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Oryza sativa
cluster # 12204 cluster # 12204       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12204#0 length = 2116 sequences # 9  
consensus_12204#1 length = 323 sequences # 1  

consensusID : consensus_12204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2116
fasta sequence
                              [CCAAAGCCTCCGGCTCCACTCCAACTCCTCTCGCCTCCGCGGCTCCGCCCATTTCGCGGGTCGCCGGAGCAGCAGCAGCCGCCGCGCCAGATCTCGAACCTTCTAGAAGCTTCCGCCCGCTTCCACCCATCTCCCCCGAGGGCGCCTGGATCCCGAACCTTCTAGGCGTCGGCGGCCGGGGAAGGCGCGAGGGGAGGCGGACCACGGGATCTGCTTCGAAGCCCCTCGCCTCCTCTGGAACCTTCCGGGCGCGGCGCGGCGGGATGGCGAGTGCAAAAGTGTCGCACCCCGTTAAATCGGCCTCCGAGGAGTCCAAAGTACTCGTGGTGGAGAATGGGAAGATGGTTGATGTTCAGGACAAGGAAATCACCATGGAAGGCCTCTGTTCCATAAGTTCTTATGACCAGTGGGCACGGATCCCTGTTTCTGGACCGCTTCCGAAACCTCGCTACAAGCATGCAGCTGCTGTGGTTCAGGAAAAGATGTATGTTTTTGGTGGAAATCACAATGGCCGTTACCTTGGTGACATGCAGGTTCTGGATTTCAAATGTTTATCATGGTCGAAGCTAGAAGCTAAAATACAATCAGAAGAACCTTCAGACTTGACTGGAACAGCTTCGCTTCCTCCTTGTGCTGGTCATGCACTGGTTCCATGGGGAAACAAGATCCTCTGTCTTGCAGGACACACAAGGGAACCTACAGAAAGTCTCAGTGTTAAGGAGTTTGATCCACAAACTTGCACCTGGTCAACCTTGCGCACTTATGGCAGATCACCGAGCTCATGCGGTGGCCAATCAGTGACTCTTGTTGGAGGCACATTAGTAGTGTTTGGAGGTGAAGGTGATGGGAGATCCCTTCTGAATGACCTGCACGTTCTTGATCTCGAGACCATGACTTGGGATG-AATTTGAGACCACAGGCACACCCCCTTCTCCAAGGTCAGAGCATGCTGCTGCGTGCTATGCTGATCGTTATCTCTTGATATTTGGCGGGGGTTCTCATTCTACATGTTTCAGTGATCTACATCTCCTTGACATGCAGACGATGGAATGGTCAAGACCAGAACATCAGGGTATTACTCCCGAACCAAGAGCAGGGCATGCAGGTGTTACGGTTGGTGAGAACTGGTTTATTACTGGAGGTGGTAATAACAAGAAAGGTGTCCCAGAAACACTTGTACTTAACATGTCAACATTTGTATGGTCAGTCGTTACTGGTCTTGAAGGCCGTGCACCCCCAACAAGTGAGGGCTCAAGTTTAGTGCTGCACAAAGTTAATGGTGAAGATTTTCTGGTGTCATTTGGAGGATACAGTGGACGTTACAGTAATGAGATTTATGCTCTCAAGTCAAGTCGAAAGTCCGGTGTGCCATCTGGGCAACTAAATGAACCTGAAACAAATGGATTGGCCTCTGTGGCAGAAAATTCTAGCAGAGGGGTCATATTTGAAATTGAAGAACTTCAAGATGAAAAGACTATTAAGAGGGCAGATACAAGCAAAACTTTGTTGCAAGCAGTTAAGGGTGAGAAGAGTCATATAGAAGAAAAACTTAACCAGGAAGAGCTGCAGAGTTCCAGACTGAAGCAGGAATTAGCTAACGTGGAGACAAAAAATGTGGAACTTACCAAGGAACTTGACTTAGTCCGCAATCAACTTTCTGCTGAAGAAGCAAGGGCGTCGCAACTTGAGAACGAAATTTCGGATCTTCAACAAAGGCTGCAGAAGATGGAGACCCTGGAAAAGGAGTCCGAATCGCTTCGGCTTGAAAAGGATGCAGAGTCCGACGATTCATCTTCAGGCAGCAACCAGCGGCCTGCTGATAAGGGCTTCTGGAGGTGGAATGGATAAAAATTCATCGATACAGGTAGTAGCATACTAGCATTGGATGTATGGAGGATATTTCCTGCAGAGTTGCACATTCTTTCAATTTTTGCCCATTTCTTTTTTCCCCTGGAGAGCCCAGTATTCACAAGTAGATCAAATATCGAAAAATGTTTACTCACAGAGAAACAGGATGATAGCAAATCGCGGTTCCATCAAGAGAACTGATCAACCATGAGAAGAATTTAATAAAGTTTACAGGTGGTTCTATTTTTTTCNCCTCAAAAAAAAAAAAA]

[+] EMBL AK100499             [CCAAAGCCTCCGGCTCCACTCCAACTCCTCTCGCCTCCGCGGCTCCGCCCATTTCGCGGGTCGCCGGAGCAGCAGCAGCCGCCGCGCCAGATCTCGAACCTTCTAGAAGCTTCCGCCCGCTTCCACCCATCTCCCCCGAGGGCGCCTGGATCCCGAACCTTCTAGGCGTCGGCGGCCGGGGAAGGCGCGAGGGGAGGCGGACCACGGGATCTGCTTCGAAGCCCCTCGCCTCCTCTGGAACCTTCCGGGCGCGGCGCGGCGGGATGGCGAGTGCAAAAGTGTCGCACCCCGTTAAATCGGCCTCCGAGGAGTCCAAAGTACTCGTGGTGGAGAATGGGAAGATGGTTGATGTTCAGGACAAGGAAATCACCATGGAAGGCCTCTGTTCCATAAGTTCTTATGACCAGTGGGCACGGATCCCTGTTTCTGGACCGCTTCCGAAACCTCGCTACAAGCATGCAGCTGCTGTGGTTCAGGAAAAGATGTATGTTTTTGGTGGAAATCACAATGGCCGTTACCTTGGTGACATGCAGGTTCTGGATTTCAAATGTTTATCATGGTCGAAGCTAGAAGCTAAAATACAATCAGAAGAACCTTCAGACTTGACTGGAACAGCTTCGCTTCCTCCTTGTGCTGGTCATGCACTGGTTCCATGGGGAAACAAGATCCTCTGTCTTGCAGGACACACAAGGGAACCTACAGAAAGTCTCAGTGTTAAGGAGTTTGATCCACAAACTTGCACCTGGTCAACCTTGCGCACTTATGGCAGATCACCGAGCTCATGCGGTGGCCAATCAGTGACTCTTGTTGGAGGCACATTAGTAGTGTTTGGAGGTGAAGGTGATGGGAGATCCCTTCTGAATGACCTGCACGTTCTTGATCTCGAGACCATGACTTGGGATG AATTTGAGACCACAGGCACACCCCCTTCTCCAAGGTCAGAGCATGCTGCTGCGTGCTATGCTGATCGTTATCTCTTGATATTTGGCGGGGGTTCTCATTCTACATGTTTCAGTGATCTACATCTCCTTGACATGCAGACGATGGAATGGTCAAGACCAGAACATCAGGGTATTACTCCCGAACCAAGAGCAGGGCATGCAGGTGTTACGGTTGGTGAGAACTGGTTTATTACTGGAGGTGGTAATAACAAGAAAGGTGTCCCAGAAACACTTGTACTTAACATGTCAACATTTGTATGGTCAGTCGTTACTGGTCTTGAAGGCCGTGCACCCCCAACAAGTGAGGGCTCAAGTTTAGTGCTGCACAAAGTTAATGGTGAAGATTTTCTGGTGTCATTTGGAGGATACAGTGGACGTTACAGTAATGAGATTTATGCTCTCAAGTCAAGTCGAAAGTCCGGTGTGCCATCTGGGCAACTAAATGAACCTGAAACAAATGGATTGGCCTCTGTGGCAGAAAATTCTAGCAGAGGGGTCATATTTGAAATTGAAGAACTTCAAGATGAAAAGACTATTAAGAGGGCAGATACAAGCAAAACTTTGTTGCAAGCAGTTAAGGGTGAGAAGAGTCATATAGAAGAAAAACTTAACCAGGAAGAGCTGCAGAGTTCCAGACTGAAGCAGGAATTAGCTAACGTGGAGACAAAAAATGTGGAACTTACAAAGGAACTTGACTTAGTCCGCAATCAACTTTCTGCTGAAGAAGCAAGGGCGTCGCAACTTGAGAACGAAATTTCGGATCTTCAACAAAGGCTGCAGAAGATGGAGACCCTGGAAAAGGAGTCCGAATCGCTTCGGCTTGAAAAGGATGCAGAGTCCGACGATTCATCTTCAGGCAGCAACCAGCGGCCTGCTGATAAGGGCTTCTGGAGGTGGAATGGATAAAAATTCATCGATACAGGTAGTAGCATACTAGCATTGGATGTATGGAGGATATTTCCTGCAGAGTTGCACATTCTTTCAATTTTTGCCCATTTCTTTTTTCCCCTGGAGAGCCCAGTATTCACAAGTAGATCAAATATCGAAAAATGTTTACTCACAGAGAAACAGGATGATAGCAAATCGCGGTTCCATCAAGAGAACTGATCAACCATGAGAAGAATTTAATAAAGTTTACAGGTGGTTCT                           ]
[+] EMBL CF325096             [                                                   TTTCGCGGGTCGCCGGAGCAGCAGCAGCCGCCGCGCCAGATCTCGAACCTTCTAGAAGCTTCCGCCCGCTTCCACCCATCTCCCCCTTTGGCGCCTGGATCCCGAACCTTCTAGGCGTCGGCGGCCGGGGAAGGCGCGAGGGGAGGCGGACCACGGGATCTGCTTCGAAGCCCCTCGCCTCCTCTGGAACCTTCCGGGCGCGGCGCGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB618465             [                                                       GCGGGCCGCCGGAGCAGCAGCAGCCGCCGCGCCAGATCTCGAACCTTCTAGAAGCTTCCGCCCGCTTCCACCCATCTCCCCCGAGGGCGCCTGGATCCCGAACCTTCTAGGCGTCGGCGGCCGGGGAAGGCGCGAGGGGAGGCGGACCACGGGATCTGCTTCGAAGCCCCTCGCCTCCTCTGGAACCTTCCGGGCGCGGCGCGGCGGGATGGCGAGTGCAAAAGTGTCGCACCCCGTTAAATCGGCCTCCGAGGAGTCCAAAGTACTCGTGGTGGAGAATGGGAAGATGGTTGATGTTCAGGACAAGGAAATCACCATGGAAGGCCTCTGTTCCATAAGTTCTTATGACCAGTGGTCACGGATCCCTGTTTCTGGACCGCTTCCGAAACCTCGCTACAAGCATGCAGCTGCTGTGGTTCAGGAAAAGATGTATGTTTTTGGTGGAAATCACAATGGCCGTTACCTTGGTGACATGCAGGTTCTGGATTTCAAAAGTTTATCATGGTCGAAGCTAGAAGCTAAAATACAATCAGAAGAACCTTCAGACTTGACTGGAACAGCTTCGCTTCCTCCTTGTGCTGGTCATGCACTGGTTCCATGGGGAAACAAGATCCTCTGTCTTGCAGGACACACAAGGGAACCTACAGAAAGTCTCAGTGTTAAGGAGTTTGATCCACAAACTTGCACCTGGTCAACCTTGCGCACTTATGGCAGATCACCGAGCTCATGCGGTGGCCAATCAGTGACTCTTGTTGGAGGCACATTAGTAGTGTTTGGAGGTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSC111931            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ccGAAGCTAAAATACAATCAGAAGAACCTTCAGACTTGACTGGAACAGCTTCGCTTCCTCCTTGTGCTGGTCATGCACTGGTTCCATGGGGAAACAAGATCCTCTGTCTTGCAGGACACACAAGGGAACCTACAGAAAGTCTCAGTGTTAAGGAGTTTGATCCACAAACTTGCACCTGGTCAACCTTGCGCACTTATGGCAGATCACCGAGCTCATGCGGTGGCCAATCAGTGACTCTTGTTGGAGGCACATTAGTAGTGTTTGGAGGTGAAGGTGATGGGAGATCCCTTCTGAATGACCTGCACGTTCTTGATCTCGAGACCATGATTTGGGATGNATTTTGAGACCACAGGCACAACCCCTTCTTCAAGGTCAGAGCATTCTGCTGCGTNCTATGCTGATCGTanntc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU031007             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          gnACACAAGGGAACCNACAGAAAGTCTCAGTGTTAAGGAGTTTGATCCACAAACTTGCACCNGGTCAACCTTGCGCACTTATGGCAGATCACCGAGCTCATGCGGTGGCCAATCAGTGACTCTTGTTGGAGGCACATTAGTAGTGTTTGGAGGTGAAGGTGATGGGAGATCCCTTCTGAATGACCTGCACGTTCTTGATCTCGAGACCATGACTTGGGATG AATTTGAGACCACAGGCACACCCCCTTCTCCAAGGTCAGAGCATGCTGCTGCGTGCTATGCTGATCGTTATCTCTTGATATTTGGCGGGGGTTCTCATTCTACATGTTTCAGTGATCTACATCTCCTTGACATGCAGACGATGGAATGGTCAAGACCAGAACATCAGGGTATTACNCCCGAACCAAGAGCAGGGCATGCAGGTGTTACGGTTGGTGAGAACn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB618466             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGACGTTACAGTAATGAGATTTATGCTCTCAAGTCAAGTCGAAAGTCCGGTGTGCCATCTGGGCAACTAAATGAACCTGAAACAAATGGATTGGCCTCTGTGGCAGAAAATTCTAGCAGAGGGGTCATATTTGAAATTGAAGAACTTCAAGATGAAAAGACTATTAAGAGGGCAGATACAAGCAAAACTTTGTTGCAAGCAGTTAAGGGTGAGAAGAGTCATATAGAAGAAAAACTTAACCAGGAAGAGCTGCAGAGTTCCAGACTGAAGCAGGAATTAGCTAACGTGGAGACAAAAAATGTGGAACTTACCAAGGAACTTGACTTAGTCCGCAATCAACTTTCTGCTGAAGAAGCAAGGGCGTCGCAACTTGAGAACGAAATTTCGGATCTTCAACAAAGGCTGCAGAAGATGGAGACCCTGGAAAAGGAGTCCGAATCGCTTCGGCTTGAAAAGGATGCAGAGTCCGACGATTCATCTTCAGGCAGCAACCAGCGGCCTGCTGATAAGGGCTTCTGGAGGTGGAATGGATAAAAATTCATCGATACAGGTAGTAGCATACTAGCATTGGATGTATGGAGGATATTTCCTGTAGAGTTGCACATTCTTTCAATTTTTGCCCATTTCTTTTTTCCCCTGGAGAGCCCAGTATTCACAAGTAGATCAAATATCGAAAAATGTTTACTCACAGAGAAACAGGATGATAGCAAATCGCGGTTCCATCAAGAGAACAGAGCAACCATGAGAAAAATTTAATAAAGTTTACAGGTGGAAGTGTTTT                      ]
[+] EMBL AK062200             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATTAAGAGGGCAGATACAAGCAAAACTTTGTTGCAAGCAGTTAAGGGTGAGAAGAGTCATATAGAAGAAAAACTTAACCAGGAAGAGCTGCAGAGTTCCAGACTGAAGCAGGAATTAGCTAACGTGGAGACAAAAAATGTGGAACTTACCAAGGAACTTGACTTAGTCCGCAATCAACTTTCTGCTGAAGAAGCAAGGGCGTCGCAACTTGAGAACGAAATTTCGGATCTTCAACAAAGGCTGCAGAAGATGGAGACCCTGGAAAAGGAGTCCGAATCGCTTCGGCTTGAAAAGGATGCAGAGTCCGACGATTCATCTTCAGGCAGCAACCAGCGGCCTGCTGATAAGGGCTTCTGGAGGTGGAATGGATAAAAATTCATCGATACAGGTAGTAGCATACTAGCATTGGATGTATGGAGGATATTTCCTGCAGAGTTGCACATTCTTTCAATTTTTGCCCATTTCTTTTTTCCCCTGGAGAGCCCAGTATTCACAAGTAGATCAAATATCGAAAAATGTTTACTCACAGAGAAACAGGATGATAGCAAATCGCGGTTCCATCAAGAGAACTGATCAACCATGAGAAGAATTTAATAAAGTTTACAGGTGGTTC                            ]
[-] EMBL CB683601             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAAAACTTACCCAGGAAGAGCTGCAGAGTTCCAGACTGAACCAGGAATTAGCTAACGTGGAGACAAAAAATGTGGAACTTCCCAAGGAACTTGACTTAGTCCGCAATCAACTTTTTGCTGAAGAAGCAAGGGGGTCGCAACTTGAGAACGAAATTTCGGATTTTCAACAAAGGCTGCAGAAGATGGAGACCCTGGAAAAGGAGTCCGAATCGCTTCGGCTTGAAAAGGATGCAGAGTCCGAGGATTCATTTTCAGGCAGCAACCAGCGGCCTGCTGATAAGGGCTTTTGGAGGTGGAATGGATAAAAATTCATCGATACAGGTAGTAGCATACTAGCATTGGATGTATGGAGGATATTTCCTGCAGAGTTGCACATTCTTTCAATTTTTGCCCATTTCTTTTTTCCCCTGGAGAGCCCAGTATTCACAAGTAGATCAAATATCGAAAAATGTTTACTCCCAGAGAAACAGGATGATAGCAAATCGCGGTTCCATCAAGAGAACTGATCACCCATGAGAAGAATTTAATAAAATTTCCAGGTGGTTtaaaga                       ]
[+] EMBL AU166342             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACGAAATTTCGGATCTTCAACAAAGGCTGCAGAAGATGGAGACCCTGGAAAAGGAGTCCGAATCGCTTCGGCTTGAAAAGGATGCAGAGTCCGACGATTCATCTTCAGGCAGCAACCAGCGGCCTGCTGATAAGGGCTTCTGGAGGTGGAATGGATAAAAATTCATCGATACAGGTAGTAGCATACTAGCATTGGATGTATGGAGGATATTTCCTGCAGAGTTGCACATTCTTTCAATTTTTGCCCATTTCTTTTTTCCCCTGGAGAGCCCAGTATTCNCAAGTAGATCAAATATCGAAAAATGTTTACTCACAGAGAAACAGGATGATAGCAAATCGCGGTTCCATCAAGAGAACTGATCAACCATGAGAAGAATTTAATAAAGTTTACAGGTGGTTCTATTTTTTTCNCCTCAAAAAAAAAAAAA]


>consensus_12204#0 CCAAAGCCTCCGGCTCCACTCCAACTCCTCTCGCCTCCGCGGCTCCGCCCATTTCGCGGG TCGCCGGAGCAGCAGCAGCCGCCGCGCCAGATCTCGAACCTTCTAGAAGCTTCCGCCCGC TTCCACCCATCTCCCCCGAGGGCGCCTGGATCCCGAACCTTCTAGGCGTCGGCGGCCGGG GAAGGCGCGAGGGGAGGCGGACCACGGGATCTGCTTCGAAGCCCCTCGCCTCCTCTGGAA CCTTCCGGGCGCGGCGCGGCGGGATGGCGAGTGCAAAAGTGTCGCACCCCGTTAAATCGG CCTCCGAGGAGTCCAAAGTACTCGTGGTGGAGAATGGGAAGATGGTTGATGTTCAGGACA AGGAAATCACCATGGAAGGCCTCTGTTCCATAAGTTCTTATGACCAGTGGGCACGGATCC CTGTTTCTGGACCGCTTCCGAAACCTCGCTACAAGCATGCAGCTGCTGTGGTTCAGGAAA AGATGTATGTTTTTGGTGGAAATCACAATGGCCGTTACCTTGGTGACATGCAGGTTCTGG ATTTCAAATGTTTATCATGGTCGAAGCTAGAAGCTAAAATACAATCAGAAGAACCTTCAG ACTTGACTGGAACAGCTTCGCTTCCTCCTTGTGCTGGTCATGCACTGGTTCCATGGGGAA ACAAGATCCTCTGTCTTGCAGGACACACAAGGGAACCTACAGAAAGTCTCAGTGTTAAGG AGTTTGATCCACAAACTTGCACCTGGTCAACCTTGCGCACTTATGGCAGATCACCGAGCT CATGCGGTGGCCAATCAGTGACTCTTGTTGGAGGCACATTAGTAGTGTTTGGAGGTGAAG GTGATGGGAGATCCCTTCTGAATGACCTGCACGTTCTTGATCTCGAGACCATGACTTGGG ATGAATTTGAGACCACAGGCACACCCCCTTCTCCAAGGTCAGAGCATGCTGCTGCGTGCT ATGCTGATCGTTATCTCTTGATATTTGGCGGGGGTTCTCATTCTACATGTTTCAGTGATC TACATCTCCTTGACATGCAGACGATGGAATGGTCAAGACCAGAACATCAGGGTATTACTC CCGAACCAAGAGCAGGGCATGCAGGTGTTACGGTTGGTGAGAACTGGTTTATTACTGGAG GTGGTAATAACAAGAAAGGTGTCCCAGAAACACTTGTACTTAACATGTCAACATTTGTAT GGTCAGTCGTTACTGGTCTTGAAGGCCGTGCACCCCCAACAAGTGAGGGCTCAAGTTTAG TGCTGCACAAAGTTAATGGTGAAGATTTTCTGGTGTCATTTGGAGGATACAGTGGACGTT ACAGTAATGAGATTTATGCTCTCAAGTCAAGTCGAAAGTCCGGTGTGCCATCTGGGCAAC TAAATGAACCTGAAACAAATGGATTGGCCTCTGTGGCAGAAAATTCTAGCAGAGGGGTCA TATTTGAAATTGAAGAACTTCAAGATGAAAAGACTATTAAGAGGGCAGATACAAGCAAAA CTTTGTTGCAAGCAGTTAAGGGTGAGAAGAGTCATATAGAAGAAAAACTTAACCAGGAAG AGCTGCAGAGTTCCAGACTGAAGCAGGAATTAGCTAACGTGGAGACAAAAAATGTGGAAC TTACCAAGGAACTTGACTTAGTCCGCAATCAACTTTCTGCTGAAGAAGCAAGGGCGTCGC AACTTGAGAACGAAATTTCGGATCTTCAACAAAGGCTGCAGAAGATGGAGACCCTGGAAA AGGAGTCCGAATCGCTTCGGCTTGAAAAGGATGCAGAGTCCGACGATTCATCTTCAGGCA GCAACCAGCGGCCTGCTGATAAGGGCTTCTGGAGGTGGAATGGATAAAAATTCATCGATA CAGGTAGTAGCATACTAGCATTGGATGTATGGAGGATATTTCCTGCAGAGTTGCACATTC TTTCAATTTTTGCCCATTTCTTTTTTCCCCTGGAGAGCCCAGTATTCACAAGTAGATCAA ATATCGAAAAATGTTTACTCACAGAGAAACAGGATGATAGCAAATCGCGGTTCCATCAAG AGAACTGATCAACCATGAGAAGAATTTAATAAAGTTTACAGGTGGTTCTATTTTTTTCNC CTCAAAAAAAAAAAAA



consensusID : consensus_12204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence
                              [GAGAAGAGTCATATAGAAGAAAAACTTAACCNGGAAGAGCTGCAGAGTTCCAGACTGAAGCAGGAATTAGCTAACGTGGAGACAAAAAATGTGGAACTTACCAAGGCAAGCTGAATTGTTTTTATAGAATTGTGCAGGAAATGTGATGCTTTTTTCTTTCATTTTACTATCAGAAGTTATGTCTCTACCTATTTCTTATGCATGGGCTACAATTTTCCATTTAAGTTCATTTGATATTTAAGGCTCAATTGTATGCAATTCAGAAAAATATTTATCAAAGCAATGTATGATGTACCTCNGTGAAATTTGTTGCTCAAAAAAAA]

[+] EMBL AU095190             [GAGAAGAGTCATATAGAAGAAAAACTTAACCNGGAAGAGCTGCAGAGTTCCAGACTGAAGCAGGAATTAGCTAACGTGGAGACAAAAAATGTGGAACTTACCAAGGCAAGCTGAATTGTTTTTATAGAATTGTGCAGGAAATGTGATGCTTTTTTCTTTCATTTTACTATCAGAAGTTATGTCTCTACCTATTTCTTATGCATGGGCTACAATTTTCCATTTAAGTTCATTTGATATTTAAGGCTCAATTGTATGCAATTCAGAAAAATATTTATCAAAGCAATGTATGATGTACCTCNGTGAAATTTGTTGCTCAAAAAAAA]


>consensus_12204#1 GAGAAGAGTCATATAGAAGAAAAACTTAACCNGGAAGAGCTGCAGAGTTCCAGACTGAAG CAGGAATTAGCTAACGTGGAGACAAAAAATGTGGAACTTACCAAGGCAAGCTGAATTGTT TTTATAGAATTGTGCAGGAAATGTGATGCTTTTTTCTTTCATTTTACTATCAGAAGTTAT GTCTCTACCTATTTCTTATGCATGGGCTACAATTTTCCATTTAAGTTCATTTGATATTTA AGGCTCAATTGTATGCAATTCAGAAAAATATTTATCAAAGCAATGTATGATGTACCTCNG TGAAATTTGTTGCTCAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12204#0      CCAAAGCCTCCGGCTCCACTCCAACTCCTCTCGCCTCCGCGGCTCCGCCCATTTCGCGGG 60
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      TCGCCGGAGCAGCAGCAGCCGCCGCGCCAGATCTCGAACCTTCTAGAAGCTTCCGCCCGC 120
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      TTCCACCCATCTCCCCCGAGGGCGCCTGGATCCCGAACCTTCTAGGCGTCGGCGGCCGGG 180
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      GAAGGCGCGAGGGGAGGCGGACCACGGGATCTGCTTCGAAGCCCCTCGCCTCCTCTGGAA 240
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      CCTTCCGGGCGCGGCGCGGCGGGATGGCGAGTGCAAAAGTGTCGCACCCCGTTAAATCGG 300
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      CCTCCGAGGAGTCCAAAGTACTCGTGGTGGAGAATGGGAAGATGGTTGATGTTCAGGACA 360
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      AGGAAATCACCATGGAAGGCCTCTGTTCCATAAGTTCTTATGACCAGTGGGCACGGATCC 420
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      CTGTTTCTGGACCGCTTCCGAAACCTCGCTACAAGCATGCAGCTGCTGTGGTTCAGGAAA 480
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      AGATGTATGTTTTTGGTGGAAATCACAATGGCCGTTACCTTGGTGACATGCAGGTTCTGG 540
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      ATTTCAAATGTTTATCATGGTCGAAGCTAGAAGCTAAAATACAATCAGAAGAACCTTCAG 600
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      ACTTGACTGGAACAGCTTCGCTTCCTCCTTGTGCTGGTCATGCACTGGTTCCATGGGGAA 660
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      ACAAGATCCTCTGTCTTGCAGGACACACAAGGGAACCTACAGAAAGTCTCAGTGTTAAGG 720
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      AGTTTGATCCACAAACTTGCACCTGGTCAACCTTGCGCACTTATGGCAGATCACCGAGCT 780
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      CATGCGGTGGCCAATCAGTGACTCTTGTTGGAGGCACATTAGTAGTGTTTGGAGGTGAAG 840
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      GTGATGGGAGATCCCTTCTGAATGACCTGCACGTTCTTGATCTCGAGACCATGACTTGGG 900
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      ATGAATTTGAGACCACAGGCACACCCCCTTCTCCAAGGTCAGAGCATGCTGCTGCGTGCT 960
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      ATGCTGATCGTTATCTCTTGATATTTGGCGGGGGTTCTCATTCTACATGTTTCAGTGATC 1020
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      TACATCTCCTTGACATGCAGACGATGGAATGGTCAAGACCAGAACATCAGGGTATTACTC 1080
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      CCGAACCAAGAGCAGGGCATGCAGGTGTTACGGTTGGTGAGAACTGGTTTATTACTGGAG 1140
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      GTGGTAATAACAAGAAAGGTGTCCCAGAAACACTTGTACTTAACATGTCAACATTTGTAT 1200
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      GGTCAGTCGTTACTGGTCTTGAAGGCCGTGCACCCCCAACAAGTGAGGGCTCAAGTTTAG 1260
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      TGCTGCACAAAGTTAATGGTGAAGATTTTCTGGTGTCATTTGGAGGATACAGTGGACGTT 1320
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      ACAGTAATGAGATTTATGCTCTCAAGTCAAGTCGAAAGTCCGGTGTGCCATCTGGGCAAC 1380
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      TAAATGAACCTGAAACAAATGGATTGGCCTCTGTGGCAGAAAATTCTAGCAGAGGGGTCA 1440
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      TATTTGAAATTGAAGAACTTCAAGATGAAAAGACTATTAAGAGGGCAGATACAAGCAAAA 1500
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      CTTTGTTGCAAGCAGTTAAGGGTGAGAAGAGTCATATAGAAGAAAAACTTAACCAGGAAG 1560
consensus_12204#1      -----------------------GAGAAGAGTCATATAGAAGAAAAACTTAACCNGGAAG 37
                                              ******************************* *****

consensus_12204#0      AGCTGCAGAGTTCCAGACTGAAGCAGGAATTAGCTAACGTGGAGACAAAAAATGTGGAAC 1620
consensus_12204#1      AGCTGCAGAGTTCCAGACTGAAGCAGGAATTAGCTAACGTGGAGACAAAAAATGTGGAAC 97
                       ************************************************************

consensus_12204#0      TTACCAAGG-AACTTGACTTAGTCCGCAATCAACTTTCTGCTGAAGAAGCAAGGGCGTCG 1679
consensus_12204#1      TTACCAAGGCAAGCTGAATT-GTTTTTA--TAGAATTGTGCAGGAAATGTGATGCTTTTT 154
                       ********* **  *** ** **    *   *   ** *** * * * *  * *   *  

consensus_12204#0      CAACTTGAGAACGAAATTTCGGATCTTCAACAAAGGCTGCAGAAGATGGAGACCCTGGAA 1739
consensus_12204#1      TC--------------TTTCATTTTACTATCAGAAGTTATGTCTCTACCTATTTCTTATG 200
                                       ****   *    * ** * * *                **    

consensus_12204#0      AAGGAGTCCGAATCGCTTCGGCTTGAAAAGGATGCAGAGTCCGACGATTCATCTTCAGGC 1799
consensus_12204#1      CATGGGCTACAAT--TTTCCATTT-AAGTTCATTTGATATTTAA-GGCTCAATTGTATGC 256
                        * * *    ***   ***   ** **    **      *   * *  ***  *  * **

consensus_12204#0      AGCAACCAGCGGCCTGCTGATAAGGGCTTCTGGAGGTGGAATGGATAAAAATTCATCGAT 1859
consensus_12204#1      AAT--TCAGAAAAATATTTATCAAAGCAATGTATGATGTACCTCNGTGAAATTTGTTGCT 314
                       *     ***     *  * ** *  **       * ** *        *****  * * *

consensus_12204#0      ACAGGTAGTAGCATACTAGCATTGGATGTATGGAGGATATTTCCTGCAGAGTTGCACATT 1919
consensus_12204#1      -CAAAAAAAA-------------------------------------------------- 323
                        **   *  *                                                  

consensus_12204#0      CTTTCAATTTTTGCCCATTTCTTTTTTCCCCTGGAGAGCCCAGTATTCACAAGTAGATCA 1979
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      AATATCGAAAAATGTTTACTCACAGAGAAACAGGATGATAGCAAATCGCGGTTCCATCAA 2039
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      GAGAACTGATCAACCATGAGAAGAATTTAATAAAGTTTACAGGTGGTTCTATTTTTTTCN 2099
consensus_12204#1      ------------------------------------------------------------
                                                                                   

consensus_12204#0      CCTCAAAAAAAAAAAAA 2116
consensus_12204#1      -----------------
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)