These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 722 fasta sequence [AGGCGGAGAAAAACACAAGGCTCTCAAGGAGAGAGAGAAAACCC-TAGCTAGCTAGGCGCCGTCGCAACCTT-GCTCCCGTCCGTCC-GTACGTCGGAACGCAGCTATGGCGGCTGTGGCGCTGCGCTCTCTCGCAAGGAAGGCCATGCCCGCCCCGGCCACCCTCCGCCGGGCGCCGCCGCCATCGCGCTCCCTCCACCGCCACAGCCTCGAGGATAAGCTGCGTGGCACGACATCTCCCAAGACTACAGCTCCTACTGATCAAGGTCGAGTC-AGTTATTTTGAAGAAAATCCTGAGCTTTTTGCTGAATTGGTGAAACGAGATGCAGCTCGGAGGATGTTCACCAGGTTGGTGCTGGCGGGTGCTGCTTCAGCGTACGCTGGTGCCCTTTTCGTTGTGTCGTCTATGCGCGATAGCGTGAAGGAAGAGCTTCGCAAAAACATCTACGACTAGGAGCTCTATCGCCAGCTGGTGGCTACATATTTCTGTCTCTGTGTTATCTATGACTCTGCCCTGCTTATCATGGCTTGTTTAATGTAACATGGCATTTCCTACTAATCATCGATGTGTAACGTACCATCGTACTATAGTTGCACTCTATAATAGTTTGTGATGGTTGGTTGGTAGTAACGCCGTTACTTCATGGTATTTTTGGATAGACTGGTGAATAGCCAATACGGTTTCTATAGTTTTGCTCTGTGATCAGTTTAGTCCCTAAAAAAAA] [+] EMBL AU069150 [AGGCGGAGAAAAACACAAGGCTCTCAAGGAGAGAGAGAAAACCC TAGCTAGCTAGGCGCCGTCGCAACCTT GCTCCCGTCCGTCC GTACGTCGGAACGCAGCTATGGCGGCTGTGGCGCTGCGCTCTCTCGCAAGGAAGGCCATGCCCGCCCCGGCCACCCTCCGCCGGGCGCCGCCGCCATCGCGCTCCCTCCACCGCCACAGCCTCGAGGATAAGCTGCGTGGCACGACATCTCCCAAGACTACAGCTCCTACTGATCAAGGTCGAGTC AGTTATTTTGAAGAAAATCCTGAGCTTTTTGCTGAATTGGTGAAACGAGATGCAGCTCGGAGGATGTTCACCAGGTTGGTGCTGGCGGGTGCTGCTTCAGCGTACGCTGGTGCCCTTTTCGTTGTGTCGTCTATG ] [+] EMBL AK064609 [ GGCGGAGAAAAACACAAGGCTCTCAAGGAGAGAGAGAAAACCC TAGCTAGCTAGGCGCCGTCGCAACCTT GCTCCCGTCCGTCC GTACGTCGGAACGCAGCTATGGCGGCTGTGGCGCTGCGCTCTCTCGCAAGGAAGGCCATGCCCGCCCCGGCCACCCTCCGCCGGGCGCCGCCGCCATCGCGCTCCCTCCACCGCCACAGCCTCGAGGATAAGCTGCGTGGCACGACATCTCCCAAGACTACAGCTCCTACTGATCAAGGTCGAGTC AGTTATTTTGAAGAAAATCCTGAGCTTTTTGCTGAATTGGTGAAACGAGATGCAGCTCGGAGGATGTTCACCAGGTTGGTGCTGGCGGGTGCTGCTTCAGCGTACGCTGGTGCCCTTTTCGTTGTGTCGTCTATGCGCGATAGCGTGAAGGAAGAGCTTCGCAAAAACATCTACGACTAGGAGCTCTATCGCCAGCTGGTGGCTACATATTTCTGTCTCTGTGTTATCTATGACTCTGCCCTGCTTATCATGGCTTGTTTAATGTAACATGGCATTTCCTACTAATCATCGATGTGTAACGTACCATCGTACTATAGTTGCACTCTATAATAGTTTGTGATGGTT ] [+] EMBL AU101286 [ ACAAGGCTCTCAAGGAGAGAGAGAAAACCC TAGCTAGCTAGGCGCCGTCGCAACCTT GCTCCCGTCCGTCC GTACGTCGGAACGCAGCTATGGCGGCTGTGGCGCTGCGCTCTCTCGCAAGGAAGGCCATGCCCGCCCCGGCCACCCTCCGCCGGGCGCCGCCGCCATCGCGCTCCCTCCACCGNCACAGCCTCGAGGATAAGCTGCGTGGCACGACATCTCCCAAGACTACAGCTCCTACTGATCAAGGTCGAGTCAAGTTATTTTGAAGAAAAT CTGAGCTTTTTGCTGAATTGGTGAAACGAGATGCAGCTCGGAGGATGTTCACCAGGTTGGTGCTGGCGGGTGCTGCTTCA CGTACGCTGGTGCCCTTTTCGTTGTGTCGTCTATGCGCGATA ] [+] EMBL AU101287 [ AACCCNAAGCTAGTTAGGCCCCGTNGCAACCTTGGCTCCCGTCCGGCCGGTACGTCGGAACCCAGCTAT GCCGCTGTGGCGTTGCGCTCTCTCGCAAGGAAGCCCATG CCGCCCCGGCCACCCTCCGCCGGGCGCCGCCGCCATCGCGCTCCCTCCACCGCCACAGCCTCGAGGATAAGCTGCGTGGCACGACATCTCCCAAGACTACAGCTCCTACTGATCAAGGTCGAGTC AGTTATTTTGAAGAAAATCCTGAGCTTTTTGCTGAATTGGTGAAACGAGATGCAGCTCGGAGGATGTTCACCAGGTTGGTGCTGGCGGGTGCTGCTTCAGCGTACGCTGGTGCCCTTTTCGTTGTGTCGTCTATGCGCGATAGCGTGAAGGAAGAGCTTCGCAAAAACATCTACGACTAGGAGCTCTATCGCCAGCTGGTGGCTACATATTTCTGTCTCTGTGTTATCTATGACTCTGCCCTGCTTATCATGGCTTGTTTAATGTAACATGGCATTTCCTACTAATCATCGATGTGTAACGTACCATCGTACTATAGTTGCACTCTATAATAGTTTGTGATGGTTGGTTGGTAGTAACGCCGTTACTTCATGGTATTTTTGGATAGACTGGTGAATAGCCAATACGGTTTCTATAGTTTTGCTCTGTGATCAGTTTAGTCCCTAAAAAAAA] [+] EMBL AU181789 [ CTCCCAAGACTACAGCTCCTACTGATCAAGGTCGAGTC AGTTATTTTGAAGAAAATCCTGAGCTTTTTGCTGAATTGGTGAAACGAGATGCAGCTCGGAGGATGTTCACCAGGTTGGTGCTGGCGGGTGCTGCTTCAGCGTACGCTGGTGCCCTTTTCGTTGTGTCGTCTATGCGCGATAGCGTGAAGGAAGAGCTTCGCAAAAACATCTACGACTAGGAGCTCTATCGCCAGCTGGTGGCTACATATTTCTGTCTCTGTGTTATCTATGACTCTGCCCTGCTTATCATGGCTTGTTTAATGTAACATGGCATTTCCTACTAATCATCGATGTGTAACGTACCATCGTACTATAGTTGCACTCTATAATAGTTTGTGATGGTTGGTTGGTAGTAACGCCGTTACTTCATGGTATTTTTGGATAaaaa ] [+] EMBL CF331752 [ TTGTGTCGTCTATGCGCGATAGCGTGAAGGAAGAGCTTCGCAAAAACATCTACGACTAGGAGCTCTATCGCCAGCTGGTGGCTACATATTTCTGTTTTTTTTTTATCTATGACTCTGCCCTGCTTATCATGGCTTGTTTTTTTTTTCTTGGCATTTCCTACTAATCATCGATGTGTAACGTACCATCGTACTATAGTTGCACTCTATAATAGTTCGTGATGGTTGGTTGG ] consensusID : consensus_12187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 704 fasta sequence [AACGCGACGCGT-CTCGGCGAGTGAGAGGAGGAAGCAAACCCTAGCCGCCGTCGCAACCCTACTCTCGTTCGTCCGTACGTCGGTGGCATGGCGGCTATGGCGCTGCGCTCTCTCGTGAGGAAGGTCATGCCCGTCCCGGCTGCTCTCCGCCGGGCGCCGCCGTCATCGCGCTCCCTCCACCACCTCGAGGATAAGCTGCGTGGCACGACATCT-CCCAAGACTACAGCTCCTCCTGGCAATGGCAGGGGCAGCTATTTCAAAGACAATCATCCGACTTTTGCTGAATTGGTTCAACGAGATACAGATCGGAGGAGCTTCAACAGGATGTTGGTGGCAGGTTCTGC-TTCAGGCTATGCTGTTGCCCTTGTCATTATGTTATCTCTTCGCCGTAGTGTGAAGGAAGATCTTCGCAATAACATCTACGACTAGCAGCTTTACCCACCTGTCTAGGGGCTATTTATTTCTATTTTTGTGTGTGACTCTGTCTATAATGGCATGTGTTTAATGTGGCATGCATGTGACATGTCTTTATGTAAGACTAATTATCGGTGTAATGTATTGTTGTTGCACTCTAAAAATTGGTACCCTATATATCTGCTGTTTGCAAGTAGATGCTATGAAGTAACGATTTGTTATGGATGATCTGTACGCAACATTACTTAGGGTTTTTGGATGAGCTTAATTAGTTCTGTGTTTATAAAAAA] [+] EMBL CF326802 [AACGCGACGCGT CTCGGCGAGTGAGAGGAGGAAGCAAACCCTAGCCGCCGTCGCAACCCTACTCTCGTTCGTCCGTACGTCGGTGGCATGGCGGCTATGGCGCTGCGCTCTCTCGTGAGGAAGGTCATGCCCGTCCCGGCTGCTCTCCGCCGGGCGCCGCCGTCATCGCGCTCCCTCCACCACCTCGAGGATAAGCTGCGTGGCACGACATCT CCCAAGACTACAGCTCCTCCTGGCAATGGCAGGGGCAGCTATTTCAAAGACAATCATCCGACTTTTGCTGAATTGGTTCAACGAGATACAGATCGGAGGAGCTTCAACAGGATGTTGGTGGCAGGTTCTGC TTCAGGCTATGCTGTTGCCCTTGTCATTATGTTATCTCTTCGCCGTAGTGTGAAGGAAGATCTTCGCAATAACATCTACGACTAGCAGCTTTACCCACCTGTCTAGGGGCTATTTATTTCTATTTTTGTGTGTGACTCTGTCTATAATGGCATGTGTTTAATGTGGCATGCATGTGACATGTCTTTATGTAAGACTAA ] [+] EMBL CA766643 [ ACGCGT CTCGGCGAGTGAGAGGAGGAAGCAAACCCTAGCCGCCGTCGCAACCCTACTCTCGTTCGTCCGTACGTCGGTGGCATGGCGGCTATGGCGCTGCGCTCTCTCGTGAGGAAGGTCATGCCCGTCCCGGCTGCTCTCCGCCGGGCGCCGCCGTCATCGCGCTCCCTCCACCACCTCGAGGATAAGCTGCGTGGCACGACATCT CCCAAGACTACAGCTCCTCCTGGCAATGGCAGGGGCAGCTATTTCAAAGACAATCATCCGACTTTTGCTGAATTGGTTCAACGAGATACAGATCGGAGGAGCTTCAACAGGATGTTGGTGGCAGGTGCTGC TTCAGGCTATGCTGTTGCCCTTGTCATTATGTTATCTCTTCGCCGTAGTGTGAAGGAAGATCTTCGCAATAACATCTACGACTAGCAGCTTTACCCACCTGCCTAGGGGCTATTTATTTCTATTTTTGTGTGTGACTCTGCCTATAATGGCATGTGTTTAATGTGGCATGCATGTGACATGTC TTATGTAAGACTAATTATCGGTGTAATGTATTGTTGTTGCACTCTAAAA ] [+] EMBL C28100 [ ACG GTCCTCGGCGAGTGAGAGGAGGAAGCAAACCCTAGCCGCCGTCGCAACCCTACTCTCGTTCGTCCGTACGNCNGTGGCATGGCGGCTATGGCGCTGCGCTCTCTCGTGAGGAAGGTCATGCCCGTCCCGGCTGCTCTNCGNCGGGCGCCGCCGTCATCGCGCTCCCTGCACCACCTCGAGGATAAGCTGCGTGGCACGACATCT CCCAAGACTACAGCTCCTCCTGGCAATGGCAGGGGCAGCTATTTCAAAGACAATCATCCGACTTTTGCTGAATTGGTTCAACGAGATACAGATCGGAGGAGCTTCAACAGGATGTTTGTGGCAGGTGCTTCTTTCAGGCTATGCTngt ] [-] EMBL CF326803 [ GTGGCACGACATCTCCCCAAGACTACAGCTCCTCCTGGCAATGGCAGGGGCAGCTATTTCAAAGACAATCATCCGACTTTTGCTGAATTGGTTCAACGAGATACAGATCGGAGGAGCTTCAACAGGATGTTGGTGGCAGGTTCTGC TTCAGGCTATGCTGTTGCCCTTGTCATTATGTTATCTCTTCGCCGTAGTGTGAAGGAAGATCTTCGCAATAACATCTACGACTAGCAGCTTTACCCACCTGTCTAGGGGCTATTTATTTCTATTTTTGTGTGTGACTCTGTCTATAATGGCATGTGTTTAATGTGGCATGCATGTGACATGTCTTTATGTAAGACTAATTATCGGTGTAATGTATTGTTGTTGCACTCTATGCATTGGTACCCTATATATCTGCTGTTTGCAAGTAGATGCTATGAAGTAACGATTTGTTATGGATGATCTGTACGCAACATTACTTAGGGTTTTTGGATGAGCTTAATTAGTTCTGTGTTTATAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12187#0 AGGCGGAGAAAAACACAAGGC-TCTCAAGGAGAGAGAGAAAACCCTAGCTAGCTAGGCGC 59 consensus_12187#1 -----------AACGCGACGCGTCTCGGCGAGTGAGAGGAGGAAGCAAACC-CTAGCCGC 48 *** * * ** **** *** ***** * * **** *** consensus_12187#0 CGTCGCAACCTTGCTCCCGTCCGTCCGTACGTCGGAACGCAGCTATGGCGGCTGTGGCGC 119 consensus_12187#1 CGTCGCAACCCTACTCTCGTTCGTCCGTACGTCGGT-----GGCATGGCGGCTATGGCGC 103 ********** * *** *** ************** * ********* ****** consensus_12187#0 TGCGCTCTCTCGCAAGGAAGGCCATGCCCGCCCCGGCCACCCTCCGCCGGGCGCCGCCGC 179 consensus_12187#1 TGCGCTCTCTCGTGAGGAAGGTCATGCCCGTCCCGGCTGCTCTCCGCCGGGCGCCGCCGT 163 ************ ******* ******** ****** * ****************** consensus_12187#0 CATCGCGCTCCCTCCACCGCCACAGCCTCGAGGATAAGCTGCGTGGCACGACATCTCCCA 239 consensus_12187#1 CATCGCGCTCCCTCCACCACC------TCGAGGATAAGCTGCGTGGCACGACATCTCCCA 217 ****************** ** ********************************* consensus_12187#0 AGACTACAGCTCCTACTGATCAAGGTCGAGTCAGTTATTTTGAAGAAAATCCTGAGCTTT 299 consensus_12187#1 AGACTACAGCTCCTCCTGGCAATGGCAGGGGCAGCTATTTCAAAGACAATCATCCGACTT 277 ************** *** * ** * * *** ***** **** **** * * ** consensus_12187#0 TTGCTGAATTGGTGAAACGAGATGCAGCTCGGAGGATGTTCACCAGGTTGGTGCTGGCGG 359 consensus_12187#1 TTGCTGAATTGGTTCAACGAGATACAGATCGGAGGAGCTTCAACAGGATGTTGGTGGCAG 337 ************* ******** *** ******** **** **** ** ** **** * consensus_12187#0 GTGCTGCTTCAGCGTACGCTGGTGCCCTTTTCGTTGTGTCGTCTATGCGCGATAGCGTGA 419 consensus_12187#1 GTTCTGCTTCAGGCTATGCTGTTGCCCTTGTCATTATGTTATCTCTTCGCCGTAGTGTGA 397 ** ********* ** **** ******* ** ** *** *** * *** *** **** consensus_12187#0 AGGAAGAGCTTCGCAAAAACATCTACGACTAGGAGCTCTATCG--CCAGCTGGTGGCTAC 477 consensus_12187#1 AGGAAGATCTTCGCAATAACATCTACGACTAGCAGCTTTACCCACCTGTCTAGGGGCTAT 457 ******* ******** *************** **** ** * * ** * ***** consensus_12187#0 ATATTTCTGTCTCTGTGT-TATCTATGACTCTGCCC-----TGCTTATCATGGCTTGTTT 531 consensus_12187#1 TTATTTCTATTTTTGTGTGTGACTCTGTCTATAATGGCATGTGTTTAATGTGGCATGC-- 515 ******* * * ***** * ** ** ** * ** *** **** ** consensus_12187#0 AATGTAACATGGCATTTCCTA---CTAATCATCGATGTGTAACGTACCATCGTACTATAG 588 consensus_12187#1 -ATGTGACATGTCTTTATGTAAGACTAATTATCG--GTGTAATGTATTGTTGTTGCACTC 572 **** ***** * ** ** ***** **** ****** *** * ** * consensus_12187#0 TTGCACTCTATAATAGTTTGTGATGGTTGGTTGGTAGTA-ACGCCGTTACTTCATGGTAT 647 consensus_12187#1 TAAAAATTGGTACCC-TATATATCTGCTGTTTGCAAGTAGATGCTATGAAGTAACGATTT 631 * * * ** * * * * ** *** **** * ** * * * * * * * consensus_12187#0 TTT-TGGATAGACTG-GTGAATAGCCAATACGGTTTCTATAGTTTTGCTCTGTGATCAGT 705 consensus_12187#1 GTTATGGATGATCTGTACGCAACATTACTTAGGGTTTT-TGGATGAGCT---TAATTAGT 687 ** ***** *** * * * * ** ** * * * * *** * ** *** consensus_12187#0 TTAGTCCCTAAAAAAAA 722 consensus_12187#1 TCTGTGTTTATAAAAAA 704 * ** ** ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||