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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 978 fasta sequence
[TGAAGGAGTAGAAAGGTACGCATGATGCATCAAACCTCCCTTCCATGTCTATAGACCCTCGAGCCCTAATCCGGGGACGAGATTCATCCCTCCGCGACCAAAGAAACCGAATTAACCTCCGAGTCCTCTGCTCCCTCTTTGCTTCTTGGACCAGGATCTGATCTGCGCGGCGCTCGACCGGAATCGCGCGGAGATGGACGGCGGCGACCTGAGGAGCAGCATCAAGAAGTGGAACGTCATCTACCCGGTGTACCTCAACTCCAAGAAGACGGTCGCCGAGGGCCGCCGCATCGCCTCCGGCAAGGCCTGCCCCGACCCCACCTGCGTCGAGATCGCCGATTGCTGCTCCCACCTCAAGATCCCTCACGCCA-TCGAATTGGATAAGGCGTATCCACGAGATTTCTTCCAGGTGGGAAGGGTGAGAGTGCAGCTCAAGAAGGATGACGGCTCCCCAGTCAATCCTGCAATCAAAACAAAGAAGCAGCTGATGATCCAAATCGCGGAGCTAGTCCCCAAGCAT-CATGGCAGGACTAAGAAGCAGGAACCAGCAGCTTCTTCAACTGCAGGGACTTCAAAGGGGAAAGGTGCAAGAAAAAGAAGTGATGATAGTACACCATCTTGTGTCGTTCTTCTGTCCATAGGAAGTTCCCTGAGATTCGTCGATGTCTGTTTTGAGGCCTGAAATTCTGCGTCTCTTCT-GTGCTCTGAATTTCTAATTTCTCGGGAAACATCAATCAATGCCCGTATTTCTTGTGATTTGGACTATTGGAAAGAGGAAGATTGCACTGTTGTTTGCAATGGATAGCTTCCAAGTTATGTTTTTGAATAGAGCTCACCTTGAACATGCTTATGCTACTAAACCCCTTGCAACAGTGGGCTAGCAGAGGTTATGACTTATGAGGCTAACAGTGGCCATCGGATGATTAATCGTTCATGTGTCAATTGGGCCTTGGCCTACGTTTCTTTAAAAAAAAAAAA]
[+] EMBL CF277523 [TGAAGGAGTAGAAAGGTACGCATGATGCATCAAACCTCCCTTCCATGTCTATAGACCCTCGAGCCCTAATCCGGGGACGAGATTCATCCCTCCGCGACCAAAGAAACCGAATTAACCTCCGAGTCCTCTGCTCCCTCTTTGCTTCTTGGACCAGGATCTGATCTGCGCGGCGCTCGACCGGAATCGCGCGGAGATGGACGGCGGCGACCTGAGGAGCAGCATCAAGAAGTGGAACGTCATCTACCCGGTGTACCTCAACTCCAAGAAGACGGTCGCCGAGGGCCGCCGCATCGCCTCCGGCAAGGCCTGCCCCGACCCCACCTGCGTCGAGATCGCCGATTGCTGCTCCCACCTCAAGATCCCTCACGCCA TCGAATTGGATAAGGCGTATCCACGAGATTTCTTCCAGGTGGGAAGGGTGAGAGTGCAGCTCAAGAAGGATGACGGCTCCCCAGTCAATCCTGCAATCAAAACAAAGAAGCAGCTGATGATCCAAATCGCGGAGCTAGTCCCCAAGCAT CATGGCAGGACTAAGAAGCAGGAACCAGCAGCTTCTTCAACTGCA ]
[+] EMBL OS19030 [ cgTGTCTATAGACCCTCGAGCCCTAATCCGGGGACGAGATTCATCCCTCCGCGACCAAAGAAACCGAATTAACCTCCGAGTCCTCTGCTCCCTCTTTGCTTCTTGGACCAGGATCTGATCTGCGCGGCGCTCGACCGGAATCGCGCGGAGATGGACGGCGGCGACCTGAGGAGCAGCATCAAGAAGTGGAACGTCATCTACCCGGTGTACCTCAACTCCAAGAAGACGGTCGCCGAGGGCCGCCGCATCGCCTCCGGCAAGGCCTGCCCCGACCCCACCTGCGTCGAGATCGCCGATTGCTGCTCCCACCTCAAGATCCCTCACGCCA TCGAATTGGATAAGGCGTATCCACGAGATTTCTTCCAGGTGGGAAGGGTGAGAGTGCAGCTCAAGAAGGATGACGGCTCCCCAGTCAATCCTGCAATCAAAACAAAGAAGCAGCTGATGATCCAAATCGCGGAGCTAGTCCCCAAGCAT CATGGCAGGACTAAGAAGCAGGAACCAGCAGCTTCTTCAACTGC ]
[+] EMBL OS0058A [ ACCCTCGAGCCCTAATCCGGGGACGAGATTCATCCCTCCGCGACCAAAGAAACCGAATTAACCTCCGAGTCCTCTGCTCCCTCTTTGCTTCTTGGACCAGGATCTGATCTGCGCGGCGCTCGACCGGAATCGCGCGGAGATGGACGGCGGCGACCTGAGGAGCAGCATCAAGAAGTGGAACGTCATCTACCCGGTGTACCTCAACTCCAAGAAGACGGTCGCCGAGGGCCGCCGCATCGCCTCCGGNAAGGCCTNNCCCGACCCCACCTGCGTCGAGATCGTCGATTGCTGCTTCNAACTNAAGATCCCTTANGGCATTGGAATTGGA ]
[+] EMBL AK059915 [ CAAAGAAACCGAATTAACCTCCGAGTCCTCTGCTCCCTCTTTGCTTCTTGGACCAGGATCTGATCTGCGCGGCGCTCGACCGGAATCGCGCGGAGATGGACGGCGGCGACCTGAGGAGCAGCATCAAGAAGTGGAACGTCATCTACCCGGTGTACCTCAACTCCAAGAAGACGGTCGCCGAGGGCCGCCGCATCGCCTCCGGCAAGGCCTGCCCCGACCCCACCTGCGTCGAGATCGCCGATTGCTGCTCCCACCTCAAGATCCCTCACGCCA TCGAATTGGATAAGGCGTATCCACGAGATTTCTTCCAGGTGGGAAGGGTGAGAGTGCAGCTCAAGAAGGATGACGGCTCCCCAGTCAATCCTGCAATCAAAACAAAGAAGCAGCTGATGATCCAAATCGCGGAGCTAGTCCCCAAGCAT CATGGCAGGACTAAGAAGCAGGAACCAGCAGCTTCTTCAACTGC ]
[+] EMBL BI798211 [ atgcgGCGGAGCTAGTCCCCAAGCATCCATGGCAGGACTAAGAA CAGGAACCAGCAGCTTCTTCAACTGCAGGGACTTCAAAGGGGAAAGGTGCAAGAAAAAGAAGTGATGATAGTACACCATCTTGTGTCGTTCTTCTGTCCATAGGAAGTTCCCTGAGATTCGTCGATGTCTGTTTTGAGCCCTGAAATTCTGCGTCTCTTCTGGTGCTCTGAATTTCTAATTTCTCGGGAA ]
[+] EMBL C97879 [ TGATGATAGTACACCATCTTGTGTCGTTCTTCTGTCCATAGGAAGTTCCCTGAGATTCGTCGATGTCTGTTTTGAGGCCTGAAATTCTGCGTCTCTTCT GTGCTCTGAATTTCTAATTTCTCGGGAAACATCAATCAATGCCCGTATTTCTTGTGATTTGGACTATTGGAAAGAGGAAGATTGCACTGTTGTTTGCAATGGATAGCTTCCAAGTTATGTTTTTGAATAGAGCTCACCTTGAACATGCTTATGCTACTAAACCCCTTGCAACAGTGGGCTAGCAGAGGTTATGACTTATGAGGCTAACAGTGGCCATCGGATGATTAATCGTTCATGTGTCAATTGGGCCTTGGCCTACGTTTCTTTAAAAAAAAAAAA]
[+] EMBL AU075590 [ TGATGATAGTACACCATCTTGTGTCGTTCTTCTGTCCATAGGAAGTTCCCTGAGATTCGCCGATGTCTGTTTTGAGGCCTGAAATTCTGCGTCTCTTCT GTGCTCTGAATTTCTAATTTCTCGGGAAACATCAATCAATGCCCGTATTTCTTGTGATTTGGACTATTGGAAAGAGGAAGATTGCACTGTTGTTTGCAATGGATAGCTTCCAAGTTATGTTTTTGAATAGAGCTCACCTTGAACATGCTTATGCTACTAAAaaaaaa ]
consensusID : consensus_12181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 482 fasta sequence
[GAGTAGAAAGACTCTGAAAGTCGGAAGCTCGTCAACCTCTTGCTTGGGTCGAAACTCGAAAGTCCATCCCCGGATCTGATCTGCGCGGCGCTCGACCGGAATCGCGCGGAGATGGACGGCGGCGACCTGAGGAGCAGCATCAAGAAGTGGAACGTCATCTACCCGGTGTACCTCAACTCCAAGAAGACGGTCGCCGAGGGCCGCCGCATCGCCTCCGGCAAGGCCTGCCCCGACCCCACCTGCGTCGAGATCGCCGATTGCTGCTCCCACCTCAAGATCCCTCACGCCATCGAATTGGATAAGGCGTATCCACGAGATTTCTTCCAGGTGGGAAGGGTGAGAGTGCAGCTCAAGAAGGATGACGGCTCCCCAGTCAATCCTGCAATCAAAACAAAGAAGCAGCTGATGATCCAAATCGCGGAGCTAG-TCCCCAAGCATCATGGCAGGACTAAGAAGCAGGAACCAGCAGCTTCTTCAACTGC]
[+] EMBL CF292203 [GAGTAGAAAGACTCTGAAAGTCGGAAGCTCGTCAACCTCTTGCTTGGGTCGAAACTCGAAAGTCCATCCCCGGATCTGATCTGCGCGGCGCTCGACCGGAATCGCGCGGAGATGGACGGCGGCGACCTGAGGAGCAGCATCAAGAAGTGGAACGTCATCTACCCGGTGTACCTCAACTCCAAGAAGACGGTCGCCGAGGGCCGCCGCATCGCCTCCGGCAAGGCCTGCCCCGACCCCACCTGCGTCGAGATCGCCGATTGCTGCTCCCACCTCAAGATCCCTCACGCCATCGAATTGGATAAGGCGTATCCACGAGATTTCTTCCAGGTGGGAAGGGTGAGAGTGCAGCTCAAGAAGGATGACGGCTCCCCAGTCAATCCTGCAATCAAAACAAAGAAGCAGCTGATGATCCAAATCGCGGAGCTAG TCCCCAAGCATCATGGCAGGACTAAGAAGCAGGAACCAGCAGCTTCTTCAACTGC]
[+] EMBL OSC458 [ TTCCAGGTGGGAAGGGTGAGAGTGCAGCTCAAGAAGGATGACGGCTCCCCAGTCAATCCTGCAATCAAAACAAAGAAGCAGCTGATGATCCAAATCGCGGA CTAGNTCCCCAAGCATCATGGCAGGACTAAGAAGCAGGAACCAGCAGCTTCTTCAACTGC]
consensusID : consensus_12181#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence
[ACACCATCGTGTGGCGGGGCTTCTGGTGCATAGGAAGTGCCCTTAGATTCGGCGATGTCTGGTTTGAGGCCTTAAATTCTGCGGCGCTTCTGTGCCCTGAATTTCTAAGTTCTCGAGAAACATCAATCAATGCCCGTATTTCTTGTTATTTGGACTATTGGAAAGAGGAAGATTGCACTCTTTTTTGCAATGGATAACTTCCAAATTATTTTTTTAAAAAAAAA]
[-] EMBL AA752281 [ACACCATCGTGTGGCGGGGCTTCTGGTGCATAGGAAGTGCCCTTAGATTCGGCGATGTCTGGTTTGAGGCCTTAAATTCTGCGGCGCTTCTGTGCCCTGAATTTCTAAGTTCTCGAGAAACATCAATCAATGCCCGTATTTCTTGTTATTTGGACTATTGGAAAGAGGAAGATTGCACTCTTTTTTGCAATGGATAACTTCCAAATTATTTTTTTAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12181#0 TGAAGGAGTAGAAAGGTACGCATGATGCATCAAACCTCCCTTCCATGTCTATAGACCCTC 60
consensus_12181#2 ------------------------------------------------------------
consensus_12181#1 ------------------------------------------------------------
consensus_12181#0 GAGCCCTAATCCGGGGACGAGATTCATCCCTCCGCGACCAAAGAAACCGAATTAACCTCC 120
consensus_12181#2 ------------------------------------------------------------
consensus_12181#1 ------------------------------------------------------------
consensus_12181#0 GAGTCCTCTGCTCCCTCTTTGCTTCTTGGACCAGGATCTGATCTGCGCGGCGCTCGACCG 180
consensus_12181#2 ------------------------------------------------------------
consensus_12181#1 ------------------------------------------------------------
consensus_12181#0 GAATCGCGCGGAGATGGACGGCGGCGACCTGAGGAGCAGCATCAAGAAGTGGAACGTCAT 240
consensus_12181#2 ------------------------------------------------------------
consensus_12181#1 ------------------------------------------------------------
consensus_12181#0 CTACCCGGTGTACCTCAACTCCAAGAAGACGGTCGCCGAGGGCCGCCGCATCGCCTCCGG 300
consensus_12181#2 ------------------------------------------------------------
consensus_12181#1 ------------------------------------------------------------
consensus_12181#0 CAAGGCCTGCCCCGACCCCACCTGCGTCGAGATCGCCGATTGCTGCTCCCACCTCAAGAT 360
consensus_12181#2 ------------------------------------------------------------
consensus_12181#1 ------------------------------------------------------------
consensus_12181#0 CCCTCACGCCATCGAATTGGATAAGGCGTATCCACGAGATTTCTTCCAGGTGGGAAGGGT 420
consensus_12181#2 ------------------------------------------------------------
consensus_12181#1 ------------------------------------------------------------
consensus_12181#0 GAGAGTGCAGCTCAAGAAGGATGACGGCTCCCCAGTCAATCCTGCAATCAAAACAAAGAA 480
consensus_12181#2 ------------------------------------------------------------
consensus_12181#1 ---------------------------------------------------------GAG 3
consensus_12181#0 GCAGCTGATGATCCAAATCGCGGAGCTAGTCCCCAAGCATCATGGCAGGACTAAGAAGCA 540
consensus_12181#2 ------------------------------------------------------------
consensus_12181#1 TAGAAAGACTCTGAAAGTCGGAAGCTCGTCAACCTCTTGCTTGGGTCGAAACTCGAAAGT 63
consensus_12181#0 GGAACCAGCAGCTTCTTCAACTGCAGGGACTTCAAAGGGGAAAGGTGCAAGAAAAAGAAG 600
consensus_12181#2 ------------------------------------------------------------
consensus_12181#1 CCATCCCCGGATCTGATCTGCGCGGCGCTCGACCGGAATCGCGCGGAGATGGACGGCGGC 123
consensus_12181#0 TGATGATAGTACACCATCTTGTGTCGTT-CTTCTG-TCCATAGGAAGTTCC--CTGAGAT 656
consensus_12181#2 ----------ACACCATCGTGTGGCGGGGCTTCTGGTGCATAGGAAGTGCC--CTTAGAT 48
consensus_12181#1 GACCTGAGGAGCAGCATCAAGAAGTGGAACGTCATCTACCCGGTGTACCTCAACTCCAAG 183
** **** * * * ** * * * * ** *
consensus_12181#0 TCGTCGATGTCTGTTTTGAGGCCTGAAATTCTGCGTCTCTTCTGTGCTCTGAATTTCTAA 716
consensus_12181#2 TCGGCGATGTCTGGTTTGAGGCCTTAAATTCTGCGGCGCTTCTGTGCCCTGAATTTCTAA 108
consensus_12181#1 AAGACGGTCGCCGAGG-GCCGCCGCATCGCCTCCGGCAAGGCC-TGCCCCGA--CCCCAC 239
* ** * * * * *** * ** ** * * *** * ** * *
consensus_12181#0 TTTCTCGGGAAACATCAATCAATGCCCGTATTTCTTG-TGATTTGGACTATTGGAAAGAG 775
consensus_12181#2 GTTCTCGAGAAACATCAATCAATGCCCGTATTTCTTG-TTATTTGGACTATTGGAAAGAG 167
consensus_12181#1 CTGCGTCGAGATCGCCGATTGCTGCTCCCACCTCAAGATCCCTCACGCCATCGAATTGGA 299
* * * * * ** *** * * ** * * * * ** * * *
consensus_12181#0 GAAGAT-----TGCACTGTTGTTTGCAATGGATAGCTTCCAAGTTATGTTTTTGAATAGA 830
consensus_12181#2 GAAGAT-----TGCACTCTTTTTTGCAATGGATAACTTCCAAATTATTTTTTTAAAAAAA 222
consensus_12181#1 TAAGGCGTATCCACGAGATTTCTTCCAGGTGGGAAGGGTGAGAGTGCAGCTCAAGAAGGA 359
*** * ** ** ** * * * * * * *
consensus_12181#0 GCTCACCTTGAACATGCTTATGCTACTAAACCCCTTGCAACAGTGGGCTAGCAGAGGTTA 890
consensus_12181#2 AA---------------------------------------------------------- 224
consensus_12181#1 TGACGGCTCCCCAGTCAATCCTGCAATCAAAACAAAGAAGCAGCTGATGATCCAAATCGC 419
consensus_12181#0 TGACTTATGAGGCTAACAGTGGCCATCGGATGATTAATCGTTCATGTGTCAATTGGGCCT 950
consensus_12181#2 ------------------------------------------------------------
consensus_12181#1 GGAGCTAGTCCCCAAGCATCATGGCAGGACTAAGAAGCAGGAACCAGCAGCTTCTTCAAC 479
consensus_12181#0 TGGCCTACGTTTCTTTAAAAAAAAAAAA 978
consensus_12181#2 ----------------------------
consensus_12181#1 TGC------------------------- 482
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||