Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12212 cluster # 12212       Sequences # 10       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12212#0 length = 538 sequences # 10  

consensusID : consensus_12212#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 538
fasta sequence
                              [CAAGACTCATCACAGATTCACACAAACCAGGAGAAAGAGAAGGAGATCGAGCGATCGAGGTGCCCGT-C-GATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCGACA-A-TG-AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT-CGATCGATCCCAC-TGAAGC-TTGCAATCAC-GTTCGA-TTGGATTAAACTTC-GTTT-GGTGCTCTA--GGGGAGC-TTTTCAACAATATAATTCATATAGCAGTATATTTTT-ATTTGAGTTAGTAATGACTTCTATATATCTCTACTATCACAAAAATTTAAGTTGTTTTTACCGATATTTTGGTA]

[+] EMBL AK106977             [    ACTCATCACAGATTCACACAAACCAGGAGAAAGAGAAGGAGATCGAGCGATCGAGGTGCCCGT C GATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCGACA A TG AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT CGATCGATCCCAC TGAAGC TTGCAATCAC GTTCGA TTGGATTAAACTTC GTTT GGTGCTCTA  GGGGAGC TTTTCAACAATATAATTCATATAGCAGTATATTTTT ATTTGAGTTAGTAATGACTTCTATATATCTCTACTATCACAAAAATTTAAGTTGTTTTTACCGATATTTTGGTA]
[-] EMBL CA760227             [caagggggATCCCAGATTCCCCCAAACCAGGAGAAAGAGAAGGAGATCGAGCGATCGAGGTGCCCGT C GATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACATGACCGCCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACAGCCGTCGAGGATGTGGGCGTCTCCGCCGACA A TG AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT CGATCGATCCCAC TGAAGC TTGCAATCAC GTTCGA TTGGATTAAACTTC GTTT GGTGCTCTA  GGGGAGC TTTTCACCAATATAATTCATATAGCAGTATATTTTT ATTTGAGTTAGTAATGACTT                                                      ]
[+] EMBL C73338               [                             GGAGAAAGAGAAGGAGATCGAGCGATCGAGGTGCCCGT C GATCATCTGTNAAGCTAGCTATATTAGCTCGGTTCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCG CATA TGNAAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGNTGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT CGATCGATTCCAC TGAAGC TTGCAATCAC GTTCGATTTGGNTTAAACTTC GTTT GGTGCTCTA  GGGGAGCTTTTTCAACAATATAATTCATATAGCAG                                                                                    ]
[+] EMBL AU064755             [                                GAAAGAGAAGGAGATCGAGCGATCGAGGTGCCCGT C GATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCGACANA TG AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGATCCGNTCGATCCCACTTGAAGCTTTTCAATCACGGTTCc                                                                                                                                                        ]
[+] EMBL AU064170             [                                GAAAGAGAAGGAGATCGAGCGATCGAGGTGCCCGT C GATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCG CA ATTG AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT CGATCGATCCCACTTGAAGC TTGCAATCAC GTTCGA TTGGATTAAACTTC GTTT NGTGCTCTA  GGGGAGC TTTTCAACAATATAATTCATATAGCAGTATATTTTTAATTTGAG                                                                   ]
[+] EMBL AU075660             [                                 AAAGAGAAGGAGATCGANCGATCGAGGTGCCCGT CGGATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCGACA A TG AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT CGATCGATCCCAC TGAAGC TTGCAATCAC GTTCGA TTGGATTAAACTTC GTTT GGTGCTCTA  GGGGAGC TTTTCAACAATATAATTCATATAGCAGTATATTTTT ATTTGAGTTAGTAATGACTTCTATATATCTCTACTATCACAAAAATTTAAGTTGTTTTTACCGATATTTTGGTA]
[+] EMBL AU075735             [                                 AAAGAGAAGGAGATCGAGCGATCGAGGTGCCCGT C GATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCGACA A TG AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT CGATCGATCCCAC TGAAGC TTGCAATCAC GTTCGA TTGGATTAAA TTC GTTT GGTGCTCTA  GGGGAGC TTTTCAACAATATAATTCATATAGCAGTATATTTTT ATTTGAGTTAGTAATGACTTCTATATATCTCTACTATNACAAAAATTTAAGTTGTTTTTACCGATATTTTGGTA]
[+] EMBL AU097612             [                                                 AGCGATCGAGGTGCCCGT C GATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCGACA A TG AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT CGATCGATCCCAC TGAAGC TTGCAATCAC GTTCGA TTGGATTAAACTTC GTTT GGTGCTCTA  GGGGAGC TTTTCAACAATATAATTCATATAGCAGTATATTTTT ATTTGAGTTAGTAATGACTTCTATATATCTCTACTATCACAAAAATTTAAGTTGTTTTTACCGATAaaaa    ]
[+] EMBL C73402               [                                                 AGCGATCGAGGTGCCCGT C GATCATCTGTNAAGCTAGCTATATNAGCTCGGNTCGCCATGGCGAAAGCNAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGANGTCGGCGTCTCCGCCG CA ATTN AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACAC                                                                                                                                                                                                                                                               ]
[+] EMBL C73506               [                                                         AGGTGCCCGTGC GATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGNCGTCGAGGATGTCGGCGTCTCCGCCG CANN TG AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT CGATCGATCCCACTTGAAGC TTGCAATCAC GTTCGA TTGGATTAAACTTCGGTTTGGGTGCTCTAAGGGGGAGC TTTTCAACAATATNANTCATATAa                                                                                       ]


>consensus_12212#0 CAAGACTCATCACAGATTCACACAAACCAGGAGAAAGAGAAGGAGATCGAGCGATCGAGG TGCCCGTCGATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAG GGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGT CGAGGATGTCGGCGTCTCCGCCGACAATGAAATCGGCTACACGACCATGAACCACGACGA CATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGG ATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGATC GATCGATCCCACTGAAGCTTGCAATCACGTTCGATTGGATTAAACTTCGTTTGGTGCTCT AGGGGAGCTTTTCAACAATATAATTCATATAGCAGTATATTTTTATTTGAGTTAGTAATG ACTTCTATATATCTCTACTATCACAAAAATTTAAGTTGTTTTTACCGATATTTTGGTA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)