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Oryza sativa
cluster # 12161 cluster # 12161       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12161#0 length = 635 sequences # 4  
consensus_12161#1 length = 498 sequences # 3  
consensus_12161#2 length = 353 sequences # 3  

consensusID : consensus_12161#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 635
fasta sequence
                              [TAATCTCTCGGTTTATTTCCATATATACAGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAACCGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATC-CCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCAC-GGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTCCCGCCGNGGGGGGGNNNNNAAAAAAAAAAAAAAACCNNAAGCCNAANCCCAAACCCCCCTCCCNCTTTNCCCCTTGTTGCCCNAACTTCANCNGTTAATTNTTTNTNTTTGGCACAACTAAGNTGCNNCCAATCCGCNCCGGGNTCNATNTAAGCNCCCGGGACCCCTTTTCCCTTNTAGGNTNATCACT]

[+] EMBL BU672803             [TAATCTCTCGGTTTATTTCCATATATACAGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAACCGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATC CCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCAC GGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCT                                                                                                                                                                                               ]
[+] EMBL BE229088             [      CTCGGTTTATTTCCATATATACAGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAACCGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGAC CCGCCGGCGCCGGCCTTTCTGCCC CCACCGGGGGGGGGGGCCTCCCCGCCGCTG CCCAACAC GGCCCTGAATGGCACCCTTGGCCACAGTAT CTTCCGTCCTGCCNCAGTA CCCCATTGGTTGCA CATTA CC NCCTGGCAACC CA TTCCCCCGCCGNGGGGGGGNNNNNAAAAAAAAAAAAAAACCNNAAGCCNAANCCCAAACCCCCCTCCCNCTTTNCCCCTTGTTGCCCNAACTTCANCNGTTAATTNTTTNTNTTTGGCACAACTAAGNTGCNNCCAATCCGCNCCGGGNTCNATNTAAGCNCCCGGGACCCCTTTTCCCTTNTAGGNTNATCACT]
[-] EMBL CB966366             [                    cggcacgagGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAACCGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCACCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACAGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGT                                                                                                                                                                                                  ]
[-] EMBL CB965672             [                                                                                                                                                                                                                                                                                                                 CTGCCCGCCATC CCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCAC GGCCCTGACTGG A CCTT GCCACAG ATGCTTC GTCGTGCCACAGTACCCCCATT GCTGCAGCAGTAGCCGT CTGGCA CCGCAGTTCTGCCGCCGaagc                                                                                                                                                                                    ]


>consensus_12161#0 TAATCTCTCGGTTTATTTCCATATATACAGGATACATGCATACTCAACATGTTCGATCGA GAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTT GCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTATG CGCGCCGGCCGTTTATTTATCCTTCGAAATTAACCGGTGGAAGCGAGCAGGGGGCGGCCG CTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGG CCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACT GGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGT AGCCGTCCTGGCAGCCGCAGTTCTCCCGCCGNGGGGGGGNNNNNAAAAAAAAAAAAAAAC CNNAAGCCNAANCCCAAACCCCCCTCCCNCTTTNCCCCTTGTTGCCCNAACTTCANCNGT TAATTNTTTNTNTTTGGCACAACTAAGNTGCNNCCAATCCGCNCCGGGNTCNATNTAAGC NCCCGGGACCCCTTTTCCCTTNTAGGNTNATCACT



consensusID : consensus_12161#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 498
fasta sequence
                              [TTTTTTTTTTTTTTTTTGACTTTATTTAATCTCTCGGTTTATTTCCATATATACAGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTAT-GCGCGCCG-GCCGTTTATTTATCCTTCGAAATTAAC-CGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACA-GTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGCAGCCGCAGTTCTGCGCAGCCC-AGC-TATTCCCTTAGTGAGGA]

[-] EMBL CB964881             [TTTTTTTTTTTTTTTTTGACTTTATTTAATCTCTCGGTTTATTTCCATATATACAGGATACATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTAT GCGCGCCG GCCGTTTATTTATCCTTCGAAATTAAC CGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACA GTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGCAGCCGCAGTTCTGCGCAGCCC AGC TATTCCC          ]
[-] EMBL CB966617             [                                                                          ATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACTGGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCATGCACGCTTACAGCGTAAGCACTTATGGCGCGCCG GCCGTTTATTTATCCTTCGAAATTAAC CGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCACTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGGTACCCCCATTGGCTGCAGCAGTAGCCGTCTGGCAGCCGCAGTTCTGAG  GCCCAAGCGTATCCCTTTAGTGAGGA]
[-] EMBL CB966645             [                                                                                                                                                                                                   AAGCACTTAT GCGCGCCGNGCCGTTTATTTATCCTTCGAAATTAACNCGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGG CCTGACTGGCA CCTTGGCCACAGTATGCTTCGGTCGTGCCACA GTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGCAGCCGCAGTT                                 ]


>consensus_12161#1 TTTTTTTTTTTTTTTTTGACTTTATTTAATCTCTCGGTTTATTTCCATATATACAGGATA CATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACT GGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCAT GCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAAC CGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTC CGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCC GCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCC ACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGCAGCCGCAGTTCTGCGCAGCCCAG CTATTCCCTTAGTGAGGA



consensusID : consensus_12161#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 353
fasta sequence
                              [GGGAATAAGTGCGGCGCTGGGACACCCTAGCGAGAGCGGTTGTT--TCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTGCGCGGCCGCCGGGGCGGCGGCGGAGAGGAGGAGCGCGAGGCCGAACACCAGAGCCACCATCGTCGCCATCTTTGCCGCCATTGCTTGCCACTACGTTCGATCTGTTTAAATTTGTGTTGTGTTTGGCTACTAGC]

[+] EMBL CB966309             [GGGAATAAGTGCGGCGCTGGGACACCCTAGCGAGAGCGGTTGTT  TCTCCGGGA CTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTGCGCGGCCGCCGGGGCGGCGGCGGAGAGGAGGAGCGCGAGGCCGAACACCAGAGCCACCATCGTCGCCATCTTTGCCGCCATTGCTTGCCACTACGTTCGATCTGTTTAAATTTGTGTTGTGTTTGGCTACTAGC]
[+] EMBL CB965316             [                    GACA CCTAGCGAGAGCGG TGTG  TCTCCGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTGCGCGGCCGCCGGGGCGGCGGCGGAGAGGAGGAGCGCGAGGCCGAACACCAGAGCCACCATCGTCGCCATCTTTGCCGC                                                        ]
[+] EMBL CB965385             [                         CCTAGCGAGAGCGGTTGTTGCTCTCCGGGACCTCGACGCCG CGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTGCGCGGCCGCCGGGGCGGCGGCGGAGAGGAGGAGCGCGAGGCCGAACACCAGAGCCACCATCGTCGCCATCTTTGCCGCCATTGCTTGCCACTACGTTCGATCTGTTTAAATTTGTGTTGTGTTTGGCTACTAGC]


>consensus_12161#2 GGGAATAAGTGCGGCGCTGGGACACCCTAGCGAGAGCGGTTGTTTCTCCGGGACCTCGAC GCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCCGCCGCTGCCCCA GCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCCACAGTACCCCCA TTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTGCGCGGCCGCCGGGGCGGCGGC GGAGAGGAGGAGCGCGAGGCCGAACACCAGAGCCACCATCGTCGCCATCTTTGCCGCCAT TGCTTGCCACTACGTTCGATCTGTTTAAATTTGTGTTGTGTTTGGCTACTAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12161#0      --------------------------TAATCTCTCGGTTTATTTCCATATATACAGGATA 34
consensus_12161#1      TTTTTTTTTTTTTTTTTGACTTTATTTAATCTCTCGGTTTATTTCCATATATACAGGATA 60
consensus_12161#2      ------------------------------------------------------------
                                                                                   

consensus_12161#0      CATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACT 94
consensus_12161#1      CATGCATACTCAACATGTTCGATCGAGAGATCTCATACATAGGAGTAGTACGGTAGTACT 120
consensus_12161#2      ------------------------------------------------------------
                                                                                   

consensus_12161#0      GGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCAT 154
consensus_12161#1      GGTGGTGGTGGTATAGTAGCTTATTTGCTGATGTAAGCTAGAGTTCAGGGCCGGCATCAT 180
consensus_12161#2      ------------------------------------------------------------
                                                                                   

consensus_12161#0      GCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAAC 214
consensus_12161#1      GCACGCTTACAGCGTAAGCACTTATGCGCGCCGGCCGTTTATTTATCCTTCGAAATTAAC 240
consensus_12161#2      ------------------------------------------------------------
                                                                                   

consensus_12161#0      CGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTC 274
consensus_12161#1      CGGTGGAAGCGAGCAGGGGGCGGCCGCTGGGACACCCTAGCGAGAGCGGTTGTTGCTCTC 300
consensus_12161#2      --------GGGAATAAGTG-CGGC-GCTGGGACACCCTAGCGAGAGCGGTTGTT--TCTC 48
                               * **  * * * **** *****************************  ****

consensus_12161#0      CGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCC 334
consensus_12161#1      CGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCC 360
consensus_12161#2      CGGGACCTCGACGCCGCCGGCGCCGGCCTTTCTGCCCGCCATCCCGGCGGCGGCCTCGCC 108
                       ************************************************************

consensus_12161#0      GCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCC 394
consensus_12161#1      GCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCC 420
consensus_12161#2      GCCGCTGCCCCAGCACGGCCCTGACTGGCACCCTTGGCCACAGTATGCTTCGGTCGTGCC 168
                       ************************************************************

consensus_12161#0      ACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTCCCGCCGNG- 453
consensus_12161#1      ACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTG-CAGCCGCAGTTCTGC-GCAGCC- 477
consensus_12161#2      ACAGTACCCCCATTGGCTGCAGCAGTAGCCGTCCTGGCAGCCGCAGTTCTGC-GCGGCCG 227
                       ************************************ ************* * ** *   

consensus_12161#0      GGGGGGNNNNNAAAAAAAAAAAAAAACCNNAAGCCNAANCCCAAACCCCCCTCCCNCTTT 513
consensus_12161#1      CAGCTATTCCCTTAGTGAGGA--------------------------------------- 498
consensus_12161#2      CCGGGGCGGCGGCGGAGAGGAGGAGCGCGAGGCCGAACACCAGAGCCACCATCGTCGCCA 287
                         *              *  *                                       

consensus_12161#0      NCCCCTTGTTGCCCNAACTTCANCNGTTAATTNTTTNTNTTTGGCACAACTAAGNTGCNN 573
consensus_12161#1      ------------------------------------------------------------
consensus_12161#2      TCTTTGCCGCCATTGCTTGCCACTACGTTCGATCTGTTTAAATTTGTGTTGTGTTTGGCT 347
                                                                                   

consensus_12161#0      CCAATCCGCNCCGGGNTCNATNTAAGCNCCCGGGACCCCTTTTCCCTTNTAGGNTNATCA 633
consensus_12161#1      ------------------------------------------------------------
consensus_12161#2      ACTAGC------------------------------------------------------ 353
                                                                                   

consensus_12161#0      CT 635
consensus_12161#1      --
consensus_12161#2      --
                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)