These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1116 fasta sequence [CATTCCATTCCATTCCATTCCTTTCCTTTCTCTCTCCTCCCCCTCGCGCCATTAAGGCTCCAGAGCTTTCTCCCTCTTCACTTGGGGGGGACTGGAAGAAGAGGAGGAGCTCGGCTCGAGGCCCCAAGAATCGAGTTCGTCGGAGGCGGCGGATGCCGGAGAGGTCCGAGCTGGGGCGGCAGCTCCCGCTGAGAGGGCCCCTCAAGGCACTGGAGGCCGACATCCACCATGCCAACACCATGGCTAATGCTATCCAGAGGAACTATGGTGGAGCATGTGTGCAGATGA-GGTTGTCGTGCAGCTCACTGGCGCCATTCTTTCTTTACCTCATCCAGTGGCTGGATTGTGGCTGCTGTTATGCTCTTCCCA-GTTATCTAGGCCTTTTTCACATTCTCATTTGCAAGGTTTATGCAGATGGAGATAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGCGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGGACCTGA-AAGGGAAAGGGCGATGTAAAGACATAGTGAGTAGGAAGCGGCTCGAAGATTGGAGGAAGCTTTGTAACAAGGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTTGTAGATTTTTCTTTGTTAGAGCTTAGAAGGATGGTCTTTCCACCTCTGACAAAACACCTTTTACTTTAGTGTAGCTGCATAACACTTCTAAAGCAACTGTAAATAAAATCTGCAGGTGAAGTTCATTGAA--AAAAAAATAAAAAAAAA] [+] EMBL AK067254 [CATTCCATTCCATTCCATTCCTTTCCTTTCTCTCTCCTCCCCCTCGCGCCATTAAGGCTCCAGAGCTTTCTCCCTCTTCACTTGGGGGGGACTGGAAGAAGAGGAGGAGCTCGGCTCGAGGCCCCAAGAATCGAGTTCGTCGGAGGCGGCGGATGCCGGAGAGGTCCGAGCTGGGGCGGCAGCTCCCGCTGAGAGGGCCCCTCAAGGCACTGGAGGCCGACATCCACCATGCCAACACCATGGCTAATGCTATCCAGAGGAACTATGGTGGAGCATGTGTGCAGATGA GGTTGTCGTGCAGCTCACTGGCGCCATTCTTTCTTTACCTCATCCAGTGGCTGGATTGTGGCTGCTGTTATGCTCTTCCCA GTTATCTAGGCCTTTTTCACATTCTCATTTGCAAGGTTTATGCAGATGGAGATAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGCGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGGACCTGA AAGGGAAAGGGCGATGTAAAGACATAGTGAGTAGGAAGCGGCTCGAAGATTGGAGGAAGCTTTGTAACAAGGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCAAGGAAGCCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTTGTAGATTTTTCTTTGTTAGAGCTTAGAAGGATGGTCTTTCCACCTCTGACAAAACACCTTTTACTTTAGTGTAGCTGCATAACACTTCTAAAGCAACTGTAAATAAAATCTGCAGGTGA ] [+] EMBL CF337915 [CATTCCATTCCATTCCATTCCTTTCCTTTCTCTCTCCTCCCCCTCGCGCCATTAAGGCTCCAGAGCTTTCTCCCTCTTCACTTGGGGGGGACTGGAAGAAGAGGAGGAGCTCGGCTCGAGGCCCCAAGAATCGAGTTCGTCGGAGGCGGCGGATGCCGGAGAGGTCCGAGCTGGGGCGGCAGCTCCCGCTGAGAGGGCCCCTCAAGGCACTGGAGGCCGACATCCACCATGCCAACACCATGGCTAATGCTATCCAGAGGAACTATGGTGGAGCATGTGTGCAGATGAGGGTTGTCGTGCAGCTCACTGGCGCCATTCTTTCTTTACCTCATCCAGTGGCTGGATTGTGGCTGCTGTTATGCTCTTCCCA GTTATCTAGGCCTTTTTCACATTCTCATTTGCAAGGTTTATGCAGATGGAGATAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGCGATCATCT ] [+] EMBL CF314089 [ CCATTCCTTTCCTTTCTCTCTCCTCCCCCTCGCGCCATTAAGGCTCCAGAGCTTTCTCCCTCTTCACTTGGGGGGGACTGGAAGAAGAGGAGGAGCTCGGCTCGAGGCCCCAAGAATCGAGTTCGTCGGAGGCGGCGGATGCCGGAGAGGTCCGAGCTGGGGCGGCAGCTCCCGCTGAGAGGGCCCCTCAAGGCACTGGAGGCCGACATCCACCATGCCAACACCATGGCTAATGCTATCCAGAGGAACTATGGTGGAGCATGTGTGCAGATGA GGTTGTCGTGCAGCTCACTGGCGCCATTCTTTCTTTACCTCATCCAGTGGCTGGATTGTGGCTGCTGTTATGCTCTTCCCA GTTATCTAGGCCTTTTTCACATTCTCATTTGCAAGGTTTATGCAGATGGAGATAGCTCAGTATCAACGTATGAAAGGCGTGCAGGCCTTAGAGAATTCTATGCGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGGACCTGA AAGGGAAAGGGCGATGTAAAGACATAGTGAGTAGGAAGCGGCTCGAAGATTGG ] [+] EMBL CF313015 [ CCTTTCTCTCTCCTCCCCCTCGCGCCATTAAGGCTCCAGAGCTTTCTCCCTCTTCACTTGGGGGGGACTGGAAGAAGAGGAGGAGCTCGGCTCGAGGCCCCAAGAATCGAGTTCGTCGGAGGCGGCGGATGCCGGAGAGGTCCGAGCTGGGGCGGCAGCTCCCGCTGAGAGGGCCCCTCAAGGCACTGGAGGCCGACATCCACCATGCCAACACCATGGCTAATGCTATCCAGAGGAACTATGGTGGAGCATGTGTGCAGATGA GGTTGTCGTGCAGCTCACTGGCGCCATTCTTTCTTTACCTCATCCAGTGGCTGGATTGTGGCTGCTGTTATGCTCTTCCCA GTTATCTAGGCCTTTTTCACATTCTCATTTGCAAGGTTTATGCAGATGGAGATAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGCGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGGACCTGA AAGGGAAAGGGCGATGTAAAG ] [-] EMBL CF313016 [ AGGAACTATGGTGGAGCATGTGTGCAGATGA GGTTGTCGTGCAGCTCACTGGCGCCATTCTTTCTTTACCTCATCCAGTGGCTGGATTGTGGCTGCTGTTATGCTCTTCCCACGTTATCTAGGCCTTTTTCACATTCTCATTTGCAAGGTTTATGCAGATGGAGATAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGCGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGGACCTGA AAGGGAAAGGGCGATGTAAAGACATAGTGAGTAGGAAGCGGCCCGAAGATTGGAGGAAGCTTTGTAACAAGGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTTGTAGAaaaaaa ] [-] EMBL CF337916 [ GAGGGTAGTTTGATTGAGAGGGACCTGA AAGGGAAAGGGCGATGTAAAGACATAGTGAGTAGGAAGCGGCTCGAAGATTGGAGGAAGCTTTGTAACAAGGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTTGTAGATTTTTCTTTGTTAGAGCTTAGAAGGATGGTCTTTCCACCTCTGACAAAACACCTTTTACTTTAGTGTAGCTGCATAACACTTCTAAAGCAACTGTAAATAAAATCTGCAGGTGAAGTTCATTGAA AAAA ] [+] EMBL CA767256 [ gaGGACGAGACAAGGGGAAGGGCGATGTAAAGACATAGTGAGTAGGAAGCGGCTCGAAGATTGGAGGAAGCTTTGTAACAAGGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGGTGTAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTTGTAGATTTTTCTTTGTTAGAGCTTAGAAGGATGGTCTTTCCACCTCTGACAAAACACCTTTTACTTTAGTGTAGCTGCATAACACTTCTAAAGCAACTGTAAATAAAATCTGCAGGTGAAGTTCATTG ] [-] EMBL OSA420719 [ AGGGCGATGTAAAGACATAGTGAGTAGGAAGCGGCTCGAAGATTGGAGGAAGCTTTGTAACAAGGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATTCGCTCAAGGGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTTGTAGATTTTTCTTTGTTAGAGCTTAGAAGGATGGTCTTTCCACCTCTGACAAAACACCTTTTACTTTAGTGTAGCTGCATAACA ] [-] EMBL CF314090 [ CATGCAATGTGCATAAAATGCTACAGGGACTGGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAAAAGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTTGTAGATTTTTCTTTGTTAGAGCTTAGAAGGATGGTCTTTCCACCTCTGACAAAACACCTTTTACTTTAGTGTAGGTGCATAACACTTCCCAAGCAA AAAAAAAAAATTTGCAGGTGAAGTTCATTGTATTAAAAAAATAAAAAAAAA] consensusID : consensus_12206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [AGATTTCTAGCGATCATCTACCTATCCTTCAACAGTCTTGAGGTAGTTTGATTGAGAGGGCACCTGAAAGGGAAAGGCCGATGTAAAGACATAGTGAGTAGGAACGGCCTCGAAGATTGGAGGAAGCCTTTGTAACAAGGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTCCAGTCATCCAATGTGCATAAAATGCTACAGGGACTGTCAAAGGATGTATGTATGTATGTATGTATGTATGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAACCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAACCGGAGAAACCCATTTTGTAAAAAAAAAA] [+] EMBL BI803271 [AGATTTCTAGCGATCATCTACCTATCCTTCAACAGTCTTGAGGTAGTTTGATTGAGAGGGCACCTGAAAGGGAAAGGCCGATGTAAAGACATAGTGAGTAGGAACGGCCTCGAAGATTGGAGGAAGCCTTTGTAACAAGGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTCCAGTCATCCAATGTGCATAAAATGCTACAGGGACTGTCAAAGGATGTATGTATGTATGTATGTATGTATGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAACCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAACCGGAGAAACCCATTTTGTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12206#0 CATTCCATTCCATTCCATTCCTTTCCTTTCTCTCTCCTCCCCCTCGCGCCATTAAGGCTC 60 consensus_12206#1 ------------------------------------------------------------ consensus_12206#0 CAGAGCTTTCTCCCTCTTCACTTGGGGGGGACTGGAAGAAGAGGAGGAGCTCGGCTCGAG 120 consensus_12206#1 ------------------------------------------------------------ consensus_12206#0 GCCCCAAGAATCGAGTTCGTCGGAGGCGGCGGATGCCGGAGAGGTCCGAGCTGGGGCGGC 180 consensus_12206#1 ------------------------------------------------------------ consensus_12206#0 AGCTCCCGCTGAGAGGGCCCCTCAAGGCACTGGAGGCCGACATCCACCATGCCAACACCA 240 consensus_12206#1 ------------------------------------------------------------ consensus_12206#0 TGGCTAATGCTATCCAGAGGAACTATGGTGGAGCATGTGTGCAGATGAGGTTGTCGTGCA 300 consensus_12206#1 ------------------------------------------------------------ consensus_12206#0 GCTCACTGGCGCCATTCTTTCTTTACCTCATCCAGTGGCTGGATTGTGGCTGCTGTTATG 360 consensus_12206#1 ------------------------------------------------------------ consensus_12206#0 CTCTTCCCAGTTATCTAGGCCTTTTTCACATTCTCATTTGCAAGGTTTATGCAGATGGAG 420 consensus_12206#1 ------------------------------------------------------------ consensus_12206#0 ATAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGCGATCATCT 480 consensus_12206#1 ----------------------------------------AGATTTCTA-GCGATCATCT 19 *** ***** ********** consensus_12206#0 ACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGG-ACCTGAAAGGGAAAGGG 539 consensus_12206#1 ACC-TATCCTTCAACAGTCTTGAGGTAGTTTGATTGAGAGGGCACCTGAAAGGGAAAGGC 78 *** ************* * ******************* **************** consensus_12206#0 CGATGTAAAGACATAGTGAGTAGGAAGCGGCTCGAAGATTGGAGGAAGC-TTTGTAACAA 598 consensus_12206#1 CGATGTAAAGACATAGTGAGTAGGAACGGCCTCGAAGATTGGAGGAAGCCTTTGTAACAA 138 ************************** * ******************* ********** consensus_12206#0 GGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCT 658 consensus_12206#1 GGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCT 198 ************************************************************ consensus_12206#0 GCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTG--------------- 703 consensus_12206#1 GCCTAATTCCAGTCATCCAATGTGCATAAAATGCTACAGGGACTGTCAAAGGATGTATGT 258 ******** ******* **************************** consensus_12206#0 ------------------GTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCT 745 consensus_12206#1 ATGTATGTATGTATGTATGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAA-CCT 317 ************************************** *** consensus_12206#0 TAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCC 805 consensus_12206#1 TAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACA-TGATGTGGTTGATCC 376 ******************************************** *************** consensus_12206#0 TGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCT 865 consensus_12206#1 TGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCT 436 ************************************************************ consensus_12206#0 TATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACAC 925 consensus_12206#1 TATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACAC 496 ************************************************************ consensus_12206#0 CACAAGTTGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTT-GTAGATTTTTCTTTG 984 consensus_12206#1 CACAAGTTGTGTGTGTGAAATTATGAAACCGGAGAAACCCATTTTGTAAAAAAAAAA--- 553 **************************** ******** ****** *** * consensus_12206#0 TTAGAGCTTAGAAGGATGGTCTTTCCACCTCTGACAAAACACCTTTTACTTTAGTGTAGC 1044 consensus_12206#1 ------------------------------------------------------------ consensus_12206#0 TGCATAACACTTCTAAAGCAACTGTAAATAAAATCTGCAGGTGAAGTTCATTGAAAAAAA 1104 consensus_12206#1 ------------------------------------------------------------ consensus_12206#0 AATAAAAAAAAA 1116 consensus_12206#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||