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Oryza sativa
cluster # 12210 cluster # 12210       Sequences # 10       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12210#0 length = 1348 sequences # 6  
consensus_12210#1 length = 559 sequences # 1  
consensus_12210#2 length = 548 sequences # 1  
consensus_12210#3 length = 460 sequences # 1  
consensus_12210#4 length = 342 sequences # 1  

consensusID : consensus_12210#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1348
fasta sequence
                              [TTTTTTAACTTTACAAGTGCTCCCTTTTCTTTTCCCATATATACCAGGACTATACAATTAGAAGGTCCGAAAGGCAAAGTGTACATTGATCGACAGTCTCGTGTACGATACCCTACACCAACTA-TGTCCTCGTTTCACCACCAACCGGTGATGGCAGCACTGAAGATTTACAAATTCTGTATGTACTCTCGTAGTCTCGTCCAACAAATAGCTCCGACGAGGATGAACAACTCGAATCGAGCTCCTTTTCAGCCAAAAATATACAAGGAACCGTAAATATGTACCAGCTGCTTCACCCTCCCAGTCAGAGTCTTCTAGCGTCTCCTTCACCAGAGCCCTCAAAAGCATTTGAAGCTCCAGCTTCACATGAGCATAAGTAACTTCAGAGCCAGATAGGCTCACAG-ATGTGCATCATCCATAGTTTGAACTTGCGCACGTATAGATATATGACGCACGGTCCAATCAGATCAGTTTCGGAGAGTCGCTTGCAGAGTTTCATGTAGGACTCCAGGCTGCCAGATTCCTGTATGTTTCTCCGCAGGGCGGTCAGCACAGCTGCTCTGTCTAGGTACTCTGGATACAAGCCCATGTCAAGCATCTTCATGAGTGTTTCCGAGGCCTCCAGATAAAAGCCGCCTTTGACATAGCCTCGTAGAAGCCATGACAGAGACTTCTTCCTTCTTCCAGCACTGGTTGACTCGACTCCAGCGAGCAATCGACGGACGGCAGCAACTTCTCCCTGAGAAGCGCAGATGGCCAAAACAACATCATAGAGCTGTGTGTCAGGTTCCCTACCAAGAAGCTTCATTTCCCAAAGTTGGTGCTCAGCTTCTAAGCCACAACCAGCGCAAGTGTACAATGAAAGGAGCCTCTCGTGCACAAGTCCTAGGACATCACTGCTGCCTTACTCAATTGCCCATTTTGATAAAAGAACACCATCACTTAATAATTCACATTGGTAATTTTCAATACTATGCATAGTCTCAGAGTCAAGTTTGGAAATCGAGCCCACCTTCACCGATGAATTCAATGTCCGCAATGCCTCTGAGAATCCTTTTGTCTTTAACCATGCAGTCAACCAATAAGATACTATACACTCANGGTGAAGCCACTCTCTAGATCATGATCATTACAGCTGCCGTATCCATCATATATCTCACCAAGATCGACGCCTCGGCTGCGTGTAGACGCATATCCTCGTGCACGCAGCAAGCCTTTCCAGACTCTGACATAGGCTTCCGTTGCGGCATAAACACGCTTTAAGTGACCGGCGGCGAGATATCTTCTACTGAAGGGGAATGCCCCCCGCTCCAAAAAGGTTGCTCCATAGAGAATTACAATCTCATCC]

[-] EMBL BI805530             [TTTTTTAACTTTACAAGTGCTCCCTTTTCTTTTCCCATATATACCAGGACTATACAATTAGAAGGTCCGAAAGGCAAAGTGTACATTGATCGACAGTCTCGTGTACGATACCCTACACCAACTA TGTCCTCGTTTCACCACCAACCGGTGATGGCAGCACTGAAGATTTACAAATTCTGTATGTACTCTCGTAGTCTCGTCCAACAAATAGCTCCGACGAGGATGAACAACTCGAATCGAGCTCCTTTTCAGCCAAAAATATACAAGGAACCGTAAATATGTACCAGCTGCTTCACCCTCCCAGTCAGAGTCTTCTAGCGTCTCCTTCACCAGAGCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL BM038110             [ TTTTTAACTTTACAAGTG TCCCTTTTCTTTTCCCATATATACCAGGACTATACAATTAGAAGGTCCGAAAGG AAAGGGTACA TGATCGACAGTCTCGTGTACGATACCCTACACCAACTA TGTCCTCGTTTCACCACCAACCGGTGATGGCAGCACTGAAGATTTACAAATTCTGTATGTACTCTCGTAGTCTCGTCCAACAAATAGCTCCGACGAGGATGAACAACTCGAATCGAGCTCCTTTTCAGCCAAAAATATACAAGGAACCGTAAATATGTACCAGCTGCTTCACCCTCCCAGTCAGAGTCTTCTAGCGTCTCCTTCACCAGAGCCCTCAAAAGCA TTGAAGCTCCAGCTTCACATGAGCATAAGTAACTTCAGAGCCAGATAGGCTCACAG ATGTGCATCATCCATAG TTGAACTTGCGCACGTATAGATATATGACGCACGGTCCAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL BI813254             [      tttTTTACAAGTGCTCCCTTTTCTTTTCCCATATATACCAGGACTATACAATTAGAAGGTCCGAAAGGCAAAGTGTACA TGATCGACAGTCTCGTGTACGATACCCTACACCAACTA TGTCCTCGTTTCACCACCAACCGGTGATGGCAGCACTGAAGATTTACAAATTCTGTATGTACTCTCGTAGTCTCGTCCAACAAATAGCTCCGACGAGGATGAACAACTCGAATCGAGCTCCTTTTCAGCCAAAAATATACAAGGAACCGTAAATATGTACCAGCTG TTCACCCTCCCAGTCAGAGTCTTCTAGCGTCTCCTTCACCAGAGCCCTCAAAAGCATTTGAAGCTCCAGCTTCACATGAGCATAAGTAACTTCAGAGCCAGATAGGGTCACAG ATGTGCggacgc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB673563             [                   CTCCCTTTTCTTCTCTCAAGTATACCAGGACTATACAATTAGAAGGTCCGAAAGGCAAAGTGTACATTGATCGACAGTCTCGTGTACGATACCCTACACCAACTATTGTCCTCGTTTCACCACCAACCGGTGATGGCAGCACTGAAGATTTACAAATTCTGTATGTACTCTCGTAGTCTCGTCCAACAAATAGCTCCGACGAGGATGAACAACTCGAATCGAGCTCCTTTTCAGCCAAAAATATACAAGGAACCGTAAATATGTACCAGCTGCTTCACCCTCCCAGTCAGAGTCTTCTAGCGTCTCCTTCACCAGAGCCCTCAAAAGCATTTGAAGCTCCAGCTTCACATGAGCATAAGTAACTTCAGAGCCAGATAGGCTCACAGCATGTGCATCATCCATAGTTTGAACTTGCGCACGTATAGATATATGACGCACGGTCCAATCAGATCAGTTTCGGAGAGTCGCTTGCAGAGTTTCATGTAGGACTCCAGGCTGCCAGATTCCTGTATGTTTCTCCGCAGGGCGGTCAGCACAGCTGCTCTGTCTAGGTACTCTGGATACAAGCCCATGTCAAGCATCTTCATGAGTGTTTCCGAGGCCTCCAGATAAAAGCCGCCTTTGACATAGCCTCGTAGAAGCCATGACAGAGACTTCTTCCTTCTTCCAGCACTGGTTGACTCGACTCCAGCGAGCAATCGACGGACGGCAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB673562             [                                                                                                                                                                                                                                                   ctactgtgAGCCGAAAATATACGAGGAACGGGAAGAATGTACCAGCTGCTTCACCCTCCCAGTCAAAGTCTTCTAGCGTCTCCTTCACCAGAGCCCTCAAAAGCATTTGAAGCTCCAGGTTCACATGAGCATAAGTAACTTCAAAGCCAGATAGGGTCACAGCATGTGCATCATCCATAATTTGAACTTGCGCACGTATATATATATGACGCACGGTCCAATCAAATCAGTTTCGGAGAGTCGCTTGCAGAGTTTCATGTAGGACTCCAGGCTGCCAGATTCCTGTATGTTTCTCCGCAGGGCGGTCAGCACAGCTGCTCTGTCTAGGTACTCTGGATACAAGCCCATGTCAAGCATCTTCATGAGTGTTTCCGAGGCCTCCAGATAAAAGCCGCCTTTGACATAGCCTCGTAGAAGCCATGACAGAGACTTCTTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AW155120             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTGCCAGATTCCTGTATGTTTCTCCGCAGGGCGGTCAGCACAGCTGCTCTGTCTAGGTACTCTGGATACAAGCCCATGTCAAGCATCTTCATGAGTGTTTCCGAGGCCTCCAGATAAAAGCCGCCTTTGACATAGCCTCGTAGAAGCCATGACAGAGACTTCTTCCTTCTTCCAGCACTGGTTGACTCGACTCCAGCGAGCAATCGACGGACGGCAGCAACTTCTCCCTGAGAAGCGCAGATGGCCAAAACAACATCATAGAGCTGTGTGTCAGGTTCCCTACCAAGAAGCTTCATTTCCCAAAGTTGGTGCTCAGCTTCTAAGCCACAACCAGCGCAAGTGTACAATGAAAGGAGCCTCTCGTGCACAAGTCCTAGGACATCACTGCTGCCTTACTCAATTGCCCATTTTGATAAAAGAACACCATCACTTAATAATTCACATTGGTAATTTTCAATACTATGCATAGTCTCAGAGTCAAGTTTGGAAATCGAGCCCACCTTCACCGATGAATTCAATGTCCGCAATGCCTCTGAGAATCCTTTTGTCTTTAACCATGCAGTCAACCAATAAGATACTATACACTCANGGTGAAGCCACTCTCTAGATCATGATCATTACAGCTGCCGTATCCATCATATATCTCACCAAGATCGACGCCTCGGCTGCGTGTAGACGCATATCCTCGTGCACGCAGCAAGCCTTTCCAGACTCTGACATAGGCTTCCGTTGCGGCATAAACACGCTTTAAGTGACCGGCGGCGAGATATCTTCTACTGAAGGGGAATGCCCCCCGCTCCAAAAAGGTTGCTCCATAGAGAATTACAATCTCATCC]


>consensus_12210#0 TTTTTTAACTTTACAAGTGCTCCCTTTTCTTTTCCCATATATACCAGGACTATACAATTA GAAGGTCCGAAAGGCAAAGTGTACATTGATCGACAGTCTCGTGTACGATACCCTACACCA ACTATGTCCTCGTTTCACCACCAACCGGTGATGGCAGCACTGAAGATTTACAAATTCTGT ATGTACTCTCGTAGTCTCGTCCAACAAATAGCTCCGACGAGGATGAACAACTCGAATCGA GCTCCTTTTCAGCCAAAAATATACAAGGAACCGTAAATATGTACCAGCTGCTTCACCCTC CCAGTCAGAGTCTTCTAGCGTCTCCTTCACCAGAGCCCTCAAAAGCATTTGAAGCTCCAG CTTCACATGAGCATAAGTAACTTCAGAGCCAGATAGGCTCACAGATGTGCATCATCCATA GTTTGAACTTGCGCACGTATAGATATATGACGCACGGTCCAATCAGATCAGTTTCGGAGA GTCGCTTGCAGAGTTTCATGTAGGACTCCAGGCTGCCAGATTCCTGTATGTTTCTCCGCA GGGCGGTCAGCACAGCTGCTCTGTCTAGGTACTCTGGATACAAGCCCATGTCAAGCATCT TCATGAGTGTTTCCGAGGCCTCCAGATAAAAGCCGCCTTTGACATAGCCTCGTAGAAGCC ATGACAGAGACTTCTTCCTTCTTCCAGCACTGGTTGACTCGACTCCAGCGAGCAATCGAC GGACGGCAGCAACTTCTCCCTGAGAAGCGCAGATGGCCAAAACAACATCATAGAGCTGTG TGTCAGGTTCCCTACCAAGAAGCTTCATTTCCCAAAGTTGGTGCTCAGCTTCTAAGCCAC AACCAGCGCAAGTGTACAATGAAAGGAGCCTCTCGTGCACAAGTCCTAGGACATCACTGC TGCCTTACTCAATTGCCCATTTTGATAAAAGAACACCATCACTTAATAATTCACATTGGT AATTTTCAATACTATGCATAGTCTCAGAGTCAAGTTTGGAAATCGAGCCCACCTTCACCG ATGAATTCAATGTCCGCAATGCCTCTGAGAATCCTTTTGTCTTTAACCATGCAGTCAACC AATAAGATACTATACACTCANGGTGAAGCCACTCTCTAGATCATGATCATTACAGCTGCC GTATCCATCATATATCTCACCAAGATCGACGCCTCGGCTGCGTGTAGACGCATATCCTCG TGCACGCAGCAAGCCTTTCCAGACTCTGACATAGGCTTCCGTTGCGGCATAAACACGCTT TAAGTGACCGGCGGCGAGATATCTTCTACTGAAGGGGAATGCCCCCCGCTCCAAAAAGGT TGCTCCATAGAGAATTACAATCTCATCC



consensusID : consensus_12210#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence
                              [ACCAGTTGCTTCACCCTCCCAGTCAGAGTCTTCTAGCGTCTCCTTCACCAGAGCCCTCAAAAGCATTTGAAGCTCCAGCTTCACATGAGCATAAGTAACTTCAGAGCCAGATAGGCTCACAGCATGTGCATCATCCATAGTTTGAACTTGCGCACGTATAGATATATGACGCACGGTCCAATCAGATCAGTTTCGGAGAGTCGCTTGCAGAGTTTCATGTAGGACTCCAGGCTGCCAGATTCCTGTATGTTTCTCCGCAGGGCGGTCAGCACAGCTGCTCTGTCTAGGTACTCTGGATACAAGCCCATGTCAAGCATCTTCATGAGTGTTTCCGAGGCCTCCAGATAAAAGCCGCCTTTGACATAGCCTCGTAGAAGCCATGACAGAGACTTCTTCCTTCTTCCAGCACTGGTTGACTCGACTCCAGCGAGCAATCGACGGACGGCAGCAACTTCTCCCTGAGAAGCGCAGATGGCCAAAACAACATCATAGAGCTGTGTGTCAGGTTCCCTACCAAGAAGCTTCATTTCCCAAAGTTGCTCGTGCCGAATTCGGCACG]

[-] EMBL BE230541             [ACCAGTTGCTTCACCCTCCCAGTCAGAGTCTTCTAGCGTCTCCTTCACCAGAGCCCTCAAAAGCATTTGAAGCTCCAGCTTCACATGAGCATAAGTAACTTCAGAGCCAGATAGGCTCACAGCATGTGCATCATCCATAGTTTGAACTTGCGCACGTATAGATATATGACGCACGGTCCAATCAGATCAGTTTCGGAGAGTCGCTTGCAGAGTTTCATGTAGGACTCCAGGCTGCCAGATTCCTGTATGTTTCTCCGCAGGGCGGTCAGCACAGCTGCTCTGTCTAGGTACTCTGGATACAAGCCCATGTCAAGCATCTTCATGAGTGTTTCCGAGGCCTCCAGATAAAAGCCGCCTTTGACATAGCCTCGTAGAAGCCATGACAGAGACTTCTTCCTTCTTCCAGCACTGGTTGACTCGACTCCAGCGAGCAATCGACGGACGGCAGCAACTTCTCCCTGAGAAGCGCAGATGGCCAAAACAACATCATAGAGCTGTGTGTCAGGTTCCCTACCAAGAAGCTTCATTTCCCAAAGTTGCTCGTGCCGAATTCGGCACG]


>consensus_12210#1 ACCAGTTGCTTCACCCTCCCAGTCAGAGTCTTCTAGCGTCTCCTTCACCAGAGCCCTCAA AAGCATTTGAAGCTCCAGCTTCACATGAGCATAAGTAACTTCAGAGCCAGATAGGCTCAC AGCATGTGCATCATCCATAGTTTGAACTTGCGCACGTATAGATATATGACGCACGGTCCA ATCAGATCAGTTTCGGAGAGTCGCTTGCAGAGTTTCATGTAGGACTCCAGGCTGCCAGAT TCCTGTATGTTTCTCCGCAGGGCGGTCAGCACAGCTGCTCTGTCTAGGTACTCTGGATAC AAGCCCATGTCAAGCATCTTCATGAGTGTTTCCGAGGCCTCCAGATAAAAGCCGCCTTTG ACATAGCCTCGTAGAAGCCATGACAGAGACTTCTTCCTTCTTCCAGCACTGGTTGACTCG ACTCCAGCGAGCAATCGACGGACGGCAGCAACTTCTCCCTGAGAAGCGCAGATGGCCAAA ACAACATCATAGAGCTGTGTGTCAGGTTCCCTACCAAGAAGCTTCATTTCCCAAAGTTGC TCGTGCCGAATTCGGCACG



consensusID : consensus_12210#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence
                              [TTTTTTTTTTCCCATATATACCAGGACTATACAATTAGAAGTGTCCTGAAAGGAAATGTGTACATTTGATCGACAGTCTCGTGTACGATACCCTAAACAATATTTGTCCTCGTTTCACCACCAACGGGTGATGGGAGCACTGAAGATTTACAAATTCTTGTATGTACTCTCGTAGTCTCGTCCAACAAATAGCTCCGACGAGGATGAACAACTCGAATCGAGCTCCTTTTCAGCCAAAAATATACAAGGAACCGTAAATATGTACCAGCTTGTTCACCCTCCCAGTCAGAGTCTTCTAGGCTGTCTCCTTCACCAGAGCCCTCAAAAGCATTGTGAAGCTCCAGCTTCACATGAGCATAATGTAACTTCAGAGCCAGATAGGGTCACAGCATGTGCATCATCCATAGTTTGTGAACTTGCGCACGTATAGATATATTGACGCACTGGTCCAATCAGATCAGTTTCGGAGAGTCGCTTGCAGAGTTTCACTGTCAGGACTCCAGGCGTGGCAGATTCCCTGNATGTTTCTCCGACAGGGGTGGGTCCAG]

[-] EMBL BM038140             [TTTTTTTTTTCCCATATATACCAGGACTATACAATTAGAAGTGTCCTGAAAGGAAATGTGTACATTTGATCGACAGTCTCGTGTACGATACCCTAAACAATATTTGTCCTCGTTTCACCACCAACGGGTGATGGGAGCACTGAAGATTTACAAATTCTTGTATGTACTCTCGTAGTCTCGTCCAACAAATAGCTCCGACGAGGATGAACAACTCGAATCGAGCTCCTTTTCAGCCAAAAATATACAAGGAACCGTAAATATGTACCAGCTTGTTCACCCTCCCAGTCAGAGTCTTCTAGGCTGTCTCCTTCACCAGAGCCCTCAAAAGCATTGTGAAGCTCCAGCTTCACATGAGCATAATGTAACTTCAGAGCCAGATAGGGTCACAGCATGTGCATCATCCATAGTTTGTGAACTTGCGCACGTATAGATATATTGACGCACTGGTCCAATCAGATCAGTTTCGGAGAGTCGCTTGCAGAGTTTCACTGTCAGGACTCCAGGCGTGGCAGATTCCCTGNATGTTTCTCCGACAGGGGTGGGTCCAG]


>consensus_12210#2 TTTTTTTTTTCCCATATATACCAGGACTATACAATTAGAAGTGTCCTGAAAGGAAATGTG TACATTTGATCGACAGTCTCGTGTACGATACCCTAAACAATATTTGTCCTCGTTTCACCA CCAACGGGTGATGGGAGCACTGAAGATTTACAAATTCTTGTATGTACTCTCGTAGTCTCG TCCAACAAATAGCTCCGACGAGGATGAACAACTCGAATCGAGCTCCTTTTCAGCCAAAAA TATACAAGGAACCGTAAATATGTACCAGCTTGTTCACCCTCCCAGTCAGAGTCTTCTAGG CTGTCTCCTTCACCAGAGCCCTCAAAAGCATTGTGAAGCTCCAGCTTCACATGAGCATAA TGTAACTTCAGAGCCAGATAGGGTCACAGCATGTGCATCATCCATAGTTTGTGAACTTGC GCACGTATAGATATATTGACGCACTGGTCCAATCAGATCAGTTTCGGAGAGTCGCTTGCA GAGTTTCACTGTCAGGACTCCAGGCGTGGCAGATTCCCTGNATGTTTCTCCGACAGGGGT GGGTCCAG



consensusID : consensus_12210#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence
                              [TTCAGTAAGCAGTACGCTTCATTCTTTTTTAAGATGAAAAACCCTACTACCTAATAAACTAAACTAGGAATCGTGAATTCGCGATGCAGATGACCTCTCTTCCCTAATCGGTAACCTCACACGTGCAGGGTGGCAATAATCATCGTGGCATCGGGTCGCCACGTGGCCACGGCCAATGCCACTCAATGGANTGGTACTAGTGGTTACAATTTGTAAACCTTTTACAAAGGTNTGGGTCACCTTAGTATCCTGTATTCCCCAATAATAATACCAGGGACCTAATACAAATTAGAAGGTCCGAAAGGCAAAGGTGTACATTGAATCGAACAGGTCTCGGTGGTACGATACCCTACACCAACTATTGTCCTCGTTTCACCACCAACCGGGTGATGGCAGCACTGAAGATTTACAAATTCTGTATGTACTCTCGGTAGTCTCGTCCAACAAATAGCTCCGACGA]

[-] EMBL BM419837             [TTCAGTAAGCAGTACGCTTCATTCTTTTTTAAGATGAAAAACCCTACTACCTAATAAACTAAACTAGGAATCGTGAATTCGCGATGCAGATGACCTCTCTTCCCTAATCGGTAACCTCACACGTGCAGGGTGGCAATAATCATCGTGGCATCGGGTCGCCACGTGGCCACGGCCAATGCCACTCAATGGANTGGTACTAGTGGTTACAATTTGTAAACCTTTTACAAAGGTNTGGGTCACCTTAGTATCCTGTATTCCCCAATAATAATACCAGGGACCTAATACAAATTAGAAGGTCCGAAAGGCAAAGGTGTACATTGAATCGAACAGGTCTCGGTGGTACGATACCCTACACCAACTATTGTCCTCGTTTCACCACCAACCGGGTGATGGCAGCACTGAAGATTTACAAATTCTGTATGTACTCTCGGTAGTCTCGTCCAACAAATAGCTCCGACGA]


>consensus_12210#3 TTCAGTAAGCAGTACGCTTCATTCTTTTTTAAGATGAAAAACCCTACTACCTAATAAACT AAACTAGGAATCGTGAATTCGCGATGCAGATGACCTCTCTTCCCTAATCGGTAACCTCAC ACGTGCAGGGTGGCAATAATCATCGTGGCATCGGGTCGCCACGTGGCCACGGCCAATGCC ACTCAATGGANTGGTACTAGTGGTTACAATTTGTAAACCTTTTACAAAGGTNTGGGTCAC CTTAGTATCCTGTATTCCCCAATAATAATACCAGGGACCTAATACAAATTAGAAGGTCCG AAAGGCAAAGGTGTACATTGAATCGAACAGGTCTCGGTGGTACGATACCCTACACCAACT ATTGTCCTCGTTTCACCACCAACCGGGTGATGGCAGCACTGAAGATTTACAAATTCTGTA TGTACTCTCGGTAGTCTCGTCCAACAAATAGCTCCGACGA



consensusID : consensus_12210#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence
                              [TTTTTTATGTTACATTTAACTTTACAAGTTGCTCCCTTTNGCTTTTCCCATATATACCAGGACTATACAATTAGAAGGTCCGAAAGGCAAAGTGTACATTGATCGACAGTCTCGGTGTACGATACCCTACACCAACTATTGTCCTCGTTTCACCACCAACCGGTGATGGCAGCACTGAAGATTTACAAATTCTGTATGTACGTCTCGTAGTCTCGGTCCAACAAAATAGCTCCGACGAGGATGAACAACTCGAATCGAGCTCCTTTTCAGCCAAAAAAGTAATAGCAAGGGAACCGGTAAGAGTAGTGTACCAGCAGTGCTTCACGCCGTCCGCGAGAGTCC]

[-] EMBL BQ906564             [TTTTTTATGTTACATTTAACTTTACAAGTTGCTCCCTTTNGCTTTTCCCATATATACCAGGACTATACAATTAGAAGGTCCGAAAGGCAAAGTGTACATTGATCGACAGTCTCGGTGTACGATACCCTACACCAACTATTGTCCTCGTTTCACCACCAACCGGTGATGGCAGCACTGAAGATTTACAAATTCTGTATGTACGTCTCGTAGTCTCGGTCCAACAAAATAGCTCCGACGAGGATGAACAACTCGAATCGAGCTCCTTTTCAGCCAAAAAAGTAATAGCAAGGGAACCGGTAAGAGTAGTGTACCAGCAGTGCTTCACGCCGTCCGCGAGAGTCC]


>consensus_12210#4 TTTTTTATGTTACATTTAACTTTACAAGTTGCTCCCTTTNGCTTTTCCCATATATACCAG GACTATACAATTAGAAGGTCCGAAAGGCAAAGTGTACATTGATCGACAGTCTCGGTGTAC GATACCCTACACCAACTATTGTCCTCGTTTCACCACCAACCGGTGATGGCAGCACTGAAG ATTTACAAATTCTGTATGTACGTCTCGTAGTCTCGGTCCAACAAAATAGCTCCGACGAGG ATGAACAACTCGAATCGAGCTCCTTTTCAGCCAAAAAAGTAATAGCAAGGGAACCGGTAA GAGTAGTGTACCAGCAGTGCTTCACGCCGTCCGCGAGAGTCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12210#3      ------------------------------------------------------------
consensus_12210#4      ------------------------------------------------------------
consensus_12210#0      TTTTTTAACTTTACAAGTGCTCCCTTTTCTTTTCCCATATATACCAGGACTATACAATTA 60
consensus_12210#1      ------------------------------------------------------------
consensus_12210#2      ------------------------------------------------------------
                                                                                   

consensus_12210#3      ------------------------------------------------------------
consensus_12210#4      ------------------------------------------------------------
consensus_12210#0      GAAGGTCCGAAAGGCAAAGTGTACATTGATCGACAGTCTCGTGTACGATACCCTACACCA 120
consensus_12210#1      ------------------------------------------------------------
consensus_12210#2      ------------------------------------------------------------
                                                                                   

consensus_12210#3      ------------------------------------------------------------
consensus_12210#4      ------------------------------------------------------------
consensus_12210#0      ACTATGTCCTCGTTTCACCACCAACCGGTGATGGCAGCACTGAAGATTTACAAATTCTGT 180
consensus_12210#1      ------------------------------------------------------------
consensus_12210#2      ------------------------------------------------------------
                                                                                   

consensus_12210#3      ------------------------------------------------------------
consensus_12210#4      ------------------------------------------------------------
consensus_12210#0      ATGTACTCTCGTAGTCTCGTCCAACAAATAGCTCCGACGAGGATGAACAACTCGAATCGA 240
consensus_12210#1      ------------------------------------------------------------
consensus_12210#2      ------------------------------------------------------------
                                                                                   

consensus_12210#3      ------------------------------------------------------------
consensus_12210#4      ------------------------------------------------------------
consensus_12210#0      GCTCCTTTTCAGCCAAAAATATACAAGGAACCGTAAATATGTACCAGCTGCTTCACCCTC 300
consensus_12210#1      ------------------------------------------ACCAGTTGCTTCACCCTC 18
consensus_12210#2      ---------------------------------------TTTTTTTTTTCCCATATATAC 21
                                                                                   

consensus_12210#3      -------------TTCAGTAAGCAGTACGCTTCATTCTTTTTTAAGATGAAAAACCCTAC 47
consensus_12210#4      ------------------------------------------------------------
consensus_12210#0      CCAGTCAGAGTCTTCTAGCGTCTCCTTCACCAGAGCCCTCAAAAGCATTTGAAGCTCCAG 360
consensus_12210#1      CCAGTCAGAGTCTTCTAGCGTCTCCTTCACCAGAGCCCTCAAAAGCATTTGAAGCTCCAG 78
consensus_12210#2      CAGGACTATACAATTAGAAGTGTCCTGAAAGGAAATGTGTACATTTGATCGACAGTCTCG 81
                                                                                   

consensus_12210#3      TACCTAATAAACTAAACTAGGAATCGTGAATTCGCGATGCAGATGACCTCTCTTCCCTAA 107
consensus_12210#4      ------------------------------------------------------------
consensus_12210#0      CTTCACATGAGCATAAGTAACTTCAGAGCCAGATAGGCTCACAG-ATGTGCATCATCCAT 419
consensus_12210#1      CTTCACATGAGCATAAGTAACTTCAGAGCCAGATAGGCTCACAGCATGTGCATCATCCAT 138
consensus_12210#2      TGT-ACGATACCCTAAACAATATTTGTCCTCGTTTCACCACCA--ACGGGTGATGGGAGC 138
                                                                                   

consensus_12210#3      TCGGTAACCTCACACGTGCAGGGTGGCAATAATCATCGTGGCATCGGGTCGCCACGTGGC 167
consensus_12210#4      ------------------------------------------------------------
consensus_12210#0      AGTTTGAACTTGCGCACGTATAGATATATGACGCACGGTCCAATCAGATCAGTTTCGGAG 479
consensus_12210#1      AGTTTGAACTTGCGCACGTATAGATATATGACGCACGGTCCAATCAGATCAGTTTCGGAG 198
consensus_12210#2      ACTGAAGATTTACAAATTCTTGTATGTACT-CTCGTAGTCTCGTCCAACAAATAGCTCCG 197
                                                                                   

consensus_12210#3      CACGGCCAATGCCACTCAATGGANTGGTACTAGTGGTTACAATT-TGTAAACCTTT-TAC 225
consensus_12210#4      -----------------------------------------TTT-TTTATGTTACA-TTT 17
consensus_12210#0      AGTCGCTTGCAGAGTTTCATGTAGGACTCCAGGCTGCCAGATTCCTGTATGTTTCTCCGC 539
consensus_12210#1      AGTCGCTTGCAGAGTTTCATGTAGGACTCCAGGCTGCCAGATTCCTGTATGTTTCTCCGC 258
consensus_12210#2      ACGAGGATGAACAACTCGAATCGAGCTCCTTTTCAGCCAAAAATATACAAGGAACCGTAA 257
                                                                    *  *           

consensus_12210#3      AAAGGTNTGGGTCACCTTAGTAT-----CCTGTATTCCCCAATAATAATACCAGGGACCT 280
consensus_12210#4      AACTTTACAAGTTGCTCC----C-----TTTNGCTTTTCCCATAT--ATACCAGGACT-- 64
consensus_12210#0      AGGGCGGTCAGCACAGCTGCTCT----GTCTAGGTACTCTGGATACAAGCCCATGTCAAG 595
consensus_12210#1      AGGGCGGTCAGCACAGCTGCTCT----GTCTAGGTACTCTGGATACAAGCCCATGTCAAG 314
consensus_12210#2      ATATGTACCAGCTTGTTCACCCTCCCAGTCAGAGTCTTCTAGGC-TGTCTCCTTCACCAG 316
                       *         *                       *   *           **        

consensus_12210#3      AATACAAATTAGAAGGTCCGAAAGGCAAAGGTGTACATTGAATCGAACA-GGTCTCGGTG 339
consensus_12210#4      -ATACAA-TTAGAAGGTCCGAAAGGCAAAG-TGTACATTGA-TCGAC---AGTCTCGGTG 117
consensus_12210#0      CATCTTCATGAGTGTTTCCGAGGCCTCCAGATAAAAGCCGCCTTTGACATAGCCTCGTAG 655
consensus_12210#1      CATCTTCATGAGTGTTTCCGAGGCCTCCAGATAAAAGCCGCCTTTGACATAGCCTCGTAG 374
consensus_12210#2      AGCCCTCAAAAGCATTGTGAAG--CTCCAGCTTCACAT-GAGCATAATGTAACTTCA--- 370
                                 **        *       ** *  *    *              **    

consensus_12210#3      GTACGATACCCTACACCAACTATTGTCCTCGTTTCACCACCAACCGGGTGATGGCAGCAC 399
consensus_12210#4      -TACGATACCCTACACCAACTATTGTCCTCGTTTCACCACCAACCGG-TGATGGCAGCAC 175
consensus_12210#0      AAGCCATG----ACAGAGACT-TCTTCCTTCTTCCAGCACTGGTTGACT--CGACTCCAG 708
consensus_12210#1      AAGCCATG----ACAGAGACT-TCTTCCTTCTTCCAGCACTGGTTGACT--CGACTCCAG 427
consensus_12210#2      GAGCCA-G----ATAGGGTCA-CAGCATGTGCATCATCCATAGTTTG-T--GAACTTGCG 421
                          * *      * *    *              ** *          *     *     

consensus_12210#3      TGAAGA-TTTACAAATT-CTGTATGTACTCTC-GGTAGTCTCG-TCCAACAAA-TAGCTC 454
consensus_12210#4      TGAAGA-TTTACAAATT-CTGTATGTACGTCT-CGTAGTCTCGGTCCAACAAAATAGCTC 232
consensus_12210#0      CGAGCAATCGACGGACGGCAGCAACTTCTCCCTGAGAAGCGCAGATGGCCAAAACAACAT 768
consensus_12210#1      CGAGCAATCGACGGACGGCAGCAACTTCTCCCTGAGAAGCGCAGATGGCCAAAACAACAT 487
consensus_12210#2      CACGTA-TAGATATATTGACGCA-CTGGTCC--AATCAGATCAGTTTCGGAGAGTCGC-T 476
                            * *  *   *     * *  *               *        * *    *  

consensus_12210#3      CGACGA------------------------------------------------------ 460
consensus_12210#4      CGACGAGGATGAACAACTCGAATCGAGCTCCTTTTCAGCCAAAAAAGTAATAGCAAGGGA 292
consensus_12210#0      CATAGAGCTGTG-TGTCAGGTTCCCTACCAAGAAGCTTCATTTCCCAAAGTTGGTGCTCA 827
consensus_12210#1      CATAGAGCTGTG-TGTCAGGTTCCCTACCAAGAAGCTTCATTTCCCAAAGTTGCT-CGTG 545
consensus_12210#2      TGCAGAGTTTCACTGTCAGGACTCCAGGCGTG--GCAGATTCCCTGNATGTTTCTCCG-A 533
                           **                                                      

consensus_12210#3      ------------------------------------------------------------
consensus_12210#4      ACCGGTAAGAGTAGTGTACCAGCAGTGCTTCACGCCGTCCGCGAGAGTCC---------- 342
consensus_12210#0      GCTTCTAAGCCACAACCAGCGCAAGTGTACAATGAAAGGAGCCTCTCGTGCACAAGTCCT 887
consensus_12210#1      CCGAATTCGGCACG---------------------------------------------- 559
consensus_12210#2      CAGGGGTGGGTCCAG--------------------------------------------- 548
                                                                                   

consensus_12210#3      ------------------------------------------------------------
consensus_12210#4      ------------------------------------------------------------
consensus_12210#0      AGGACATCACTGCTGCCTTACTCAATTGCCCATTTTGATAAAAGAACACCATCACTTAAT 947
consensus_12210#1      ------------------------------------------------------------
consensus_12210#2      ------------------------------------------------------------
                                                                                   

consensus_12210#3      ------------------------------------------------------------
consensus_12210#4      ------------------------------------------------------------
consensus_12210#0      AATTCACATTGGTAATTTTCAATACTATGCATAGTCTCAGAGTCAAGTTTGGAAATCGAG 1007
consensus_12210#1      ------------------------------------------------------------
consensus_12210#2      ------------------------------------------------------------
                                                                                   

consensus_12210#3      ------------------------------------------------------------
consensus_12210#4      ------------------------------------------------------------
consensus_12210#0      CCCACCTTCACCGATGAATTCAATGTCCGCAATGCCTCTGAGAATCCTTTTGTCTTTAAC 1067
consensus_12210#1      ------------------------------------------------------------
consensus_12210#2      ------------------------------------------------------------
                                                                                   

consensus_12210#3      ------------------------------------------------------------
consensus_12210#4      ------------------------------------------------------------
consensus_12210#0      CATGCAGTCAACCAATAAGATACTATACACTCANGGTGAAGCCACTCTCTAGATCATGAT 1127
consensus_12210#1      ------------------------------------------------------------
consensus_12210#2      ------------------------------------------------------------
                                                                                   

consensus_12210#3      ------------------------------------------------------------
consensus_12210#4      ------------------------------------------------------------
consensus_12210#0      CATTACAGCTGCCGTATCCATCATATATCTCACCAAGATCGACGCCTCGGCTGCGTGTAG 1187
consensus_12210#1      ------------------------------------------------------------
consensus_12210#2      ------------------------------------------------------------
                                                                                   

consensus_12210#3      ------------------------------------------------------------
consensus_12210#4      ------------------------------------------------------------
consensus_12210#0      ACGCATATCCTCGTGCACGCAGCAAGCCTTTCCAGACTCTGACATAGGCTTCCGTTGCGG 1247
consensus_12210#1      ------------------------------------------------------------
consensus_12210#2      ------------------------------------------------------------
                                                                                   

consensus_12210#3      ------------------------------------------------------------
consensus_12210#4      ------------------------------------------------------------
consensus_12210#0      CATAAACACGCTTTAAGTGACCGGCGGCGAGATATCTTCTACTGAAGGGGAATGCCCCCC 1307
consensus_12210#1      ------------------------------------------------------------
consensus_12210#2      ------------------------------------------------------------
                                                                                   

consensus_12210#3      -----------------------------------------
consensus_12210#4      -----------------------------------------
consensus_12210#0      GCTCCAAAAAGGTTGCTCCATAGAGAATTACAATCTCATCC 1348
consensus_12210#1      -----------------------------------------
consensus_12210#2      -----------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)