Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12208 cluster # 12208       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12208#0 length = 1911 sequences # 6  
consensus_12208#1 length = 711 sequences # 4  

consensusID : consensus_12208#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1911
fasta sequence
                              [AAGACCTAACTAGGCGGTGGACTTGGGGATTCTAAGTTCCAACAATCCAATCTCCTCCTCTTCCTCCTCTCCTTGAGATCCGATCCAATCCAACCCTGCGGCAGCCGCCTCGCCGGAGGAGGAGGATGCACGGCCGGCCTCGCCGCCCGGACAAGCCGGAGGACGCGGCGGCGGCGGAGGCCAAGGCCGCCAAGCTCCGCGTCCTCCAGGCACAGGTCCTGCACAACCACCACTCCCGCACCTACACCAAGGAGGCACTCGGGCTGAGCTTCAAGCTGCTAGAGATTAATCCTGAGGCGTACACAGCATGGAACTACCGGAAGCTCGCGTTTCAGCACAACATTGGGGAGCTTTCCGAGCCGGAGGCCATCAAATCTGCCATTGATGATGAGCTCAGAGTGGT-AGAGGTTGCATTGA-GGCAGAACCCAAAATCCTACGGGGCTTGGTATCACCGGAAGTGGTTGCTAAATCAAAAGCTCGCCCCAGTGGATTTCAAGTGTGAATTTGGCCTCTTGGATAAACTACTGAAGGTGGACGCAAGGAATTTCCATGGATGGAATTACCGCAGGTTCCTTGCCAGATTCATGGGGGTTCCAGAAGAGGAAGAGCTTAAGTACACTATGGATAAGATAAGTGACAACTTCAGTAATTACTCAGCATGGCATAATCGCAGTATACTTCTGTCCAATCTGCTAATCAAACAGAGCAAGGGTTTCGAGTCAAAGCAGAAGATCTTTTCAG-AGGAGTTTGAACTTGTAACTCAGGCCCTTTTTACAGACCCAAGTGATCAAAGT-GGATGGTTCTATCACCTTTGGCTTTTAGCTCAGACATCTAGTCCAGAGAATCCACAGCTGATTGCTTCGTGGCCTTCTAATGGTTCAAACCTCAGTTTATCTTCCTTGAGCTCCATTTGTTGTTACTCACTGAAGGAAGGGATTCTACCAATTGTTCTTTATTTTAATGAGCCTGTGAAAGGGTTAAGTTCATCGAGTGTGAGCTTGAATTCTGATTTGGTGGTTAGTAAGAACATTCAGTGGAGGCCCCTTTCAGTAACAGATTCTGGACATTCTAACTGTTGGGTCACTTATCTTGAAGTATCAAACTTGGAATGTAACAGTTTGCAGCAATTTTCGGTTGAAGTAAGCATAACCAATTCAGATGAAATTGTGTCCAGAAGCGGCTCTAATTATAACTGTCCCGTGCATTTCTCATTTACCTTTGAACTCAGCAACAATGATAGTACAGCCAAGGATATTGATCCAATTCATGAACTAATCTCCTGGGATTTCTCAGAGCCACTCCTGTCTCATGTAAACCCCAGTTGTATCTGTTTTGAGCAGTTAAAGATCACTAATTCATTGGTTCACAAGGAGTCAAATTGGCATTTGGAGAGACTATCTGATGAAATAGACCTATTTAGAGAATTGCACGATGACAATAGCAAGTTTGCAAAGTTGACATTAGCACGCTTATTGCTTGCCTGTGCTGCAATAAAGTCCCGTGGAAGTTCTCTTGTTGAAAGGAAGGGATACTGTGAAGAGTCGCTCGGGCTCTTTAATGACTTGATCGACCTGGATCCATCTCATAAAAGGTACTACGAGGATGAGCGGAGCCTAGTCTTAATGGATCAGTTAACATGTGACATGGAGGCTTTCAAGAAATACTGTTCAGTCAAAGCTCTACCAAAGTTAGCTCCATTAAACCATGTTCAGCTTTGCAGATTATCTTTAACGCGTATTGGATTTGCTGAACGCTTGTTGTGGGTCCAAATGCTGGACCTAAGCCACAACAACCTCAGATCGATTGAAGGTTTGGAGGCTTTGCAGCAGCTTGTATGCTTGAACCTCGGCAACAACCAGATCAGTAGTTTCACAGCACTTGAACCACTCACGAAGATAATTTCTTTGAAAG]

[+] EMBL CB632269             [AAGACCTAACTAGGCGGTGGACTTGGGGATTCTAAGTTCCAACAATCCAATCTCCTCCTCTTCCTCCTCTCCTTGAGATCCGATCCAATCCAACCCCGCGGCAGCCGCCTCGCCGGAGGAGGAGGATGCACGGCCGGCCTCGCCGCCCGGACAAGCCGGAGGACGCGGCGGCGGCGGAGGCCAAGGCCGCCAAGCTCCGCGACCTCCAGGCACAGGTCCTGCACAACCACCACTCCCGCACCTACACCAAGGAGGCACTCGGGCTGAGCTTCAAGCTGCTCGAGATTAATCCTGAGGCGTACACAGCATGGAACTACCGGAAGCTCGCGTTTCAGCACAACATTGGGGAGCTTTCCGAGCCGGAGGCCATCAAATCTGCCATTGATGATGAGCTTAGAGTGGT AGAGGTTGCATTGA GGCAGAACCCAAAATCCTACGGGGCTTGGTATCACCGGAAGTGGTTGCTAAATCAAAAGCTCGCCCCAGTGGATTTCAAGCGTGAATTTGGCCTCTTGGATAAACTACTGAAGGTGGACGCAAGGAATTTCCATGGATGGAATTACCGCAGGTTCCTTGCCAGATTCATGGGGGTTCCAGAAGAGGAAGAGCTTAAGTACACTATAGATAAGATAAGTGACAACTTCAGTAATTACTCAGCATGGCATAATCGCAGTATACTTCTGTCCAATCTGCTAATCAAACAGAGCAAGGGTTTCGAGTCAAAGCAGAAGATCTTTTCAG AGGAGTTTGAACTTGTAACTCAGGCCCTTTTTACAGACCCAAGTGATCAAAGT GGATGGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C72214               [                  GGACTTGGGGATTCTAAGTTCCAACAATCCAATCTCCTCCTCTNCCTCCTCTCCTTGAGATCCGATCCAATCCAACCCTGCGGCAGCCGCCTCGCCGGAGGAGGAGGATGCACGGCCGGCCTCGCCGCCCGGACAAGCCGGAGGACGCGGCGGCGGCGGAGGCCAAGGCCGCCAAGCTCCGCGTCCTCCAGGCACAGGTCCTGCACAACCACCACTCCCGCACCTACACCAAGGAGGCACTCGGGCTGAGCTTCAAGCTGCTAGAGATTAATCCTGAGGCGTACACAGCATGGAACTACCGGAAGNTCGCGTTTCAGCACAACATTGGGGAGCTTTCCGAGCCGGAGGCAATCAAATCTGCCATTGATGATGAGCTCAGAGTTGTAAGAGGTTNCATTTAGGGAAGAACCCAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK102430             [                               CTAAGTTCCAACAATCCAATCTCCTCCTCTTCCTCCTCTCCTTGAGATCCGATCCAATCCAACCCTGCGGCAGCCGCCTCGCCGGAGGAGGAGGATGCACGGCCGGCCTCGCCGCCCGGACAAGCCGGAGGACGCGGCGGCGGCGGAGGCCAAGGCCGCCAAGCTCCGCGTCCTCCAGGCACAGGTCCTGCACAACCACCACTCCCGCACCTACACCAAGGAGGCACTCGGGCTGAGCTTCAAGCTGCTAGAGATTAATCCTGAGGCGTACACAGCATGGAACTACAGGAAGCTCGCGTTTCAGCACAACATTGGGGAGCTTTCCGAGCCGGAGGCCATCAAATCTGCCATTGATGATGAGCTCAGAGTGGT AGAGGTTGCATTGA GGCAGAACCCAAAATCCTACGGGGCTTGGTATCAGCGGAAGTGGTTGCTAAATCAAAAGCTCGCCCCAGTGGATTTCAAGTGTGAATTTGGCCTCTTGGATAAACTACTGAAGGTGGACGCAAGGAATTTCCATGGATGGAATTACCGCAGGTTCCTTGCCAGATTCATGGGGGTTCCAGAAGAGGAAGAGCTTAAGTACACTATGGATAAGATAAGTGACAACTTCAGTAATTACTCAGCATGGCATAATCGCAGTATACTTCTGTCCAATCTGCTAATCAAACAGAGCAAGGGTTTCGAGTCAAAGCAGAAGATCTTTTCAG AGGAGTTTGAACTTGTAACTCAGGCCCTTTTTACAGACCCAAGTGATCAAAGT GGATGGTTCTATCACCTTTGGCTTTTAGCTCAGACATCTAGTCCAGAGAATCCACAGCTGATTGCTTCGTGGCCTTCTAATGGTTCAAACCTCAGTTTATCTTCCTTGAGCTCCATTTGTTGTTACTCACTGAAGGAAGGGATTCTACCAATTGTTCTTTATTTTAATGAGCCTGTGAAAGGGTTAAGTTCATCGAGTGTGAGCTTGAATTCTGATTTGGTGGTTAGTAAGAACATTCAGTGGAGGCCCCTTTCAGTAACAGATTCTGGACATTCTAACTGTTGGGTCACTTATCTTGAAGTATCAAACTTGGAATGTAACAGTTTGCAGCAATTTTCGGTTGAAGTAAGCATAACCAATTCAGATGAAATTGTGTCCAGAAGCGGCTCTAATTATAACTGTCCCGTGCATTTCTCATTTACCTTTGAACTCAGCAACAATGATAGTACAGCCAAGGATATTGATCCAATTCATGAACTAATCTCCTGGGATTTCTCAGAGCCACTCCTGTCTCATGTAAACCCCAGTTGTATCTGTTTTGAGCAGTTAAAGATCACTAATTCATTGGTTCACAAGGAGTCAAATTGGCATTTGGAGAGACTATCTGATGAAATAGACCTATTTAGAGAATTGCACGATGACAATAGCAAGTTTGCAAAGTTGACATTAGCACGCTTATTGCTTGCCTGTGCTGCAATAAAGTCCCGTGGAAGTTCTCTTGTTGAAAGGAAGGGATACTGTGAAGAGTCGCTCGGGCTCTTTAATGACTTGATCGACCTGGATCCATCTCATAAAAGGTACTACGAGGATGAGCGGAGCCTAGTCTTAATGGATCAGTTAACATGTGACATGGAGGCTTTCAAGAAATACTGTTCAGTCAAAGCTCTACCAAAGTTAGCTCCATTAAACCATGTTCAGCTTTGCAGATTATCTTTAACGCGTATTGGATTTGCTGAACGCTTGTTGTGGGTCCAAATGCTGGACCTAAGCCACAACAACCTCAGATCGATTGAAGGTTTGGAGGCTTTGCAGCAGCTTGTATGCTTGAACCTCGGCAACAACCAGATCAGTAGTTTCACAGCACTTGAACCACTCACGAAGATAATTTCTTTGAAAG]
[+] EMBL CF304056             [                                                                                                                                                                                                               AGGCACAGGTCCTGCACAACCACCACTCCCGCACCTACACCAAGGAGGCACTCGGGCTGAGCTTCAAGCTGCTAGAGATTAATCCTGAGGCGTACACAGCATGGAACTACCGGAAGCTCGCGTTTCAGCACAACATTGGGGAGCTTTCCGAGCCGGAGGCCATCAAATCTGCCATTGATGATGAGCTCAGAGTGGT AGAGGTTGCATTGA GGCAGAACCCAAAATCCTACGGGGCTTGGTATCACCGGAAGTGGTTGCTAAATCAAAAGCTCGCCCCAGTGGATTTCAAGTGTGAATTTGGCCTCTTGGATAAACTACTGAAGGTGGACGCAAGGAATTTCCATGGATGGAATTACCGCAGGTTCCTTGCCAGATTCATGGGGGTTCCAGAAGAGGAAGAGCTTAAGTACACTATGGATAAGATAAGTGACAACTTCAGTAATTACTCAGCATGGCATAATCGCAGTATACTTCTGTCCAATCTGCTAATCAAACAGAGCAAGGGTTTCGAGTCAAAGCAGAAGATCTTTTCAGAAGGAGTTTGAACTTGTAACTCAGGCCCTTTTTACAGACCCAAGTGATCAAAGTGGGATGGTTCTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF305101             [                                                                                                                                                                                                               AGGCACAGGTCCTGCACAACCACCACTCCCGCACCTACACCAAGGAGGCACTCGGGCTGAGCTTCAAGCTGCTAGAGATTAATCCTGAGGCGTACACAGCATGGAACTACCGGAAGCTCGCGTTTCAGCACAACATTGGGGAGCTTTCCGAGCCGGAGGCCATCAAATCTGCCATTGATGATGAGCTCAGAGTGGT AGAGGTTGCATTGA GGCAGAACCCAAAATCCTACGGGGCTTGGTATCACCGGAAGTGGTTGCTAAATCAAAAGCTCGCCCCAGTGGATTTCAAGTGTGAATTTGGCCTCTTGGATAAACTACTGAAGGTGGACGCAAGGAATTTCCATGGATGGAATTACCGCAGGTTCCTTGCCAGATTCATGGGGGTTCCAGAAGAGGAAGAGCTTAAGTACACTATGGATAAGATAAGTGACAACTTCAGTAATTACTCAGCATGGCATAATCGCAGTATACTTCTGTCCAATCTGCTAATCAAACAGAGCAAGGGTTTCGAGTCAAAGCAGAAGATCTTTTCAG AGGAGTTTGAACTTGTAACTCAGGCCCTTTTTACAGACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB631132             [                                                                                                                                                                                                                                                                                                                                                                                ATCAAATCTGCCATTGATGATGAGCTTAGAGTGGT AGAGGTTGCATTGA GGCAGAACCCAAAATCCTACGGGGCTTGGTATCACCGGAAGTGGTTGCTAAATCAAAAGCTCGCCCCAGTGGATTTCAAGCGTGAATTTGGCCTCTTGGATAAACTACTGAAGGTGGACGCAAGGAATTTCCATGGATGGAATTACCGCAGGTTCCTTGCCAGATTCATGGGGGTTCCAGAAGAGGAAGAGCTTAAGTACACTATAGATAAGATAAGTGACAACTTCAGTAATTACTCAGCATGGCATAATCGCAGTATACTTCTGTCCAATCTGCTAATCAAACAGAGCAAGGGTTTCGAGTCAAAGCAGAAGATCTTTTCAG AGGAGTTTGAACTTGTAACTCAGGCCCTTTTTACAGACCCAAGTGATCAAAGT GGATGGTTCTATCACCTTTGGCTTTTAGCTCAGACATCTAGTCCAGAGAATCCACAGCTGATTGCTTCGTGGCCTTCTAATGGTTCAAACCTCAGTTTATCTTCCTTGAGCTCCATTTGTTGTTACTCACTGAAGGAAGGGATTCTACCAATTGTTCTTTATTTTAATGAGCCTGTGAAAGGGTTAAGTTCATCGAGTGTGAGCTTGAATTCTGATTTGGTGGTTAGTAAGAACATTCAGTGGAGGCCCCTTTCAGTAACAGATTCTGGACATTCTAACTGTTGGGTCACTTATCTTGAAGTATCAAACTTGGAATGTAACAGTTTGCAGCAATTTTCAGTTGAAGTAAGCATAACCAATTCAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]


>consensus_12208#0 AAGACCTAACTAGGCGGTGGACTTGGGGATTCTAAGTTCCAACAATCCAATCTCCTCCTC TTCCTCCTCTCCTTGAGATCCGATCCAATCCAACCCTGCGGCAGCCGCCTCGCCGGAGGA GGAGGATGCACGGCCGGCCTCGCCGCCCGGACAAGCCGGAGGACGCGGCGGCGGCGGAGG CCAAGGCCGCCAAGCTCCGCGTCCTCCAGGCACAGGTCCTGCACAACCACCACTCCCGCA CCTACACCAAGGAGGCACTCGGGCTGAGCTTCAAGCTGCTAGAGATTAATCCTGAGGCGT ACACAGCATGGAACTACCGGAAGCTCGCGTTTCAGCACAACATTGGGGAGCTTTCCGAGC CGGAGGCCATCAAATCTGCCATTGATGATGAGCTCAGAGTGGTAGAGGTTGCATTGAGGC AGAACCCAAAATCCTACGGGGCTTGGTATCACCGGAAGTGGTTGCTAAATCAAAAGCTCG CCCCAGTGGATTTCAAGTGTGAATTTGGCCTCTTGGATAAACTACTGAAGGTGGACGCAA GGAATTTCCATGGATGGAATTACCGCAGGTTCCTTGCCAGATTCATGGGGGTTCCAGAAG AGGAAGAGCTTAAGTACACTATGGATAAGATAAGTGACAACTTCAGTAATTACTCAGCAT GGCATAATCGCAGTATACTTCTGTCCAATCTGCTAATCAAACAGAGCAAGGGTTTCGAGT CAAAGCAGAAGATCTTTTCAGAGGAGTTTGAACTTGTAACTCAGGCCCTTTTTACAGACC CAAGTGATCAAAGTGGATGGTTCTATCACCTTTGGCTTTTAGCTCAGACATCTAGTCCAG AGAATCCACAGCTGATTGCTTCGTGGCCTTCTAATGGTTCAAACCTCAGTTTATCTTCCT TGAGCTCCATTTGTTGTTACTCACTGAAGGAAGGGATTCTACCAATTGTTCTTTATTTTA ATGAGCCTGTGAAAGGGTTAAGTTCATCGAGTGTGAGCTTGAATTCTGATTTGGTGGTTA GTAAGAACATTCAGTGGAGGCCCCTTTCAGTAACAGATTCTGGACATTCTAACTGTTGGG TCACTTATCTTGAAGTATCAAACTTGGAATGTAACAGTTTGCAGCAATTTTCGGTTGAAG TAAGCATAACCAATTCAGATGAAATTGTGTCCAGAAGCGGCTCTAATTATAACTGTCCCG TGCATTTCTCATTTACCTTTGAACTCAGCAACAATGATAGTACAGCCAAGGATATTGATC CAATTCATGAACTAATCTCCTGGGATTTCTCAGAGCCACTCCTGTCTCATGTAAACCCCA GTTGTATCTGTTTTGAGCAGTTAAAGATCACTAATTCATTGGTTCACAAGGAGTCAAATT GGCATTTGGAGAGACTATCTGATGAAATAGACCTATTTAGAGAATTGCACGATGACAATA GCAAGTTTGCAAAGTTGACATTAGCACGCTTATTGCTTGCCTGTGCTGCAATAAAGTCCC GTGGAAGTTCTCTTGTTGAAAGGAAGGGATACTGTGAAGAGTCGCTCGGGCTCTTTAATG ACTTGATCGACCTGGATCCATCTCATAAAAGGTACTACGAGGATGAGCGGAGCCTAGTCT TAATGGATCAGTTAACATGTGACATGGAGGCTTTCAAGAAATACTGTTCAGTCAAAGCTC TACCAAAGTTAGCTCCATTAAACCATGTTCAGCTTTGCAGATTATCTTTAACGCGTATTG GATTTGCTGAACGCTTGTTGTGGGTCCAAATGCTGGACCTAAGCCACAACAACCTCAGAT CGATTGAAGGTTTGGAGGCTTTGCAGCAGCTTGTATGCTTGAACCTCGGCAACAACCAGA TCAGTAGTTTCACAGCACTTGAACCACTCACGAAGATAATTTCTTTGAAAG



consensusID : consensus_12208#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 711
fasta sequence
                              [TCAAAGGCTTTCCCAAGTTAGCCCCATTAACCNATTGTTCCAGCTTNGCAATTATCTTTACCCCGTATTGNATTTGCTGACCGCTTGTTGTGGGCCCAAATGCTGGCCCTAGCNACAACAACCTCAGATCGATTGAAGGTTTGGAGGCTTTGCAGCAGCTTGTATGCTTGACCCTCGNCAACAACCAGATCAGTAGTTTCACAGCACTTGAACCACTCACGAAGATAATTTCTTTGAAAGTACTGGATTTATCTTGCANCGAGATTGGAACTCACCCAATCGACACAACCCGGTACATCTGCCCATCTCCATTCTCACATAGAGTTGAAGCATGTGAAGCTTTTGAAGAATGCCGGAAGAAAAATATTAACGTGGAGGAATTCTGGGATGCCATACTGTTCTTCAAACATGTGAATTTGGTACAGCTTTGCCTTGAAGGAAATGCAGTTACCAACA-AGGAGAACTTAAGAACTCTTGTGGTGACACTCAATCCATCTCTAAAATGGTTTGATGGCAAATTTGTTCATTAGCTGTCTGTCTTCTTATA-CAAACTTTGGATAGGATGGTCATGTTGTATACTGTTTCATTATCGGTTTTTAGGAACATTAGGTGGCAATTTTTGTATGGCCCATTTCACCATTTGTACTGGAATACTGGGTTTCAAAGCAAATTTGAGA-CACGATCATGGTAAAAACAGAGTTCTTTCTGCTT]

[+] EMBL AU101129             [TCAAAGGCTTTCCCAAGTTAGCCCCATTAACCNATTGTTCCAGCTTNGCAATTATCTTTACCCCGTATTGNATTTGCTGACCGCTTGTTGTGGGCCCAAATGCTGGCCCTAGCNACAACAACCTCAGATCGATTGAAGGTTTGGAGGCTTTGCAGCAGCTTGTATGCTTGACCCTCGNCAACAACCAGATCAGTAGTTTCACAGCACTTGAACCACTCACGAAGATAATTTCTTTGAAAGTACTGGATTTATCTTGCANCGAGATTGGAACTCACCCAATCGACACAACCCGGTACATCTGCCCATCTCCATTCTCACATAGAGTTGAAGCATGTGAAGCTTTTGAAGAATGCCGGAAGAAAAATATTAACGTGGAGGAATTCTGGGATNCCATACTGTTCTTNAAACATGTGAATTTGGTACAGCTTTGCCTTGAAGGAAATGCAGTTACCAACA AGGAGAACTTAAGAACTCTTGTGGTGACACTCAATCCATCTCTAAAATGGCTTGATGGCAAATTTGTTCATTAGCTGTCTG   TCTTATA CAAACTTTGGATAGGATGGTCATGTTGTATACTGTTTCATTATCGGTTTTTAGGAACATTAGGTGGCAATTTTTGTATGGCCCATTTCACCATTTGTACTGGAATACTGGGTTTCAAAGCAAATTTGAGA CACGATCATGGTAAAAA                 ]
[-] EMBL CB631133             [                                                                                                                                                                                                                                                                                       TCGACACAACCCGGTACATCTGCCCATCTCCATTCTCACATAGAGTTGAAGCATGTGAAGCTTTTGAAGAATGCCGGAAGAAAAATATTAACGTGGAGGAATTCTGGGATGCCATACTGTTCTTCAAACATGTGAATTTGGTACAGCTTTGCCTTGAAGGAAATGCAGTTACCAACA AGGAGAACTTAAGAACTCTTGTGGTGACACTCAATCCATCTTTAAAATGGTTTGATGGCAAATTTGTTCATTAGCTGTCTGTCTTCTTATA CAAACTTTGGATAGGATGGTCATGTTGTATACTGTTTCATTATCGGTTTTTAGGAACATTAGGTGGCAATTTTTGTATGGCCCATTTCACCATTTGTACTGGAATACTGGGTTTCAAAGCAAATTTGAGAGGACGATCATGGTAATTGCAGAGTTCTTTCTGCTT]
[-] EMBL CB632270             [                                                                                                                                                                                                                                                                                       TCGACACAACCCGGTACATCTGCCCATCTCCATTCTCACATAGAGTTGAAGCATGTGAAGCTTTTGAAGAATGCCGGAAGAAAAATATTAACGTGGAGGAATTCTGGGATGCCATACTGTTCTTCAAACATGTGAATTTGGTACAGCTTTGCCTTGAAGGAAATGCAGTTACCAACA AGGAGAACTTAAGAACTCTTGTGGTGACACTCAATCCATCTCTAAAATGGTTTGATGGCAAATTTGTTCATTAGCTGTCTGTCTTCTTATA CAAACTTTGGATAGGATGGTCATGTTGTATACTGTTTCATTATCGGTTTTTAGGAACATTAGGTGGCAATTTTTGTATGGCCCATTTCACCATTTGTACTGGAATACTGGGTTTCAAAGCAAATTTGAGA CACGATCATGGTAAt                   ]
[+] EMBL BI810738             [                                                                                                                                                                                                                                                                                                                                                                                                                        ATGTGAATTTGGTACAGCTTT CCTTGAAGGAAAT CAGTTACCCACACAGGAGAACTTAAGAACTCTTGTGGTGACACTC ATCCATCTCTAAAATGGTTTGATGCCAAATTTGTTCATTAGCTGTCTGTCTTCTTATACCAAACTTTGGATAGGATGGTCATGTTGTATACTGTTTCATTATCGGTTTTTAGGAACCTTAGGT GCCATTTTTGTATGGCCCCTTTCACCATTTGTACTGGAATACTGGGTTTCAAAGCCAATTTGAGA CCCGATCCTGGTAAAAAaaaaa            ]


>consensus_12208#1 TCAAAGGCTTTCCCAAGTTAGCCCCATTAACCNATTGTTCCAGCTTNGCAATTATCTTTA CCCCGTATTGNATTTGCTGACCGCTTGTTGTGGGCCCAAATGCTGGCCCTAGCNACAACA ACCTCAGATCGATTGAAGGTTTGGAGGCTTTGCAGCAGCTTGTATGCTTGACCCTCGNCA ACAACCAGATCAGTAGTTTCACAGCACTTGAACCACTCACGAAGATAATTTCTTTGAAAG TACTGGATTTATCTTGCANCGAGATTGGAACTCACCCAATCGACACAACCCGGTACATCT GCCCATCTCCATTCTCACATAGAGTTGAAGCATGTGAAGCTTTTGAAGAATGCCGGAAGA AAAATATTAACGTGGAGGAATTCTGGGATGCCATACTGTTCTTCAAACATGTGAATTTGG TACAGCTTTGCCTTGAAGGAAATGCAGTTACCAACAAGGAGAACTTAAGAACTCTTGTGG TGACACTCAATCCATCTCTAAAATGGTTTGATGGCAAATTTGTTCATTAGCTGTCTGTCT TCTTATACAAACTTTGGATAGGATGGTCATGTTGTATACTGTTTCATTATCGGTTTTTAG GAACATTAGGTGGCAATTTTTGTATGGCCCATTTCACCATTTGTACTGGAATACTGGGTT TCAAAGCAAATTTGAGACACGATCATGGTAAAAACAGAGTTCTTTCTGCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12208#0      AAGACCTAACTAGGCGGTGGACTTGGGGATTCTAAGTTCCAACAATCCAATCTCCTCCTC 60
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      TTCCTCCTCTCCTTGAGATCCGATCCAATCCAACCCTGCGGCAGCCGCCTCGCCGGAGGA 120
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      GGAGGATGCACGGCCGGCCTCGCCGCCCGGACAAGCCGGAGGACGCGGCGGCGGCGGAGG 180
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      CCAAGGCCGCCAAGCTCCGCGTCCTCCAGGCACAGGTCCTGCACAACCACCACTCCCGCA 240
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      CCTACACCAAGGAGGCACTCGGGCTGAGCTTCAAGCTGCTAGAGATTAATCCTGAGGCGT 300
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      ACACAGCATGGAACTACCGGAAGCTCGCGTTTCAGCACAACATTGGGGAGCTTTCCGAGC 360
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      CGGAGGCCATCAAATCTGCCATTGATGATGAGCTCAGAGTGGTAGAGGTTGCATTGAGGC 420
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      AGAACCCAAAATCCTACGGGGCTTGGTATCACCGGAAGTGGTTGCTAAATCAAAAGCTCG 480
consensus_12208#1      -----TCAAAGGCTTTCCCAAGTTAGCCCCATT--AACCNATTGTTCCA------GCTTN 47
                             ****  * * *     ** *   **    **    *** *  *      ***  

consensus_12208#0      CCCCAGTGGATTTCAAGTGTGAATTTGGCCTCTTGGATAAACTACTGAAGGTGGACGCAA 540
consensus_12208#1      GC--AATT-ATCTTTACCCCGTATTGNATTTGCTG-----ACCGCTTGTTGTGGGCCCAA 99
                        *  * *  ** *  *    * ***     *  **     **  **    **** * ***

consensus_12208#0      GGAATTTCCATGGATGGAATTACCGCAGGTTCCTTGCCAGATTCATGGGGGTTCCAGAAG 600
consensus_12208#1      ATGCTGGCCCTAGCNACAACAACCTCAGATCGATTGA-AGGTT--TGGAGGCTTT----- 151
                           *  ** * *    **  *** *** *   ***  ** **  *** ** *       

consensus_12208#0      AGGAAGAGCTTAAGTACACTATGGATAAGATAAGTGACAACTTCAGTAATTACTCAGCAT 660
consensus_12208#1      -GCAGCAGCTT--GTATGCT-TGACCCTCGNCAACAACCAGATCAGTAGTTTCACAGCAC 207
                        * *  *****  ***  ** **         *   ** *  ****** ** * ***** 

consensus_12208#0      GGCATAATCGCAGTATACTTCTGTCCAATCTGCTAATCAAACAGAGCAAGGGTTTCGAGT 720
consensus_12208#1      -------TTGAACCACTCACGAAGATAATTT-CTTTGAAAGTACTGGATTTATCTTGCAN 259
                              * * *  *  *        *** * **    **  *  * *    * * *   

consensus_12208#0      CAAAGCAGAAGATCTTTTCAGAGGAGTTTGAACTTGTAACTCAGGCCCTTTTTACAGACC 780
consensus_12208#1      CGAGATTG--GAACTCACCCAATCGACACAACCCGGTACATCTGCCCATCTCCATTCTCA 317
                       * *    *  ** **   *  *        * *  ***  ** * ** * *  *    * 

consensus_12208#0      CAAGTGATCAAAGTGGATGGTTCTATCACCTTTGGCTTTTAGCTCAGACATCTAGTCCAG 840
consensus_12208#1      CATAGAGTTGAAGCATGTGAAGCTTTTGAAGAATGCCGGAAGAA-AAATAT-TAACGTGG 375
                       **     *  ***    **   ** *        **    **   * * ** **     *

consensus_12208#0      AGAATCCACAGCTGATTGCTTCGTGGCCTTCTAATGGTTCAAACCTCAGTTTATCTTCCT 900
consensus_12208#1      AGGAATTCTGG--GATGCCATACTGTTCTTCAAACATGTGAA--TTTGGTACAGCTTTGC 431
                       ** *      *  ***  * *  **  **** **    * **   *  **  * ***   

consensus_12208#0      TGAGCTCCATTTGTTGTTACTCACTGAAGGAAGGGATTCTACCAATTGTTCTTTATTTTA 960
consensus_12208#1      CTTGAAGGAAATGCAGTTACCAAC--AAGGAGAACTTAAGAACTCTTGTGGTGACACTCA 489
                          *    *  **  *****  **  *****     *   * *  ****  *     * *

consensus_12208#0      ATGAGCCTGTGAAAGGGTT-------AAGTTCATCGAGTGTGAGCTTGAATTCTGATTTG 1013
consensus_12208#1      ATCCATCTCTAAAATGGTTTGATGGCAAATTTGTTCATTAGCTGTCTGTCTTCTTATACA 549
                       **    ** * *** ****       ** **  *  * *    *  **  **** **   

consensus_12208#0      GTGGTTAGTAAGAACATTCA-GTGGAGGCCCCTTTCAGTAACAGATTCTGGACATTCTAA 1072
consensus_12208#1      AACTTTGGATAGGATGGTCATGTTGTATACTGTTTCATTATCGGTTTTTAGGAACATTAG 609
                           ** *  ** *   *** ** *    *  ***** ** * * ** * *  *   ** 

consensus_12208#0      CTGTTGGGTCACTTATCTTGAAGTATCAAACTTGGAATGTAACAGTTTGCAGCAATTTTC 1132
consensus_12208#1      GTGGCAATTTTTGTATGGCCCATTTCACCATTTGTACTGGAATACTGGGTTTCAAAGCAA 669
                        **     *    ***     * *     * *** * ** ** * *  *   ***     

consensus_12208#0      GGTTGAAGTAAG--CATAACCAATTCAGATGAAATTGTGTCCAGAAGCGGCTCTAATTAT 1190
consensus_12208#1      ATTTGAGACACGATCATGGTAAAAACAGAGTTCTTTCTGCTT------------------ 711
                         ****   * *  ***    **  ****     ** **                     

consensus_12208#0      AACTGTCCCGTGCATTTCTCATTTACCTTTGAACTCAGCAACAATGATAGTACAGCCAAG 1250
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      GATATTGATCCAATTCATGAACTAATCTCCTGGGATTTCTCAGAGCCACTCCTGTCTCAT 1310
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      GTAAACCCCAGTTGTATCTGTTTTGAGCAGTTAAAGATCACTAATTCATTGGTTCACAAG 1370
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      GAGTCAAATTGGCATTTGGAGAGACTATCTGATGAAATAGACCTATTTAGAGAATTGCAC 1430
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      GATGACAATAGCAAGTTTGCAAAGTTGACATTAGCACGCTTATTGCTTGCCTGTGCTGCA 1490
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      ATAAAGTCCCGTGGAAGTTCTCTTGTTGAAAGGAAGGGATACTGTGAAGAGTCGCTCGGG 1550
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      CTCTTTAATGACTTGATCGACCTGGATCCATCTCATAAAAGGTACTACGAGGATGAGCGG 1610
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      AGCCTAGTCTTAATGGATCAGTTAACATGTGACATGGAGGCTTTCAAGAAATACTGTTCA 1670
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      GTCAAAGCTCTACCAAAGTTAGCTCCATTAAACCATGTTCAGCTTTGCAGATTATCTTTA 1730
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      ACGCGTATTGGATTTGCTGAACGCTTGTTGTGGGTCCAAATGCTGGACCTAAGCCACAAC 1790
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      AACCTCAGATCGATTGAAGGTTTGGAGGCTTTGCAGCAGCTTGTATGCTTGAACCTCGGC 1850
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      AACAACCAGATCAGTAGTTTCACAGCACTTGAACCACTCACGAAGATAATTTCTTTGAAA 1910
consensus_12208#1      ------------------------------------------------------------
                                                                                   

consensus_12208#0      G 1911
consensus_12208#1      -
                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)