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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 635 fasta sequence
[TAATCTCTCGGTTTATTTCCATATATACAGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAACCGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATC-CCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCAC-GGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTCCCGCCGNGGGGGGGNNNNNAAAAAAAAAAAAAAACCNNAAGCCNAANCCCAAACCCCCCTCCCNCTTTNCCCCTTGTTGCCCNAACTTCANCNGTTAATTNTTTNTNTTTGGCACAACTAAGNTGCNNCCAATCCGCNCCGGGNTCNATNTAAGCNCCCGGGACCCCTTTTCCCTTNTAGGNTNATCACT]
[+] EMBL BU672803 [TAATCTCTCGGTTTATTTCCATATATACAGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAACCGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATC CCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCAC GGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCT ]
[+] EMBL BE229088 [ CTCGGTTTATTTCCATATATACAGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAACCGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGAC CCGCCGGCGCCGGCCTTTCTGCCC CCACCGGGGGGGGGGGCCTCCCCGCCGCTG CCCAACAC GGCCCTGAATGGCACCCTTGGCCACAGTAT CTTCCGTCCTGCCNCAGTA CCCCATTGGTTGCA CATTA CC NCCTGGCAACC CA TTCCCCCGCCGNGGGGGGGNNNNNAAAAAAAAAAAAAAACCNNAAGCCNAANCCCAAACCCCCCTCCCNCTTTNCCCCTTGTTGCCCNAACTTCANCNGTTAATTNTTTNTNTTTGGCACAACTAAGNTGCNNCCAATCCGCNCCGGGNTCNATNTAAGCNCCCGGGACCCCTTTTCCCTTNTAGGNTNATCACT]
[-] EMBL CB966366 [ cggcacgagGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAACCGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCACCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACAGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGT ]
[-] EMBL CB965672 [ CTGCCCGCCATC CCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCAC GGCCCTGACTGG A CCTT GCCACAG ATGCTTC GTCGTGCCACAGTACCCCCATT GCTGCAGCAGTAGCCGT CTGGCA CCGCAGTTCTGCCGCCGaagc ]
consensusID : consensus_12161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 498 fasta sequence
[TTTTTTTTTTTTTTTTTGACTTTATTTAATCTCTCGGTTTATTTCCATATATACAGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTAT-GCGCGCCG-GCCGTTTATTTATCCTTCGAAATTAAC-CGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACA-GTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGCAGCCGCAGTTCTGCGCAGCCC-AGC-TATTCCCTTAGTGAGGA]
[-] EMBL CB964881 [TTTTTTTTTTTTTTTTTGACTTTATTTAATCTCTCGGTTTATTTCCATATATACAGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTAT GCGCGCCG GCCGTTTATTTATCCTTCGAAATTAAC CGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACA GTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGCAGCCGCAGTTCTGCGCAGCCC AGC TATTCCC ]
[-] EMBL CB966617 [ ATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTATGGCGCGCCG GCCGTTTATTTATCCTTCGAAATTAAC CGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCACTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGGTACCCCCATTGGCTGCAGCAGTAGCCGTCTGGCAGCCGCAGTTCTGAG GCCCAAGCGTATCCCTTTAGTGAGGA]
[-] EMBL CB966645 [ AAGCACTTAT GCGCGCCGNGCCGTTTATTTATCCTTCGAAATTAACNCGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGG CCTGACTGGCA CCTTGGCCACAGTATGCTTCGGTCGTGCCACA GTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGCAGCCGCAGTT ]
consensusID : consensus_12161#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 353 fasta sequence
[GGGAATAAGTGCGGCGCTGGGACACCCTAGCGAGAGCGGTTGTT--TCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTGCGCGGCCGCCGGGGCGGCGGCGGAGAGGAGGAGCGCGAGGCCGAACACCAGAGCCACCATCGTCGCCATCTTTGCCGCCATTGCTTGCCACTACGTTCGATCTGTTTAAATTTGTGTTGTGTTTGGCTACTAGC]
[+] EMBL CB966309 [GGGAATAAGTGCGGCGCTGGGACACCCTAGCGAGAGCGGTTGTT TCTCCGGGA CTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTGCGCGGCCGCCGGGGCGGCGGCGGAGAGGAGGAGCGCGAGGCCGAACACCAGAGCCACCATCGTCGCCATCTTTGCCGCCATTGCTTGCCACTACGTTCGATCTGTTTAAATTTGTGTTGTGTTTGGCTACTAGC]
[+] EMBL CB965316 [ GACA CCTAGCGAGAGCGG TGTG TCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTGCGCGGCCGCCGGGGCGGCGGCGGAGAGGAGGAGCGCGAGGCCGAACACCAGAGCCACCATCGTCGCCATCTTTGCCGC ]
[+] EMBL CB965385 [ CCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCG CGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTGCGCGGCCGCCGGGGCGGCGGCGGAGAGGAGGAGCGCGAGGCCGAACACCAGAGCCACCATCGTCGCCATCTTTGCCGCCATTGCTTGCCACTACGTTCGATCTGTTTAAATTTGTGTTGTGTTTGGCTACTAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12161#0 --------------------------TAATCTCTCGGTTTATTTCCATATATACAGGATA 34
consensus_12161#1 TTTTTTTTTTTTTTTTTGACTTTATTTAATCTCTCGGTTTATTTCCATATATACAGGATA 60
consensus_12161#2 ------------------------------------------------------------
consensus_12161#0 CATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACT 94
consensus_12161#1 CATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACT 120
consensus_12161#2 ------------------------------------------------------------
consensus_12161#0 GGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCAT 154
consensus_12161#1 GGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCAT 180
consensus_12161#2 ------------------------------------------------------------
consensus_12161#0 GCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAAC 214
consensus_12161#1 GCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAAC 240
consensus_12161#2 ------------------------------------------------------------
consensus_12161#0 CGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTC 274
consensus_12161#1 CGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTC 300
consensus_12161#2 --------GGGAATAAGTG-CGGC-GCTGGGACACCCTAGCGAGAGCGGTTGTT--TCTC 48
* ** * * * **** ***************************** ****
consensus_12161#0 CGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCC 334
consensus_12161#1 CGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCC 360
consensus_12161#2 CGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCC 108
************************************************************
consensus_12161#0 GCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCC 394
consensus_12161#1 GCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCC 420
consensus_12161#2 GCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCC 168
************************************************************
consensus_12161#0 ACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTCCCGCCGNG- 453
consensus_12161#1 ACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTG-CAGCCGCAGTTCTGC-GCAGCC- 477
consensus_12161#2 ACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTGC-GCGGCCG 227
************************************ ************* * ** *
consensus_12161#0 GGGGGGNNNNNAAAAAAAAAAAAAAACCNNAAGCCNAANCCCAAACCCCCCTCCCNCTTT 513
consensus_12161#1 CAGCTATTCCCTTAGTGAGGA--------------------------------------- 498
consensus_12161#2 CCGGGGCGGCGGCGGAGAGGAGGAGCGCGAGGCCGAACACCAGAGCCACCATCGTCGCCA 287
* * *
consensus_12161#0 NCCCCTTGTTGCCCNAACTTCANCNGTTAATTNTTTNTNTTTGGCACAACTAAGNTGCNN 573
consensus_12161#1 ------------------------------------------------------------
consensus_12161#2 TCTTTGCCGCCATTGCTTGCCACTACGTTCGATCTGTTTAAATTTGTGTTGTGTTTGGCT 347
consensus_12161#0 CCAATCCGCNCCGGGNTCNATNTAAGCNCCCGGGACCCCTTTTCCCTTNTAGGNTNATCA 633
consensus_12161#1 ------------------------------------------------------------
consensus_12161#2 ACTAGC------------------------------------------------------ 353
consensus_12161#0 CT 635
consensus_12161#1 --
consensus_12161#2 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||