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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1435 fasta sequence
[AACCGCAGCCGGCCAAGCCGCTCCGCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCTTGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGCCTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCCCGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGCCACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCCAGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCAAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGATTTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGCACCTAAGAACCTGACCTCCGCACAAAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATTCGTCTTCCGCCGATGCAACTAGAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGTGCCTGAGTCTCTGTAACATGTGTGGGTTTTTTACTCGACAAAAATGTTTGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTATCTTTAATGAGAAGGTTCGAGCA]
[+] EMBL CB645946 [AACCGCAGCCGGCCAAGCCGCTCCGCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCTTGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGCCTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCCCGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGCCACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCCAGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCAAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCT ]
[+] EMBL AK109498 [ CGCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCTTGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGCCTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCCCGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGCCACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCCAGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGATTTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGCACCTAAGAACCTGACCTCCGCACAAAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATTCGTCTTCCGCCGATGCAACTAGAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGTGCCTGAGTCTCTGTAACATGTGTGGGTTTTTTACTCGACAAAAATGTTTGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTATCTTTAATGAGAAGGTTCGAGCA]
consensusID : consensus_12175#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1236 fasta sequence
[CTTCCCCAACTCTCCATTATTTTCGGATCGAGGCCCAACCGCAGCCGGCCAAGCCGCTCCGCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCTTGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGCCTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCCCGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGCCACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCCAGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCCCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGATTTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTAAGAATTTCTTAACCGAATAACATGTATATGTGAAATAATCATAT]
[+] EMBL AK109488 [CTTCCCCAACTCTCCATTATTTTCGGATCGAGGCCCAACCGCAGCCGGCCAAGCCGCTCCGCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCTTGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGCCTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCCCGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGCCACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCCAGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCCCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGATTTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTAAGAATTTCTTAACCGAATAACATGTATATGTGAAATAATCATAT]
[+] EMBL OSS15679A [ CGGCCGACACTCTGAGGCGGGGGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGAAGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTGCCTCCCTNATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGCTCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCNGTGGGATCTTntaa ]
consensusID : consensus_12175#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 925 fasta sequence
[TTTTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGTGAGACGCCCGGGCCGTCCTCCGTGCGCGGCGCTCGCTGATGGCCGTCGTCCTTTGCGCCGTCGGCCGACCTCATCCCCACCATTTTCGTCAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGTGATCCGGTCCCTG]
[+] EMBL AK067503 [TTTTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGTGAGACGCCCGGGCCGTCCTCCGTGCGCGGCGCTCGCTGATGGCCGTCGTCCTTTGCGCCGTCGGCCGACCTCATCCCCACCATTTTCGTCAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGTGATCCGGTCCCTG]
[+] EMBL CB656078 [ AACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGTGAGACGCCCGGGCCGTCCTCCGTGCGCGGCGCTCGCTGATGGCCGTCGTCCTTTGCGCCGTCGGCCGACCTCATCCCCACCATTTTCGTCAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGAGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAAC ]
[+] EMBL CB643447 [ CGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGTGAGACGCCCGGGCCGTCCTCCGTGCGCGGCGCTCGCTGATGGCCGTCGTCCTTTGCGCCGTCGGCCGACCTCATCCCCACCATTTTCGTCAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTG ]
[+] EMBL CB665500 [ GCCGACCCTTTCACCACCATTTTCGTCAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGTGATCCGGTCCCTG]
consensusID : consensus_12175#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 836 fasta sequence
[CCCTCTTTTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGTGATCCGGTCCCTG]
[+] EMBL AK105898 [CCCTCTTTTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGGAGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGCGACGGTCTCGGCGGGGCTGTCCCCCGCTCGAATCCGGCGATGACGGTCGTCCTCCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGGCGAGCGTCCCTCGCCTGGCCCCGCACGGATCCACCGGCGGCGGGGGGAGGAGAGTAGCGTCCTGAATCGATTCTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGACGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTACACATCCGGGAGGCGGGCGATGCATCCAGGCTGCGAGGGTCGGCGGTAGGTGGACCAGGAGCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATCCTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCAACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACCGGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCAACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGTCGTCCGGCGGCGGCGCCTGCGGTGATCCGGTCCCTG]
consensusID : consensus_12175#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence
[GGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGTTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGCACCTAAGAACCTGACCTCCGCACAAAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATTCGTCTTCCGCCGATGCAACTAGAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGTGCCTGAGTCTCTGTAACATGTGTGGGTTTTTTACTCGACAAAAATGTTTGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTATCTTTAATGAGAAGGTTCGAGCAA]
[-] EMBL CB646422 [GGTGGATGAGGAACAGGAGGGGATGAGGATCCAGCGACGACTCGGCGACGAGGAGATTTGGGCGGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCGACTACTCGGCCGGCAGTGGCGACGTCGTGGAGGATGTCGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGGATCAGCGCCTCGACTGCTCCTTGGCCGACGACAGCCGCTGCCCTGACGACGTCCTTAGCCCTCGTCGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGCGCGGCTGCCAGACGGCGAGTTGTGACCTATGTTCCTGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGCACCTAAGAACCTGACCTCCGCACAAAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATTCGTCTTCCGCCGATGCAACTAGAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGTGCCTGAGTCTCTGTAACATGTGTGGGTTTTTTACTCGACAAAAATGTTTGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTATCTTTAATGAGAAGGTTCGAGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12175#0 ------------------------------------AACCGCAGCCGGCCAAGCCGCTCC 24
consensus_12175#4 ------------------------------------------------------------
consensus_12175#1 CTTCCCCAACTCTCCATTATTTTCGGATCGAGGCCCAACCGCAGCCGGCCAAGCCGCTCC 60
consensus_12175#2 ------------------------------------------------------------
consensus_12175#3 ------------------------------------------------------------
consensus_12175#0 GCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGG 84
consensus_12175#4 ------------------------------------------------------------
consensus_12175#1 GCGTCGTTTCCATCGCCGCCGCCGCGGTCGTCATGGCCCCGGCCGACACTCTGAGGCGGG 120
consensus_12175#2 ------------------------------------------------------------
consensus_12175#3 ------------------------------------------------------------
consensus_12175#0 GGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGA 144
consensus_12175#4 ------------------------------------------------------------
consensus_12175#1 GGCGCGTCTCGGTCTCCGTCCGTGCGTCCGCCATGGCGGTGGCGTTGGCACCGAGAAGGA 180
consensus_12175#2 ------------------------------------------------------------
consensus_12175#3 ------------------------------------------------------------
consensus_12175#0 AGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTG 204
consensus_12175#4 ------------------------------------------------------------
consensus_12175#1 AGACGGATCCGGTGGGCGACGAGAAGGCCGTGGTGGGAGCTGTGGGAAGCTGCTGGCGTG 240
consensus_12175#2 ------------------------------------------------------------
consensus_12175#3 ------------------------------------------------------------
consensus_12175#0 CCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGC 264
consensus_12175#4 ------------------------------------------------------------
consensus_12175#1 CCTCCCTGATGCCGGTGGCTGTGGGAGCCGGCGGCGCTCCCATCGGTCACTGGAGGAGGC 300
consensus_12175#2 ------------------------------------------------------------
consensus_12175#3 ------------------------------------------------------------
consensus_12175#0 TCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCT 324
consensus_12175#4 ------------------------------------------------------------
consensus_12175#1 TCGGAGAAGGGCTCCCTTCCCAACTCCGGCCATGAATCGGCGACGGCACCGGTGGGATCT 360
consensus_12175#2 ------------------------------------------------------------
consensus_12175#3 ------------------------------------------------------------
consensus_12175#0 TGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGC 384
consensus_12175#4 ------------------------------------------------------------
consensus_12175#1 TGTGAGGAGGGGGCTGTGGTTGGCGACGGCATAAGGGAGCGGCGGGCGGACGACGGCGGC 420
consensus_12175#2 ------------------------------------------------------------
consensus_12175#3 ------------------------------------------------------------
consensus_12175#0 CTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCC 444
consensus_12175#4 ------------------------------------------------------------
consensus_12175#1 CTACAAGGGCTCGTCAGGCCATCCCCCGCCCGGATCCGGCGGTGGGCGTCGTCTCCCGCC 480
consensus_12175#2 ------------------------------------------------------------
consensus_12175#3 ------------------------------------------------------------
consensus_12175#0 CGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGC 504
consensus_12175#4 ------------------------------------------------------------
consensus_12175#1 CGGATCCGGTGACGGCAGCGGTGGGCGGCTCGGGAGCAAAATCCTAGCTCCCGCCGTCGC 540
consensus_12175#2 ------------------------------------------------------------
consensus_12175#3 ------------------------------------------------------------
consensus_12175#0 CACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCC 564
consensus_12175#4 ------------------------------------------------------------
consensus_12175#1 CACCCTCCTTCCCCCCTCTCCTCCACCTCCCCGTCGTCGAAGCGCGTCGCTGGGAGAGCC 600
consensus_12175#2 ----------------------------------------------------------TT 2
consensus_12175#3 -----------------------------------------------------CCCTCTT 7
consensus_12175#0 AGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGA 624
consensus_12175#4 ------------------------------------------------------GGTGGA 6
consensus_12175#1 AGGCGGCGAGCCGGGATGGCGGTGGCGGGGCCATCTTCTCTGCCTCCCCGCGCCGGTGGA 660
consensus_12175#2 TTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGG 62
consensus_12175#3 TTTTCGGATCGGCGAACCTCGGGGGTACGGCGGCGGTTTGTGGGTGGCAGCGACGGCGGG 67
** **
consensus_12175#0 TGAGGAACAGGAGGGGATGAGGATC--CAGCGACGACTCGGCGACGAGGAGATTTG-GGC 681
consensus_12175#4 TGAGGAACAGGAGGGGATGAGGATC--CAGCGACGACTCGGCGACGAGGAGATTTG-GGC 63
consensus_12175#1 TGAGGAACAGGAGGGGATGAGGATC--CAGCGACGACTCGGCGACGAGGAGATTTG-GGC 717
consensus_12175#2 AGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGC 122
consensus_12175#3 AGGAGAGCGGCGGGCGGCGGGCGGCGGCGGCTGTGGCTCGTGCTCGGGGATGGATGCGGC 127
* ** * * ** * * * * * ** * **** ** *** ** ***
consensus_12175#0 GGTGGATCCGGTGATGTCAAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCT 741
consensus_12175#4 GGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCT 123
consensus_12175#1 GGTGGATCCGGTGATGTCGAGGTGCGTGGGCGCCGGATCTGGCAGCGTCGGCGTCGTCCT 777
consensus_12175#2 GACGGTCTCGGCGGGGCTGTCCCCCGC-----TCGAATCCGGCGATGACGG--TCGTCCT 175
consensus_12175#3 GACGGTCTCGGCGGGGCTGTCCCCCGC-----TCGAATCCGGCGATGACGG--TCGTCCT 180
* ** *** * * ** ** *** *** * *** *******
consensus_12175#0 TCGCTCTGCCTCTGCTTCGTCGACTA---CTCGGCCGGCAG-TGGCGACGTCGTGGAGGA 797
consensus_12175#4 TCGCTCTGCCTCTGCTTCGTCGACTA---CTCGGCCGGCAG-TGGCGACGTCGTGGAGGA 179
consensus_12175#1 TCGCTCTGCCTCTGCTTCGTCGACTA---CTCGGCCGGCAG-TGGCGACGTCGTGGAGGA 833
consensus_12175#2 CCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGG 235
consensus_12175#3 CCGCCCGGATCCATTGGCGGCGGGCGTCCCTCGCCTGGCCCCTCACGGATCCACCGGCGG 240
*** * * * ** ** **** * *** * ** * * *
consensus_12175#0 TGT-CGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGG 856
consensus_12175#4 TGT-CGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGG 238
consensus_12175#1 TGT-CGTCTCCAGCTAGAGGGCGTCCACCCGTGAACCTGCGACGGGATGGGTGGGGATGG 892
consensus_12175#2 CGAGCGTCCCTCGCCTG--GCCCCGCACGGATCCACCGGCGGCGGGG-GGAGGAGAGTAG 292
consensus_12175#3 CGAGCGTCCCTCGCCTG--GCCCCGCACGGATCCACCGGCGGCGGGG-GGAGGAGAGTAG 297
* **** * ** * * * *** * *** *** **** ** * * * *
consensus_12175#0 ATCAGCGCCTCGACTGCTCCTTGGC--CGACGACAGCCGCTGCCCTGACGACGTCCTTAG 914
consensus_12175#4 ATCAGCGCCTCGACTGCTCCTTGGC--CGACGACAGCCGCTGCCCTGACGACGTCCTTAG 296
consensus_12175#1 ATCAGCGCCTCGACTGCTCCTTGGC--CGACGACAGCCGCTGCCCTGACGACGTCCTTAG 950
consensus_12175#2 CGTCCTGAATCGATT-CTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGA 351
consensus_12175#3 CGTCCTGAATCGATT-CTCGTCGGCGGCGGTGGCGCCCGCTGGATTTGTCGTGAGGATGA 356
* **** * *** * *** ** * * ****** * * *
consensus_12175#0 CCCTCGT-CGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGC 973
consensus_12175#4 CCCTCGT-CGGCGGCCGCCGTTCCGCCTCCATCACCCACTTCTGTCACCTTCGTCCGCGC 355
consensus_12175#1 CCCTCGT-CGGCGGCCGCCGTTCCGCCCCCATCACCCACTTCTGTCACCTTCGTCCGCGC 1009
consensus_12175#2 CGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTAC-ACATCCGGGAGGCGGGC 410
consensus_12175#3 CGGTGGGGTCGTTGCCGTCATTCCTCCCCCAACGTCGACTAC-ACATCCGGGAGGCGGGC 415
* * * * **** * **** ** *** * * *** * ** ** **
consensus_12175#0 GCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGAT------ 1027
consensus_12175#4 GCGGCTGCCAGACGGCGAG----------------------------------------- 374
consensus_12175#1 GCGGCTGCCAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGAT------ 1063
consensus_12175#2 GATGCATCCAGGCTGCGAGGTGAGACGCCCGGGCCGTCCTCCGTGCGCGGCGCTCGCTGA 470
consensus_12175#3 GATGCATCCAGGCTGCGAGG---------------------------------------- 435
* ** **** * *****
consensus_12175#0 -------------TTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATG 1074
consensus_12175#4 -------------------------------TTGTGACCTATGTTCCTGGACTGCTCATG 403
consensus_12175#1 -------------TTGTTCGCTATGCATTCATTGTGACCTATGTTCCTGGACTGCTCATG 1110
consensus_12175#2 TGGCCGTCGTCCTTTGCGCCGTCGGCCGACCTCATCCCCACCATTTTCGTCAGGGTCGGC 530
consensus_12175#3 ------------------------------------------------------GTCGGC 441
**
consensus_12175#0 TGTCTATATAGAAGATTGCACTCAGCCCCTGG-ATCGCAGTAGAATCTTCCTTGACTAAG 1133
consensus_12175#4 TGTCTATATAGAAGATTGCACTCAGCCCCTGG-ATCGCAGTAGAATCTTCCTTGACTAAG 462
consensus_12175#1 TGTCTATATAGAAGATTGCACTCAGCCCCTGG-ATCGCAGTAGAATCTTCCTTGACTAAG 1169
consensus_12175#2 GGTAGGTGGACCAGGA-GCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATC 589
consensus_12175#3 GGTAGGTGGACCAGGA-GCACACGGCTCCAGCCATGGCGCCGCCTCCCACGCCGGTCATC 500
** * * ** **** * ** ** * ** ** * * * *
consensus_12175#0 CTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGC-ACCTAAGAACCTGACCTCCGCACA 1192
consensus_12175#4 CTTAATTGTCTATTCTTTGGGTTGGGACAAGGCGC-ACCTAAGAACCTGACCTCCGCACA 521
consensus_12175#1 CTTAATTGTCTATTCTTTGGGTAAGAATTTCTTA--ACCGAATAACATG-TATATGTGAA 1226
consensus_12175#2 CTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCA 649
consensus_12175#3 CTCATCTGCTGCTTCTTCCACAATAGATCCACCGTCCCCCTACGCCGTCGCCGCGGATCA 560
** * ** ***** * ** * * * * *
consensus_12175#0 AAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATT----CGTCTTCCGCC 1248
consensus_12175#4 AAACTTGTAAGGTTGCAGGCGCATGCATCATCCTCGGCTATAATT----CGTCTTCCGCC 577
consensus_12175#1 ATAATCATAT-------------------------------------------------- 1236
consensus_12175#2 ACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACC 709
consensus_12175#3 ACACCTGGGAGGTTCCATGGCCACAGATCGTGGTCGGGACCGGCAGCAGCGGACTTCACC 620
* *
consensus_12175#0 GATGCAACTA--GAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGT- 1305
consensus_12175#4 GATGCAACTA--GAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTATCTGT- 634
consensus_12175#1 ------------------------------------------------------------
consensus_12175#2 GGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCA 769
consensus_12175#3 GGTGCGGGCGTCGAGGAGAGCCACCTCAGCTTCTTCCAGCGCTGGTGGTCGTCCTCCCCA 680
consensus_12175#0 ---GCCTGAGTCTCTGTAACATGTGTG--GGTTTTTTACTCGACAAAAATGT-------T 1353
consensus_12175#4 ---GCCTGAGTCTCTGTAACATGTGTG--GGTTTTTTACTCGACAAAAATGT-------T 682
consensus_12175#1 ------------------------------------------------------------
consensus_12175#2 ACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGC 829
consensus_12175#3 ACGGCCTTCATCTTCTCGCCGTGAGAGCCAGGCGGCGAGTCGGGATGGCGGTGGCGGGGC 740
consensus_12175#0 TGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTAT 1413
consensus_12175#4 TGTTTTGGCTATATGGATTTGTTGGTAAATAGGATACTCTATGGTCAGGTAGTATTTTAT 742
consensus_12175#1 ------------------------------------------------------------
consensus_12175#2 CATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGT 889
consensus_12175#3 CATCTTCTCTGCCTCCCCGCGCCGGTGGATGAGGAACAGGAGGGGATGGGGCTGGCACGT 800
consensus_12175#0 CTTTAATGAGAAGGTTCGAGCA--------------- 1435
consensus_12175#4 CTTTAATGAGAAGGTTCGAGCAA-------------- 765
consensus_12175#1 -------------------------------------
consensus_12175#2 CGTCCG-GCGGCGGCGCCTGCGGTGATCCGGTCCCTG 925
consensus_12175#3 CGTCCG-GCGGCGGCGCCTGCGGTGATCCGGTCCCTG 836
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||