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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12158#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1136 fasta sequence
[TTTTTTAAGTGCAGGTAGCTGCTAATTAATTAAACAACATGCAATGCAAGAGAAGAAGAAGACAGGCTTTCGCTCGCTCGCATCTTTGATAGCTACTTGCACACGCCGCAGCAGCCTCTTTAAAAGCACAGCTAAGCGCA-NTCGCTCCGACCAAAAGGCCAACTCAGTTTACAGCGACATCCGACATAGCCTAGCTTAAGCTTCATCCATTGATCGATCACTCTCACACAGCTAGCTGCACGTAAGCTAGCTAGGAGTTAGCTAGCCATGGTTCGGAAGCTTGTTGCCTCTCTCTTCCTCGGCGGCGGCGGCGGCGGCGGCGGCGGCAATGATGCCTGTAGCCTGTCGTCG-TCGTCGAGCACGGCGTCGTCGTGGCAATGGCCTTCGTGCACGCAGGCGAGG-ACGCTCTCCTTCGCCAGGCACGACGCCCCAGCAAGCGCAGACGACGACGACAGCAAGCGGCGGCGGCAGCAGGAGGAGGAGGAAGACGACTACTGCGTCTACAAGACGAGCGTGATGAACCCGGCCTTCTTCCTCGACGACCACTCCACCTGCCGCTCCTACTCCTCCGCCGCCTCCGCCGTCAACGACGTCGTCGACGACGACGACGAGGTGATCATCCGCGGGGTCCGGTCGTCGAACCGCCGCCTCTTCTTCGAGNCCGAGTCGACGAAGTCCATCGTCGTCAAGGGACGCGCCGTCGACGCCGACGCGGCGGCGTTCGACGGGGCGACGGCGATGTCCATCGACTCGGCCGACCCGTACGGAGACTTCCGGCGGTCGATGGAGGAGATGGTGATG-AGCCACATGAGTGGCGGGGGCCATGACTGGGGGTGGCTGGAGGAGATGCTCGGCTGGTACCTGAGGGCCAACGGCAAGAAGACCCATGGCTTCATCGTCGGAGCATTCGTCGACTTGGTCGTGGNGCTCGCGTCTTCTCCTTCCTCCGCCACCGCCTCCTCCTCCGCCTTCCAGCTGCCTCTCCAGAAAGGCAGCCAGATTAACTAAGCTAAGGCTATAGCTCATCCATGAGCACAATAATTACTACTGTATTAGCTAGCTAGGTAGAGCAATTAAGCGAGAGACTACGTTTGATTGATTGATCTTGGAAGCATGCATAATGTATGCCATGGCCA]
[-] EMBL AU108417 [TTTTTTAAGTGCAGGTAGCTGCTAATTAATTAAACAACATGCAATGCAAGAGAAGAAGAAGACAGGCTTTCGCTCGCTCGCATCTTTGATAGCTACTTGCACACGCCGCAGCAGCCTCTTTAAAAGCACAGCTAAGCGCA NTCGCTCCGACCAAAAGGCCAACTCAGTTTACAGCGACATCCGACATAGCCTAGCTTAAGCTTCATCCATTGATCGATCACTCTCACACAGCNAGCTGCACGNAAGCTAGCTAGGAGTTAGCTAGCCATGGTTCGGAAGCTTGTTGCCTCTCTCTTCCTCGGCGGCGGCGGCGGCGGCGGCGGCGGCAATGATGCCTGTAGCCTGTCGTCG TCGTCGAGCACGGCG ]
[-] EMBL AU097651 [TTTTTTAAGTGCAGGTAGCTGCTAATTAATTAAACAACATGCAATGCAAGAGAAGAAGAAGACAGGCTTTCGCTCGCTCGCATCTTTGATAGCTACTTGCACACGCCGCAGCAGCCTCTTTAAAAGCACAGCTAAGCGCA NTCGCTCCGACCAAAAGGCCAACTCAGTTTACAGCGACATCCGACATAGCCTAGCTTAAGCTTCATCCATTGATCGATCACTCTCACACAGCTAGCTGCACGTAAGCTAGCTAGGAGTTAGCTAGCCATGGTTCGGAAGCTTGTTGCCTCTCTCTTCCTCGGCGGCGGCGGCGGCGGCGGCGGCGGCAATGATGCCTGTAGCNTGTCGTCG TCGTCGAGCACGGCGTCGTCGTGGCAATGGCCTTCGTGCACGCAGGCGAGG ACGCTCTCCTTCGCCAGGCACGACGCCCCAGCAAGCGCAGACGACGACGACAGCAAGCGGCGGCGGCAGCAGGAGGAGGAGGAAGACGACTACTGCGTCTACAAGACGAGCGTGATGAACCCGGCCTTCTTCCTCGACGACCACTCCACCTGCCGCTCCTACTCCTCCGCCGCCTCCGCCGTCAACGACGTCGTCGACGACGACGACGAGGTGATCATCCGCGGGGTCCGGTCGTCGAACCGCCGCCTCTTCTTCGAGNCCGAGTCGACGAAGTCCATCGTCGTCAAG ]
[-] EMBL AU101961 [TTTTTTAAGTGCAGGTAGCTGCTAATTAATTAAACAACATGCAATGCAAGAGAAGAAGAAGACAGGCTTTCGCTCGCTCGCATCTTTGATAGCTACTTGCACACGCCGCAGCAGCCTCTTTAAAAGCACAGCTAAGCGCA CTCGCTCCGACCAAAAGGCCAACTCAGTTTACAGCGACATCCGACATAGCCTAGCTTAAGCTTCATCCATTGATCGATCACTCTCACACAGCTAGCTGCACGTAAGCTAGCTAGGAGTTAGCTAGCCATGGTTCGGAAGCTTGTTGCCTCTCTCTTCCTCGGCGGCGGCGGCGGCGGCGGCGGCGGCAATGATGCCTGTAGCNTGTCGTCGTTCGTCGAGCACGGCGTCGTCGTGGCAATGGGCTTCGTGCACGCAGGCGAGGAACG TTTTCTTCGCCAGGNACGAAGGCC ]
[-] EMBL AU223028 [TTTTTTAAGTGCAGGTAGCTGCTAATTAATTAAACAACATGCAATGCAAGAGAAGAAGAAGACAGGCTTTCGCTCGCTCGCATCTTTGATAGCTACTTGCACACGCCGCAGCAGCCTCTTTAAAAGCACAGCTAAGCGCAGCTCGCTCCGACCAAAAGGCCAACTCAGTTTACAGCGACATCCGACATAGCCTAGCTTAAGCTTCATCCATTGATCGATCACTCTCACACAGCTAGCTGCACGTAAGCTAGCTAGGAGTTAGCTAGCCATGGTTCGGAAGCTTGTTGCCTCTCTCTTCCTCGGCGGCGGCGGCGGCGGCGGCGGCGGCAATGATGCCTGTAGCCTGTCGTCG TCGTCGAGCACGGCGTCGTCGTGGCAATGGCCTTCGTGCACGCAGGCGAGG ACGCTCTCCTTCGCCAGGCACGACGCC ]
[+] EMBL AK109189 [ CAACTCAGTTTACAGCGACATCCGACATAGCCTAGCTTAAGCTTCATCCATTGATCGATCACTCTCACACAGCTAGCTGCACGTAAGCTAGCTAGGAGTTAGCTAGCCATGGTTCGGAAGCTTGTTGCCTCTCTCTTCCTCGGCGGCGGCGGCGGCGGCGGCGGCGGCAATGATGCCTGTAGCCTGTCGTCG TCGTCGAGCACGGCGTCGTCGTGGCAATGGCCTTCGTGCACGCAGGCGAGG ACGCTCTCCTTCGCCAGGCACGACGCCCCAGCAAGCGCAGACGACGACGACAGCAAGCGGCGGCGGCAGCAGGAGGAGGAGGAAGACGACTACTGCGTCTACAAGACGAGCGTGATGAACCCGGCCTTCTTCCTCGACGACCACTCCACCTGCCGCTCCTACTCCTCCGCCGCCTCCGCCGTCAACGACGTCGTCGACGACGACGACGAGGTGATCATCCGCGGGCTCCGGTCGTCGAACCGCCGCCTCTTCTTCGAGCCCGAGTCGACGAGCTCCATCGTCGTCAAGGGACGCGCCGTCGACGCCGACGCGGCGGCGTTCGACGGGGCGACGGCGATGTCCATCGACTCGGCCGACCCGTACGGAGACTTCCGGCGGTCGATGGAGGAGATGGTGATG AGCCACATGAGTGGCGGGGGCCATGACTGGGGGTGGCTGGAGGAGATGCTCGGCTGGTACCTGAGGGCCAACGGCAAGAAGACCCATGGCTTCATCGTCGGAGCATTCGTCGACTTGGTCGTGGCGCTCGCGTCTTCTCCTTCCTCCGCCACCGCCTCCTCCTCCGCCTTCCAGCTGCCTCTCCAGAAAGGCAGCCAGATTAACTAAGCTAAGGCTATAGCTCATCCATGAGCACAATAATTACTACTGTATTAGCTAGCTAGGTAGAGCAATTAAGCGAGAGACTACGTTTGATTGATTGATCTTGGAAGCATGCATAATGTATGCCATGGCCA]
[-] EMBL OSS3001A [ CGGTCGATGGAGGAGATGGTGATG AGCCACATGAGTGGCGGGGGCCATGACTGGGGGTGGCTGGAGGAGATGCTCGGCTGGTACCTGAGGGCCAACGGCAAGAAGACCCATGGCTTCATCGTCGGAGCATTCGTCGACTTGGTCGTGGNGCTCGCGTCTTCTCCTTCCTCCGCCACCGCCTCCTCCTCCGCCTTCCAGCTGCCTCTCCAGAAAGGCAGCCAGATTAACTAAGCTAAGG ]
[-] EMBL OSS3019A [ GTCGATGGAGGAGATGGTGATGAAGCCACATGAGTGGCGGGGGCCATGACTGGGGGTGGCTGGAGGAGATGCTCGGCTGGTACCTGAGGGCCAACGGCAAGAAGACCCATGGCTTCATCGTCGGAGCATTCGTCGACTTGGTCGTGGNGCTCGCGTCTTCTCCTTCCTCCGCCACCGCCTCCTCCTCCGCCTTCCAGCTGCCTCTCCAGAAAGGCAGCCAGATTAACTAAGCTAAGG ]
[-] EMBL OSS3830A [ tnACTGGGGGTGGCTGGAGGAGATGCTCGGCTGGTACCTGAGGGCCAACGGCAAGAAGACCCATGGCTTCATCGTCGGAGCATTCGTCGACTTGGTCGTGGGGCTCGCGTCTTCTCCTTCCTCCGCCACCGCCTCCTCCTCCGCCTTCCAGCTGCCTCTCCANAAAGGCAGCCAGATTAACTAAGCTAAGG ]
consensusID : consensus_12158#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[CCGTCAACGACGTCGTCGACGACGACGACGAGGTGATCATCCGCGGGCTCCGGTCGTCGAACCGCCGCCTCTTCTTCGAGCCCGAGTCGACGAGCTCCATCGTCGTCAAGGGACGCGCCGTCGACGGCGATGTCCATCGACTCGGCCGACCCGTACGGAGACTTCCGGCGGTCGATGGAGGAGATGGTGATGAGCCACATGAGTGGCGGGGGCCATGACTGGGGGTGGCTGGAGGAGATGCTCGGCTGGTACCTGAGGGCCAACGGCAAGAAGACCCATGGCTTCATCGTCGNAGCATTNGTCNACTTGGTCGTGGCGGCTCGGCGTCTTCTCCTTCCTCCNCCNCCGCCTCCTCCTCCAGCCTTCCAGNCTGCCTCTCCAGAAAGGCANCCAGATTACCTAAGCTAAGG]
[-] EMBL AU223023 [CCGTCAACGACGTCGTCGACGACGACGACGAGGTGATCATCCGCGGGCTCCGGTCGTCGAACCGCCGCCTCTTCTTCGAGCCCGAGTCGACGAGCTCCATCGTCGTCAAGGGACGCGCCGTCGACGGCGATGTCCATCGACTCGGCCGACCCGTACGGAGACTTCCGGCGGTCGATGGAGGAGATGGTGATGAGCCACATGAGTGGCGGGGGCCATGACTGGGGGTGGCTGGAGGAGATGCTCGGCTGGTACCTGAGGGCCAACGGCAAGAAGACCCATGGCTTCATCGTCGNAGCATTNGTCNACTTGGTCGTGGCGGCTCGGCGTCTTCTCCTTCCTCCNCCNCCGCCTCCTCCTCCAGCCTTCCAGNCTGCCTCTCCAGAAAGGCANCCAGATTACCTAAGCTAAGG]
consensusID : consensus_12158#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence
[AGCTCCGAAGTCNTACGAGCTCNATCGTCGTCAAGGAACGCGCCGTCNACGGCGATGTCNATCGACTCGGCCGACCCGTACGGAGACTTCCGGCGGTCGATGGAGGAGATGGTGATGAGCCANATGAGTGNCGGGGGCNATGACTGGGGGTGGCTGGAGGAGATGCTCGGNTGGTACCTGAGGGCCANCGGCAAGAAGACCNATGGCTTCATCGTCGGNGCATTCGTCGACTTGGTCGTGGCGCTCGCGTCTTCTCCTTCCTCCGCCANCGCCTCCTCCTCCGCCTTCCAGCTGCNTCTCNAGAAAGNCANCCAGATTAACTAAGCTAAGG]
[-] EMBL AU066099 [AGCTCCGAAGTCNTACGAGCTCNATCGTCGTCAAGGAACGCGCCGTCNACGGCGATGTCNATCGACTCGGCCGACCCGTACGGAGACTTCCGGCGGTCGATGGAGGAGATGGTGATGAGCCANATGAGTGNCGGGGGCNATGACTGGGGGTGGCTGGAGGAGATGCTCGGNTGGTACCTGAGGGCCANCGGCAAGAAGACCNATGGCTTCATCGTCGGNGCATTCGTCGACTTGGTCGTGGCGCTCGCGTCTTCTCCTTCCTCCGCCANCGCCTCCTCCTCCGCCTTCCAGCTGCNTCTCNAGAAAGNCANCCAGATTAACTAAGCTAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12158#0 TTTTTTAAGTGCAGGTAGCTGCTAATTAATTAAACAACATGCAATGCAAGAGAAGAAGAA 60
consensus_12158#1 ------------------------------------------------------------
consensus_12158#2 ------------------------------------------------------------
consensus_12158#0 GACAGGCTTTCGCTCGCTCGCATCTTTGATAGCTACTTGCACACGCCGCAGCAGCCTCTT 120
consensus_12158#1 ------------------------------------------------------------
consensus_12158#2 ------------------------------------------------------------
consensus_12158#0 TAAAAGCACAGCTAAGCGCANTCGCTCCGACCAAAAGGCCAACTCAGTTTACAGCGACAT 180
consensus_12158#1 ------------------------------------------------------------
consensus_12158#2 ------------------------------------------------------------
consensus_12158#0 CCGACATAGCCTAGCTTAAGCTTCATCCATTGATCGATCACTCTCACACAGCTAGCTGCA 240
consensus_12158#1 ------------------------------------------------------------
consensus_12158#2 ------------------------------------------------------------
consensus_12158#0 CGTAAGCTAGCTAGGAGTTAGCTAGCCATGGTTCGGAAGCTTGTTGCCTCTCTCTTCCTC 300
consensus_12158#1 ------------------------------------------------------------
consensus_12158#2 ------------------------------------------------------------
consensus_12158#0 GGCGGCGGCGGCGGCGGCGGCGGCGGCAATGATGCCTGTAGCCTGTCGTCGTCGTCGAGC 360
consensus_12158#1 ------------------------------------------------------------
consensus_12158#2 ------------------------------------------------------------
consensus_12158#0 ACGGCGTCGTCGTGGCAATGGCCTTCGTGCACGCAGGCGAGGACGCTCTCCTTCGCCAGG 420
consensus_12158#1 ------------------------------------------------------------
consensus_12158#2 ------------------------------------------------------------
consensus_12158#0 CACGACGCCCCAGCAAGCGCAGACGACGACGACAGCAAGCGGCGGCGGCAGCAGGAGGAG 480
consensus_12158#1 ------------------------------------------------------------
consensus_12158#2 ------------------------------------------------------------
consensus_12158#0 GAGGAAGACGACTACTGCGTCTACAAGACGAGCGTGATGAACCCGGCCTTCTTCCTCGAC 540
consensus_12158#1 ------------------------------------------------------------
consensus_12158#2 ------------------------------------------------------------
consensus_12158#0 GACCACTCCACCTGCCGCTCCTACTCCTCCGCCGCCTCCGCCGTCAACGACGTCGTCGAC 600
consensus_12158#1 ----------------------------------------CCGTCAACGACGTCGTCGAC 20
consensus_12158#2 ------------------------------------------------------------
consensus_12158#0 GACGACGACGAGGTGATCATCCGCGGGGTCCGGTCGTCGAACCGCCGCCTCTTCTTCGAG 660
consensus_12158#1 GACGACGACGAGGTGATCATCCGCGGGCTCCGGTCGTCGAACCGCCGCCTCTTCTTCGAG 80
consensus_12158#2 --------------------------------------------------------AGCT 4
*
consensus_12158#0 NCCGAGTCG-ACGAAGTCCATCGTCGTCAAGGGACGCGCCGTCGACGCCGACGCGGCGGC 719
consensus_12158#1 CCCGAGTCG-ACGAGCTCCATCGTCGTCAAGGGACGCGCCGTCGACG------------- 126
consensus_12158#2 CCGAAGTCNTACGAGCTCNATCGTCGTCAAGGAACGCGCCGTCNACG------------- 51
* **** **** ** ************* ********** ***
consensus_12158#0 GTTCGACGGGGCGACGGCGATGTCCATCGACTCGGCCGACCCGTACGGAGACTTCCGGCG 779
consensus_12158#1 ----------------GCGATGTCCATCGACTCGGCCGACCCGTACGGAGACTTCCGGCG 170
consensus_12158#2 ----------------GCGATGTCNATCGACTCGGCCGACCCGTACGGAGACTTCCGGCG 95
******** ***********************************
consensus_12158#0 GTCGATGGAGGAGATGGTGATGAGCCACATGAGTGGCGGGGGCCATGACTGGGGGTGGCT 839
consensus_12158#1 GTCGATGGAGGAGATGGTGATGAGCCACATGAGTGGCGGGGGCCATGACTGGGGGTGGCT 230
consensus_12158#2 GTCGATGGAGGAGATGGTGATGAGCCANATGAGTGNCGGGGGCNATGACTGGGGGTGGCT 155
*************************** ******* ******* ****************
consensus_12158#0 GGAGGAGATGCTCGGCTGGTACCTGAGGGCCAACGGCAAGAAGACCCATGGCTTCATCGT 899
consensus_12158#1 GGAGGAGATGCTCGGCTGGTACCTGAGGGCCAACGGCAAGAAGACCCATGGCTTCATCGT 290
consensus_12158#2 GGAGGAGATGCTCGGNTGGTACCTGAGGGCCANCGGCAAGAAGACCNATGGCTTCATCGT 215
*************** **************** ************* *************
consensus_12158#0 CGGAGCATTCGTCGACTTGGTCGTGGNG-CTCG-CGTCTTCTCCTTCCTCCGCCACCGCC 957
consensus_12158#1 CGNAGCATTNGTCNACTTGGTCGTGGCGGCTCGGCGTCTTCTCCTTCCTCCNCCNCCGCC 350
consensus_12158#2 CGGNGCATTCGTCGACTTGGTCGTGGCG-CTCG-CGTCTTCTCCTTCCTCCGCCANCGCC 273
** ***** *** ************ * **** ***************** ** ****
consensus_12158#0 TCCTCCTCC-GCCTTCCAGC-TGCCTCTCCAGAAAGGCAGCCAGATTAACTAAGCTAAGG 1015
consensus_12158#1 TCCTCCTCCAGCCTTCCAGNCTGCCTCTCCAGAAAGGCANCCAGATTACCTAAGCTAAGG 410
consensus_12158#2 TCCTCCTCC-GCCTTCCAGC-TGCNTCTCNAGAAAGNCANCCAGATTAACTAAGCTAAGG 331
********* ********* *** **** ****** ** ******** ***********
consensus_12158#0 CTATAGCTCATCCATGAGCACAATAATTACTACTGTATTAGCTAGCTAGGTAGAGCAATT 1075
consensus_12158#1 ------------------------------------------------------------
consensus_12158#2 ------------------------------------------------------------
consensus_12158#0 AAGCGAGAGACTACGTTTGATTGATTGATCTTGGAAGCATGCATAATGTATGCCATGGCC 1135
consensus_12158#1 ------------------------------------------------------------
consensus_12158#2 ------------------------------------------------------------
consensus_12158#0 A 1136
consensus_12158#1 -
consensus_12158#2 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||