These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 635 fasta sequence [TAATCTCTCGGTTTATTTCCATATATACAGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAACCGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATC-CCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCAC-GGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTCCCGCCGNGGGGGGGNNNNNAAAAAAAAAAAAAAACCNNAAGCCNAANCCCAAACCCCCCTCCCNCTTTNCCCCTTGTTGCCCNAACTTCANCNGTTAATTNTTTNTNTTTGGCACAACTAAGNTGCNNCCAATCCGCNCCGGGNTCNATNTAAGCNCCCGGGACCCCTTTTCCCTTNTAGGNTNATCACT] [+] EMBL BU672803 [TAATCTCTCGGTTTATTTCCATATATACAGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAACCGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATC CCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCAC GGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCT ] [+] EMBL BE229088 [ CTCGGTTTATTTCCATATATACAGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAACCGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGAC CCGCCGGCGCCGGCCTTTCTGCCC CCACCGGGGGGGGGGGCCTCCCCGCCGCTG CCCAACAC GGCCCTGAATGGCACCCTTGGCCACAGTAT CTTCCGTCCTGCCNCAGTA CCCCATTGGTTGCA CATTA CC NCCTGGCAACC CA TTCCCCCGCCGNGGGGGGGNNNNNAAAAAAAAAAAAAAACCNNAAGCCNAANCCCAAACCCCCCTCCCNCTTTNCCCCTTGTTGCCCNAACTTCANCNGTTAATTNTTTNTNTTTGGCACAACTAAGNTGCNNCCAATCCGCNCCGGGNTCNATNTAAGCNCCCGGGACCCCTTTTCCCTTNTAGGNTNATCACT] [-] EMBL CB966366 [ cggcacgagGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAACCGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCACCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACAGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGT ] [-] EMBL CB965672 [ CTGCCCGCCATC CCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCAC GGCCCTGACTGG A CCTT GCCACAG ATGCTTC GTCGTGCCACAGTACCCCCATT GCTGCAGCAGTAGCCGT CTGGCA CCGCAGTTCTGCCGCCGaagc ] consensusID : consensus_12161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 498 fasta sequence [TTTTTTTTTTTTTTTTTGACTTTATTTAATCTCTCGGTTTATTTCCATATATACAGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTAT-GCGCGCCG-GCCGTTTATTTATCCTTCGAAATTAAC-CGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACA-GTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGCAGCCGCAGTTCTGCGCAGCCC-AGC-TATTCCCTTAGTGAGGA] [-] EMBL CB964881 [TTTTTTTTTTTTTTTTTGACTTTATTTAATCTCTCGGTTTATTTCCATATATACAGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTAT GCGCGCCG GCCGTTTATTTATCCTTCGAAATTAAC CGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACA GTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGCAGCCGCAGTTCTGCGCAGCCC AGC TATTCCC ] [-] EMBL CB966617 [ ATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTATGGCGCGCCG GCCGTTTATTTATCCTTCGAAATTAAC CGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCACTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGGTACCCCCATTGGCTGCAGCAGTAGCCGTCTGGCAGCCGCAGTTCTGAG GCCCAAGCGTATCCCTTTAGTGAGGA] [-] EMBL CB966645 [ AAGCACTTAT GCGCGCCGNGCCGTTTATTTATCCTTCGAAATTAACNCGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGG CCTGACTGGCA CCTTGGCCACAGTATGCTTCGGTCGTGCCACA GTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGCAGCCGCAGTT ] consensusID : consensus_12161#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 353 fasta sequence [GGGAATAAGTGCGGCGCTGGGACACCCTAGCGAGAGCGGTTGTT--TCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTGCGCGGCCGCCGGGGCGGCGGCGGAGAGGAGGAGCGCGAGGCCGAACACCAGAGCCACCATCGTCGCCATCTTTGCCGCCATTGCTTGCCACTACGTTCGATCTGTTTAAATTTGTGTTGTGTTTGGCTACTAGC] [+] EMBL CB966309 [GGGAATAAGTGCGGCGCTGGGACACCCTAGCGAGAGCGGTTGTT TCTCCGGGA CTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTGCGCGGCCGCCGGGGCGGCGGCGGAGAGGAGGAGCGCGAGGCCGAACACCAGAGCCACCATCGTCGCCATCTTTGCCGCCATTGCTTGCCACTACGTTCGATCTGTTTAAATTTGTGTTGTGTTTGGCTACTAGC] [+] EMBL CB965316 [ GACA CCTAGCGAGAGCGG TGTG TCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTGCGCGGCCGCCGGGGCGGCGGCGGAGAGGAGGAGCGCGAGGCCGAACACCAGAGCCACCATCGTCGCCATCTTTGCCGC ] [+] EMBL CB965385 [ CCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCG CGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTGCGCGGCCGCCGGGGCGGCGGCGGAGAGGAGGAGCGCGAGGCCGAACACCAGAGCCACCATCGTCGCCATCTTTGCCGCCATTGCTTGCCACTACGTTCGATCTGTTTAAATTTGTGTTGTGTTTGGCTACTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12161#0 --------------------------TAATCTCTCGGTTTATTTCCATATATACAGGATA 34 consensus_12161#1 TTTTTTTTTTTTTTTTTGACTTTATTTAATCTCTCGGTTTATTTCCATATATACAGGATA 60 consensus_12161#2 ------------------------------------------------------------ consensus_12161#0 CATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACT 94 consensus_12161#1 CATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACT 120 consensus_12161#2 ------------------------------------------------------------ consensus_12161#0 GGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCAT 154 consensus_12161#1 GGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCAT 180 consensus_12161#2 ------------------------------------------------------------ consensus_12161#0 GCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAAC 214 consensus_12161#1 GCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAAC 240 consensus_12161#2 ------------------------------------------------------------ consensus_12161#0 CGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTC 274 consensus_12161#1 CGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTC 300 consensus_12161#2 --------GGGAATAAGTG-CGGC-GCTGGGACACCCTAGCGAGAGCGGTTGTT--TCTC 48 * ** * * * **** ***************************** **** consensus_12161#0 CGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCC 334 consensus_12161#1 CGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCC 360 consensus_12161#2 CGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCC 108 ************************************************************ consensus_12161#0 GCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCC 394 consensus_12161#1 GCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCC 420 consensus_12161#2 GCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCC 168 ************************************************************ consensus_12161#0 ACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTCCCGCCGNG- 453 consensus_12161#1 ACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTG-CAGCCGCAGTTCTGC-GCAGCC- 477 consensus_12161#2 ACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTGC-GCGGCCG 227 ************************************ ************* * ** * consensus_12161#0 GGGGGGNNNNNAAAAAAAAAAAAAAACCNNAAGCCNAANCCCAAACCCCCCTCCCNCTTT 513 consensus_12161#1 CAGCTATTCCCTTAGTGAGGA--------------------------------------- 498 consensus_12161#2 CCGGGGCGGCGGCGGAGAGGAGGAGCGCGAGGCCGAACACCAGAGCCACCATCGTCGCCA 287 * * * consensus_12161#0 NCCCCTTGTTGCCCNAACTTCANCNGTTAATTNTTTNTNTTTGGCACAACTAAGNTGCNN 573 consensus_12161#1 ------------------------------------------------------------ consensus_12161#2 TCTTTGCCGCCATTGCTTGCCACTACGTTCGATCTGTTTAAATTTGTGTTGTGTTTGGCT 347 consensus_12161#0 CCAATCCGCNCCGGGNTCNATNTAAGCNCCCGGGACCCCTTTTCCCTTNTAGGNTNATCA 633 consensus_12161#1 ------------------------------------------------------------ consensus_12161#2 ACTAGC------------------------------------------------------ 353 consensus_12161#0 CT 635 consensus_12161#1 -- consensus_12161#2 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||