These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12212#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 538 fasta sequence [CAAGACTCATCACAGATTCACACAAACCAGGAGAAAGAGAAGGAGATCGAGCGATCGAGGTGCCCGT-C-GATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCGACA-A-TG-AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT-CGATCGATCCCAC-TGAAGC-TTGCAATCAC-GTTCGA-TTGGATTAAACTTC-GTTT-GGTGCTCTA--GGGGAGC-TTTTCAACAATATAATTCATATAGCAGTATATTTTT-ATTTGAGTTAGTAATGACTTCTATATATCTCTACTATCACAAAAATTTAAGTTGTTTTTACCGATATTTTGGTA] [+] EMBL AK106977 [ ACTCATCACAGATTCACACAAACCAGGAGAAAGAGAAGGAGATCGAGCGATCGAGGTGCCCGT C GATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCGACA A TG AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT CGATCGATCCCAC TGAAGC TTGCAATCAC GTTCGA TTGGATTAAACTTC GTTT GGTGCTCTA GGGGAGC TTTTCAACAATATAATTCATATAGCAGTATATTTTT ATTTGAGTTAGTAATGACTTCTATATATCTCTACTATCACAAAAATTTAAGTTGTTTTTACCGATATTTTGGTA] [-] EMBL CA760227 [caagggggATCCCAGATTCCCCCAAACCAGGAGAAAGAGAAGGAGATCGAGCGATCGAGGTGCCCGT C GATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACATGACCGCCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACAGCCGTCGAGGATGTGGGCGTCTCCGCCGACA A TG AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT CGATCGATCCCAC TGAAGC TTGCAATCAC GTTCGA TTGGATTAAACTTC GTTT GGTGCTCTA GGGGAGC TTTTCACCAATATAATTCATATAGCAGTATATTTTT ATTTGAGTTAGTAATGACTT ] [+] EMBL C73338 [ GGAGAAAGAGAAGGAGATCGAGCGATCGAGGTGCCCGT C GATCATCTGTNAAGCTAGCTATATTAGCTCGGTTCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCG CATA TGNAAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGNTGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT CGATCGATTCCAC TGAAGC TTGCAATCAC GTTCGATTTGGNTTAAACTTC GTTT GGTGCTCTA GGGGAGCTTTTTCAACAATATAATTCATATAGCAG ] [+] EMBL AU064755 [ GAAAGAGAAGGAGATCGAGCGATCGAGGTGCCCGT C GATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCGACANA TG AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGATCCGNTCGATCCCACTTGAAGCTTTTCAATCACGGTTCc ] [+] EMBL AU064170 [ GAAAGAGAAGGAGATCGAGCGATCGAGGTGCCCGT C GATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCG CA ATTG AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT CGATCGATCCCACTTGAAGC TTGCAATCAC GTTCGA TTGGATTAAACTTC GTTT NGTGCTCTA GGGGAGC TTTTCAACAATATAATTCATATAGCAGTATATTTTTAATTTGAG ] [+] EMBL AU075660 [ AAAGAGAAGGAGATCGANCGATCGAGGTGCCCGT CGGATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCGACA A TG AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT CGATCGATCCCAC TGAAGC TTGCAATCAC GTTCGA TTGGATTAAACTTC GTTT GGTGCTCTA GGGGAGC TTTTCAACAATATAATTCATATAGCAGTATATTTTT ATTTGAGTTAGTAATGACTTCTATATATCTCTACTATCACAAAAATTTAAGTTGTTTTTACCGATATTTTGGTA] [+] EMBL AU075735 [ AAAGAGAAGGAGATCGAGCGATCGAGGTGCCCGT C GATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCGACA A TG AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT CGATCGATCCCAC TGAAGC TTGCAATCAC GTTCGA TTGGATTAAA TTC GTTT GGTGCTCTA GGGGAGC TTTTCAACAATATAATTCATATAGCAGTATATTTTT ATTTGAGTTAGTAATGACTTCTATATATCTCTACTATNACAAAAATTTAAGTTGTTTTTACCGATATTTTGGTA] [+] EMBL AU097612 [ AGCGATCGAGGTGCCCGT C GATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCGACA A TG AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT CGATCGATCCCAC TGAAGC TTGCAATCAC GTTCGA TTGGATTAAACTTC GTTT GGTGCTCTA GGGGAGC TTTTCAACAATATAATTCATATAGCAGTATATTTTT ATTTGAGTTAGTAATGACTTCTATATATCTCTACTATCACAAAAATTTAAGTTGTTTTTACCGATAaaaa ] [+] EMBL C73402 [ AGCGATCGAGGTGCCCGT C GATCATCTGTNAAGCTAGCTATATNAGCTCGGNTCGCCATGGCGAAAGCNAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGANGTCGGCGTCTCCGCCG CA ATTN AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACAC ] [+] EMBL C73506 [ AGGTGCCCGTGC GATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTCGTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGNCGTCGAGGATGTCGGCGTCTCCGCCG CANN TG AAATCGGCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACGCGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGAT CGATCGATCCCACTTGAAGC TTGCAATCAC GTTCGA TTGGATTAAACTTCGGTTTGGGTGCTCTAAGGGGGAGC TTTTCAACAATATNANTCATATAa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||