTCCTCCTCCTCCTCGCCGTCGTCGCCCGGCGAGCGTCGTCGCAGAGCTACAACGCGATATACAACTTCGGCGACTCCATCACCGACACCGGCAACCTCTGCACCGGCGGCTGCCCGTCGTGGCTCACCACCGGCCAGCCTCCCTACGGCAACACCTTCTTCGGCCGCCCCACCGGCCGCTGCACCAACGGCCGCGTCATCATCGACTTCCTAGCTGATCGCTTCGGATTGCCGCTGCTCCCGCCGTCGAAGG GAGCGGCGGCGACTTCAAGAAGGGCGCG                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB672804             [                    GGAGCAAGGCACAAGGTTACAGACGTGTCACGTGCGCGCGCGCATCTCTCTGTCACGCACGCAACGTACTCACTTACGTGCTCAGCCATGGCGGCCAACAAGGCCGTCGTCGTCGTCGCCGCCGTCCTCCTCCTCCTCGCCGTCGTCGCCCGGCGAGCGTCGTCGCAGAGCTACAACGCGATATACAACTTCGGCGACTCCATCACCGACACCGGCAACCTCTGCACCGGCGGCTGCCCGTCGTGGCTCACCACCGGCCAGCCTCCCTACGGCAACACCTTCTTCGGCCGCCCCACCGGCCGCTGCACCAACGGCCGCGTCATCATCGACTTCCTAGCTGATCGCTTCGGATTGCCGCTGCTCCCGCCGTCGAAGGCGAGCGGCGGCGACTTCAAGAAGGGCGCGAACATGGCCATCATCGGCGCCACCACCATGAACTTCGACTTCTTCCAGTCGCTCGGGTTGGGCAACAGCATCTGGAACAACGGCCCTCTGGACACCCAAATCCAGTGGTTCCAGCAGCTCTTGCCCTCCATCTGCGGCAACGATTGCAAGAGCTACCTGAGCAAGTCGCTGTTCATCGTGGGCGAGTTCGGGGGCAACGACTACAACGCCCCTCTCTTCGGCGGCAAGAGCATGGACGAGGTGAAAGGCTACGTGCCTCAGATCATCGCCAAGATCACAAGCGGCGTAGATACGCTGATCGGGCTGGGAGCGGTGGACATCGTGGTGCCGGGGGTGATGCCGATCGGGTGCTTCCCGCTGTACCTGACGCTGTACCAGAGC]


>consensus_12140#2 AGNCCTATTCACACCTCCAAGGAGCAAGGCACAAGGTTACAGACGTGTCACGTGCGCGCG CGCATCTCTCTGTCACGCACGCAACGTACTCACTTACGTGCTCAGCCATGGCGGCCAACA AGGCCGTCGTCGTCGTCGCCGCCGTCCTCCTCCTCCTCGCCGTCGTCGCCCGGCGAGCGT CGTCGCAGAGCTACAACGCGATATACAACTTCGGCGACTCCATCACCGACACCGGCAACC TCTGCACCGGCGGCTGCCCGTCGTGGCTCACCACCGGCCAGCCTCCCTACGGCAACACCT TCTTCGGCCGCCCCACCGGCCGCTGCACCAACGGCCGCGTCATCATCGACTTCCTAGCTG ATCGCTTCGGATTGCCGCTGCTCCCGCCGTCGAAGGGAGCGGCGGCGACTTCAAGAAGGG CGCGAACATGGCCATCATCGGCGCCACCACCATGAACTTCGACTTCTTCCAGTCGCTCGG GTTGGGCAACAGCATCTGGAACAACGGCCCTCTGGACACCCAAATCCAGTGGTTCCAGCA GCTCTTGCCCTCCATCTGCGGCAACGATTGCAAGAGCTACCTGAGCAAGTCGCTGTTCAT CGTGGGCGAGTTCGGGGGCAACGACTACAACGCCCCTCTCTTCGGCGGCAAGAGCATGGA CGAGGTGAAAGGCTACGTGCCTCAGATCATCGCCAAGATCACAAGCGGCGTAGATACGCT GATCGGGCTGGGAGCGGTGGACATCGTGGTGCCGGGGGTGATGCCGATCGGGTGCTTCCC GCTGTACCTGACGCTGTACCAGAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12140#1      ------------------------------------------------------------
consensus_12140#2      ------------------------------------------------------------
consensus_12140#0      ACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCT 60
                                                                                   

consensus_12140#1      ------------------------------------------------------------
consensus_12140#2      ------------------------------------------------------------
consensus_12140#0      AGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGC 120
                                                                                   

consensus_12140#1      ------------------------------------------------------------
consensus_12140#2      ------------------------------------------------------------
consensus_12140#0      GACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACC 180
                                                                                   

consensus_12140#1      ------------------------------------------------------------
consensus_12140#2      ------------------------------------------------------------
consensus_12140#0      AAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGATTAGACCGTCGTGAGA 240
                                                                                   

consensus_12140#1      ------------------------------------------------------CAACCG 6
consensus_12140#2      -----------------------------------------------------------A 1
consensus_12140#0      CAGGTTAGTTTTACCCTACTGATGACCGTGCCGCGATAGTAATTCAACCTAGTACGAGAG 300
                                                                                   

consensus_12140#1      AGCCTATTCACACCTCCAAGGAG-CAAGGCACAAGGTTACAGAC---GTGTCACGT-GCG 61
consensus_12140#2      GNCCTATTCACACCTCCAAGGAG-CAAGGCACAAGGTTACAGAC---GTGTCACGT-GCG 56
consensus_12140#0      GAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCT 360
                          *  ** *  *   ***   * **  ** *  ****  * *    *** * **  ** 

consensus_12140#1      CGCGCGCATCTCTCTGTCAC-GCACGCAACGTACTCA----CTTACGTGCTCAGCCATGG 116
consensus_12140#2      CGCGCGCATCTCTCTGTCAC-GCACGCAACGTACTCA----CTTACGTGCTCAGCCATGG 111
consensus_12140#0      ACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTAGCAAGCGGCGC 420
                         ** *   *    * * ** * ****  *  * ***    *  *  *    ***   * 

consensus_12140#1      CGGCCAACAAGGCCGTCGTCGTTCGTCGCCGCCGTCCTCCTCCTCCTCGCCGTCGTCGC- 175
consensus_12140#2      CGGCCAACAAGGCCGTCGTCGT-CGTCGCCGCCGTCCTCCTCCTCCTCGCCGTCGTCGC- 169
consensus_12140#0      CTGCGCCCGCCGCCCGCCCCGACCCACGTTAGGGGCGCAAGCCCCCAAGGGCCCGTGCCA 480
                       * **   *   ***  *  **  *  **     * *     ** **  *    ***  * 

consensus_12140#1      CCGGCGAGCGTCGTCGCAGAGCTACAACGCGATATACAACTTCGGCGACTCCATCACCGA 235
consensus_12140#2      CCGGCGAGCGTCGTCGCAGAGCTACAACGCGATATACAACTTCGGCGACTCCATCACCGA 229
consensus_12140#0      CCGGCGAGCGTCGTCGCAGAGCTACAACGCGATATACAACTTCGGCGACTCCATCACCGA 540
                       ************************************************************

consensus_12140#1      CACCGGCAACCTCTGCACCGGCGGCTGCCCGTCGTGGCTCACCACCGGCCAGCCTCCCTA 295
consensus_12140#2      CACCGGCAACCTCTGCACCGGCGGCTGCCCGTCGTGGCTCACCACCGGCCAGCCTCCCTA 289
consensus_12140#0      CACCGGCAACCTCTGCACCGGCGGCTGCCCGTCGTGGCTCACCACCGGCCAGCCTCCCTA 600
                       ************************************************************

consensus_12140#1      CGGCAACACCTTCTTCGGCAGCCCCACCGGCCGCTGCACCAACGGCCGCGTCATCATCGA 355
consensus_12140#2      CGGCAACACCTTCTTCGGCCGCCCCACCGGCCGCTGCACCAACGGCCGCGTCATCATCGA 349
consensus_12140#0      CGGCAACACCTTCTTCGGCCGCCCCACCGGCCGCTGCACCAACGGCCGCGTCATCATCGA 660
                       ******************* ****************************************

consensus_12140#1      CTTCCTAGCTGATCGCTTCGGATTGCCGCTGCTCCCGCCGTCGAAGGCGAGCGGCGGCGA 415
consensus_12140#2      CTTCCTAGCTGATCGCTTCGGATTGCCGCTGCTCCCGCCGTCGAAGG-GAGCGGCGGCGA 408
consensus_12140#0      CTTCCTAGCTGATCGCTTCGGATTGCCGCTGCTCCCGCCGTCGAAGGCGAGCGGCGGCGA 720
                       *********************************************** ************

consensus_12140#1      CTTCAAGAAGGGCGCGAACATGGCCATCATCGGCGCCACCACCATGAACTTCGACTTCTT 475
consensus_12140#2      CTTCAAGAAGGGCGCGAACATGGCCATCATCGGCGCCACCACCATGAACTTCGACTTCTT 468
consensus_12140#0      CTTCAAGAAGGGCGCGAACATGGCCATCATCGGCGCCACCACCATGAACTTCGACTTCTT 780
                       ************************************************************

consensus_12140#1      CCAGTCGCTCGGGTTGGGCAACAGCATCTGGAACAACGGCCCTCTGGACACCCAAATCCA 535
consensus_12140#2      CCAGTCGCTCGGGTTGGGCAACAGCATCTGGAACAACGGCCCTCTGGACACCCAAATCCA 528
consensus_12140#0      CCAGTCGCTCGGGTTGGGCAACAGCATCTGGAACAACGGCCCTCTGGACACCCAAATCCA 840
                       ************************************************************

consensus_12140#1      GTGGTTCCAGCAGCTCTTGCCCTCCATCTGCGGCAACGATTGCAAGAGCTACCTGAGCAA 595
consensus_12140#2      GTGGTTCCAGCAGCTCTTGCCCTCCATCTGCGGCAACGATTGCAAGAGCTACCTGAGCAA 588
consensus_12140#0      GTGGTTCCAGCAGCTCTTGCCCTCCATCTGCGGCAACGATTGCAAGAGCTACCTGAGCAA 900
                       ************************************************************

consensus_12140#1      GTCGCTGTTCATCGTGGGCGAGTTCGGGGGCAACGACTACAACGCCCCTCTCTTCGGCGG 655
consensus_12140#2      GTCGCTGTTCATCGTGGGCGAGTTCGGGGGCAACGACTACAACGCCCCTCTCTTCGGCGG 648
consensus_12140#0      GTCGCTGTTCATCGTGGGCGAGTTCGGGGGCAACGACTACAACGCCCCTCTCTTCGGCGG 960
                       ************************************************************

consensus_12140#1      CAAGAGCATGGACGAG-------------------------------------------- 671
consensus_12140#2      CAAGAGCATGGACGAGGTGAAAGGCTACGTGCCTCAGATCATCGCCAAGATCACAAGCGG 708
consensus_12140#0      CAAGAGCATGGACGAGGTGAAAGGCTACGTGCCTCAGATCATCGCCAAGATCACAAGCGG 1020
                       ****************                                            

consensus_12140#1      -------ACGCTGATCGGGCTGGGAGCGGTGGACATCGTGGTGCCGGGGGTGATGCCGAT 724
consensus_12140#2      CGTAGATACGCTGATCGGGCTGGGAGCGGTGGACATCGTGGTGCCGGGGGTGATGCCGAT 768
consensus_12140#0      CGTAGATACGCTGATCGGGCTGGGAGCGGTGGACATCGTGGTGCCGGGGGTGATGCCGAT 1080
                              *****************************************************

consensus_12140#1      CGGGTGCTTCCCGCTGTACCTGACGCTGTACCAGAGCTCCAACTCCGACGACTACGACGG 784
consensus_12140#2      CGGGTGCTTCCCGCTGTACCTGACGCTGTACCAGAGC----------------------- 805
consensus_12140#0      CGGGTGCTTCCCGCTGTACCTGACGCTGTACCAGAGCTCCAACTCCGACGACTACGACGG 1140
                       *************************************                       

consensus_12140#1      CAATGGCTGCCTCAAGAGCTACAACTCCCTCTCCGTCTACCACAACGGCCTGCTCAAGCA 844
consensus_12140#2      ------------------------------------------------------------
consensus_12140#0      CAATGGCTGCCTCAAGAGCTACAACTCCCTCTCCGTCTACCACAACGGCCTGCTCAAGCA 1200
                                                                                   

consensus_12140#1      GGGGCTCGCCGGCGTCCAGGCCAAGTACCAGGCCGTCCGCCTCATGTACGGCAACTTCTA 904
consensus_12140#2      ------------------------------------------------------------
consensus_12140#0      GGGGCTCGCCGGCGTCCAGGCCAAGTACCCGGCCGTCCGCCTCATGTACGGCAACTTCTA 1260
                                                                                   

consensus_12140#1      CGACCAGGTCACCCAGATGGTTCAGTCTCCCGGGAGTTTCGGGCTACAATATGGCCTGAA 964
consensus_12140#2      ------------------------------------------------------------
consensus_12140#0      CGACCAGGTCACCCAGATGGTTCAGTCTCCCGGGAGTTTCGGGCTACAATATGGCCTGAA 1320
                                                                                   

consensus_12140#1      AGTGTGCTGCGGCGCCGGTGGGCAAGGCTCCTACAACTACAATAACAAGGCGAGGTGTGG 1024
consensus_12140#2      ------------------------------------------------------------
consensus_12140#0      AGTGTGCTGCGGCGCCGGTGGGCAAGGCTCCTACAACTACAATAACAAGGCGAGGTGTGG 1380
                                                                                   

consensus_12140#1      CATGTCAGGGGCAAGTGCCTGTGGAGACCCGGAGAATTACTTGGTCTGGGATGGCATTCA 1084
consensus_12140#2      ------------------------------------------------------------
consensus_12140#0      CATGTCAGGGGCAAGTGCCTGTGGAGACCCGGAGAATTACTTGGTCTGGGATGGCATTCA 1440
                                                                                   

consensus_12140#1      CCTCACCGAGGCTGCCTACCGTTCGATCGCGGATGGATGGCTCAGCGGGCCATACTGTAG 1144
consensus_12140#2      ------------------------------------------------------------
consensus_12140#0      CCTCACCGAGGCTGCCTACCGTTCGATCGCGGATGGATGGCTCAGCGGGCCATACTGTAG 1500
                                                                                   

consensus_12140#1      CCCAGCTATTCTGCACTGAGCTGCAGCCTGCAGCTGGGCTATTTTCATGTTCGTAATAAA 1204
consensus_12140#2      ------------------------------------------------------------
consensus_12140#0      CCCAGCTATTCTGCACTGAGCTGCAGCCTGCAGCTGGGCTATTTTCATGTTCGTAATAAA 1560
                                                                                   

consensus_12140#1      TTAATACTACTGTATCACAGTATATGTTGTTATATATGGCAGGGGATACTCTGGAAAATA 1264
consensus_12140#2      ------------------------------------------------------------
consensus_12140#0      TTAATACTACTGTATCACAGTATATGTTGTTATATATGGCAGGGGATACTCTGGAAAATA 1620
                                                                                   

consensus_12140#1      ATGCTAGGGTCTAGGGAAATGGAATGGAAATATGGGAGCCACTGGTGGTTTGAATCTCAT 1324
consensus_12140#2      ------------------------------------------------------------
consensus_12140#0      ATGCTAGGGTCTAGGGAAATGGAATGGAAATATGGGAGCCACTGGTGGTTTGAATCTCAT 1680
                                                                                   

consensus_12140#1      TACATGATTACTCATGTATGCATTTTCGAGCACTGCCAATGTATTTTTACTCCAAAATTC 1384
consensus_12140#2      ------------------------------------------------------------
consensus_12140#0      TACATGATTACTCATGTATGCATTTTCGAGCACTGCCAATGTATTTTTACTCCAAAATTC 1740
                                                                                   

consensus_12140#1      AATACATTTCCAC---------------------------------------------- 1397
consensus_12140#2      -----------------------------------------------------------
consensus_12140#0      AATACATTTCCACTNATGTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1799
                                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)