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Oryza sativa
cluster # 12213 cluster # 12213       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12213#0 length = 1652 sequences # 8  
consensus_12213#1 length = 698 sequences # 2  

consensusID : consensus_12213#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1652
fasta sequence
                              [GACCCTCCTGACCTCCCCGAGCCCCAACACGACGACACGGAGCACAAACCTCCCGCGCCTCACCACTTCCCCTCGCCTCCGCCGCCCCCACTTGGCCACATCTCCTCCGGTCTCGGTCCCCGCGGCGGCGGCGGCGGAGGAGCTCGCCCATGTTGTTCCGCGGACTTCTCGCTTGGGCTGTCGGGTAGGGAACCCTGAGAAAACGCATACCGGCGGTCGCGGAGAGCAGAGCAAAGGCGGGGGATGGGGTACCTGCCGTCGCTGGGCGGGAAGGCGGCGCACCTGGTGTCCGACCTCGCCACCGTCATCCTCAACCCCGTCTCCGAGCGGGAGAGCCAGCGCCACCCCTCCCACCTCCCCGAGGCCACTGAAGTGCAAGAAAATATCTATGAGGATGACGATGATGATAATTCAGTCAAGAATTCTGAGATTCCTAATGGCCCTGACACATCTTCCTTCAGAGCATTCCTGATGTCATTTATGTCGTCATCAAACTCCAGCAGTGATTCTATAGAAATCATACCTGAGCACAATATGAATATGGAATATCCAACTTTAACACCTGTTGGGAAGGGAAGCAATGGAAGGAAGGGCCTGTTTAGCAGAGGGAAGCATTCCATTGGAAAAATCATTAACAAAGCAGGCAGAATTGGTGGTTTCAGACAAAAACCCAGCTACAGCATTGATGGTGAAACTGTTCAAACAGAATATGATGCACCTGGGTTGGAACTTAAGGGATCAAAGGAATCTGCTTCACATGATAAGTTACCAGCCATGTCTGAACCATCAATGCTTTTGTCTGAAACAATGCGAACTGTTCTTTATACATCTCTTCCTGTACTTGTCCAAGGAAGGAACTGG-ATGTTGGTATACAGTACCTGGAGACATGGAATATCTTTATCTACTCTGTATAGAAGGAGCATGCTTTGTGCAGGCTACTCACTTTTGATAGTTGGGGATCGAAAAGGAGCGGTTTTCGGTGGGTTGGTTGAGGCCCCATTGCAACCATTAATAAAAAAGAAGTATCAGGGGACCAACAACTGCTTTGTGTTCACCAATATAGCTGGCCGTCCTGTTATATATC-GTCCAACAGGTGCTAATAACTATTTCACATTTTGCTCCACCGATTATTTGGCAATGGGAGGTGGTGGTCACTTTGCACTTTATCTTGATGGAGACCTTCTGAATGGTTCAAGTTCCACTTCAGAGACATTTAACAACCCGTGCTTATCACGTTCCCGGGAGTTTGAAGTCAAAGATGTCGAGCTATGGGGCTTCGTCAATGCTTCCA-AGTATGATGAGATGCTCACTATCTGCCGTACTGAGAAGCA-AGGGATCTGGAATCTGTGACTGTCTGTTTACA-ATTGATCTGAGCTG-TTTAGTGCTTGTACCTGATGCCAACCCATCCTGGTGGTTTGTACAGTTTTGTAGTTCTGTCTGTTAAGTATAGTATATATAGGCCTTGTTGGAGTTCTGTCTGTATGTATAGTAAAATGCCCCTTGTAAAACAAGTTCATCAACGGAGTTATGGAGCTTAAAATGAGTAACTCTGAAACATGAATCGAGCAACTGCCAAAGCTGATCCTTGTAAATATTGTACCGTACCATAGCTTCCTGAAGAAAATGCAGTGGAATTCAGGCAAAAAAAAAAA]

[+] EMBL AK102978             [GACCCTCCTGACCTCCCCGAGCCCCAACACGACGACACGGAGCACAAACCTCCCGCGCCTCACCACTTCCCCTCGCCTCCGCCGCCCCCACTTGGCCACATCTCCTCCGGTCTCGGTCCCCGCGGCGGCGGCGGCGGAGGAGCTCGCCCATGTTGTTCCGCGGACTTCTCGCTTGGGCTGTCGGGTAGGGAACCCTGAGAAAACGCATACCGGCGGTCGCGGAGAGCAGAGCAAAGGCGGGGGATGGGGTACCTGCCGTCGCTGGGCGGGAAGGCGGCGCACCTGGTGTCCGACCTCGCCACCGTCATCCTCAACCCCGTCTCCGAGCGGGAGAGCCAGCGCCACCCCTCCCACCTCCCCGAGGCCACTGAAGTGCAAGAAAATATCTATGAGGATGACGATGATGATAATTCAGTCAAGAATTCTGAGATTCCTAATGGCCCTGACACATCTTCCTTCAGAGCATTCCTGATGTCATTTATGTCGTCATCAAACTCCAGCAGTGATTCTATAGAAATCATACCTGAGCACAATATGAATATGGAATATCCAACTTTAACACCTGTTGGGAAGGGAAGCAATGGAAGGAAGGGCCTGTTTAGCAGAGGGAAGCATTCCATTGGAAAAATCATTAACAAAGCAGGCAGAATTGGTGGTTTCAGACAAAAACCCAGCTACAGCATTGATGGTGAAACTGTTCAAACAGAATATGATGCACCTGGGTTGGAACTTAAGGGATCAAAGGAATCTGCTTCACATGATAAGTTACCAGCCATGTCTGAACCATCAATGCTTTTGTCTGAAACAATGCGAACTGTTCTTTATACATCTCTTCCTGTACTTGTCCAAGGAAGGAACTGG ATGTTGGTATACAGTACCTGGAGACATGGAATATCTTTATCTACTCTGTATAGAAGGAGCATGCTTTGTGCAGGCTACTCACTTTTGATAGTTGGGGATCGAAAAGGAGCGGTTTTCGGTGGGTTGGTTGAGGCCCCATTGCAACCATTAATAAAAAAGAAGTATCAGGGGACCAACAACTGCTTTGTGTTCACCAATATAGCTGGCCGTCCTGTTATATATC GTCCAACAGGTGCTAATAACTATTTCACATTTTGCTCCACCGATTATTTGGCAATGGGAGGTGGTGGTCACTTTGCACTTTATCTTGATGGAGACCTTCTGAATGGTTCAAGTTCCACTTCAGAGACATTTAACAACCCGTGCTTATCACGTTCCCGGGAGTTTGAAGTCAAAGATGTCGAGCTATGGGGCTTCGTCAATGCTTCCA AGTATGATGAGATGCTCACTATCTGCCGTACTGAGAAGCA AGGGATCTGGAATCTGTGACTGTCTGTTTACA ATTGATCTGAGCTG TTTAGTGCTTGTACCTGATGCCAACCCATCCTGGTGGTTTGTACAGTTTTGTAGTTCTGTCTGTTAAGTATAGTATATATAGGCCTTGTTGGAGTTCTGTCTGTATGTATAGTAAAATGCCCCTTGTAAAACAAGTTCATCAACGGAGTTATGGAGCTTAAAATGAGTAACT                                                                                                       ]
[+] EMBL CB685888             [                                                                                                                                                 GCCCATGTTGTTCCGCGGACTTCTCGCTTGGGCTGTCGGGTAGGGAACCCTGAGAAAACGCATACCGGCGGTCGCGGAGAGCAGAGCAAAGGCGGGGGATGGGGTACCTGCCGTCGCTGGGCGGGAAGGCGGCGCACCTGGTGTCCGACCTCGCCACCGTCATCCTCAACCCCGTCTCCGAGCGGGAGAGCCAGCGCCACCCCTCCCACCTCCCCGAGGCCACTGAAGTGCAAGAAAATATCTATGAGGATGACGATGATGATAATTCAGTCAAGAATTCTGAGATTCCTAATGGCCCTGACACATCTTCCTTCAGAGCATTCCTGATGTCATTTATGTCGTCATCAAACTCCAGCAGTGATTCTATAGAAATCATACCTGAGCACAATATGAATATGGAATATCCAACTTTAACACCTGTTGGGAAGGGAAGCAATGGAAGGAAGGGCCTGTTTAGCAGAGGGAAGCATTCCATTGGAAAAATCATTAACAAAGCAGGCAGAATTGGTGGTTTCAGACAAAAACCCAGCTACAGCATTGATGGTGAAACTGTTCAAACAGAATATGATGCACCTGGGTTGGAACTTAAGGGATCAAAGGAATCTGCTTCACATGATAAGTTACCAGCCATGTCTGAACCATCAATGCTTTTGTCTGAAACAATGCGAACTGTTCTTTATACATCTCTTCCTGTACTTGTCCAAGGAAGGAACTGG ATGTTGGTATACAGTACCTGGAGACATGGAATATCTTTATCTACTCTGTATAGAAGGAGCATGCTTTGTGCAGGCTACTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB666508             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAAGGGAAGCAATGGAAGGAAGGGCCTGTTTAGCAGAGGGAAGCATTCCATTGGAAAAATCATTAACAAAGCAGGCAGAATTGGTGGTTTCAGACAAAAACCCAGCTACAGCATTGATGGTGAAACTGTTCAAACAGAATATGATGCACCTGGGTTGGAACTTAAGGGATCAAAGGAATCTGCTTCACATGATAAGTTACCAGCCATGTCTGAACCATCAATGCTTTTGTCTGAAACAATGCGAACTGTTCTTTATACATCTCTTCCTGTACTTGTCCAAGGAAGGAACTGG ATGTTGGTATACAGTACCTGGAGACATGGAATATCTTTATCTACTCTGTATAGAAGGAGCATGCTTTGTGCAGGCTACTCACTTTTGATAGTTGGGGATCGAAAAGGAGCGGTTTTCGGTGGGTTGGTTGAGGCCCCATTGCAACCATTAATAAAAAAGAAGTATCAGGGGACCAACAACTGCTTTGTGTTCACCAATATAGCTGGCCGTCCTGTTATATATC GTCCAACAGGTGCTAATAACTATTTCACATTTTGCTCCACCGATTATTTGGCAATGGGAGGTGGTGGTCACTTTGCACTTTATCTTGATGGAGACCTTCTGAATGGTTCAAGTTCCACTTCAGAGACATTTAACAACCCGTGCTTATCACGTTCCCGGGAGTTTGAAGTCAAAGATGTCGAGCTATGGGGCTTCGTCAATGCTTCCA AGTATGATGAGATGCTCACTATCTGCCGTACTGAGAAGCA AGGGATCTGGAATCTGTGACTGTCTGTTTANC ATTGATCTGAGCTG TTTAGTGCTTG                                                                                                                                                                                                                                                                        ]
[+] EMBL AU031597             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACATCTCTTCCTGTACTTGTCCAAGGAAGGAACTGGNATGTTGGTATACAGTACCTGGAGACATGGAATATCTTTATCTACTCTGTATAGAAGGAGCATGCTTTGTGCAGGCTACTCACTTTTGATAGTTGGGGATCGAAAAGGAGCGGTTTTCGGTGGGTTGGTTGAGGCCCCATTGCAACCATTAATAAAAAAGAAGTATCAGGGGACCAACAACTGCTTTGTGTTCACCAATATAGCTGGCCGTCCTGTTATATATC GTCCAACAGGTGCTAATAACTATTTCACATTTTGCTCCACCGATTATTTGGCAATGGGAGGTGGTGGTCACTTTGCACTTTATCTTGATGGAGACCTTCTGAATGGTTCAAGTTCCACTTCAGAGACATTTAACAACCCGTGCTTATCACGTTCCCGGGAGTTTGAAGTCAAAGATGTCGAGCTATGGGGCTTCGTCAATGCTTCCA AGTATGATGAGATGCTCACTATCTGCCGTACTGAGAAGCA AGGGATCTGGAATCTGTGACTGTCTGTTTACA ATTGATCTGAGCTG TTTAGTGCTTGTACCTGATGCCAACCCATCCTGGTGGTTTGTACAGTTTTGTAGTTCTGTCTGTTAAGTATAGTATATATAGGCCTTGTTGGAG TCTGTCTGTATGGATAGTAAAATGCCCCTTGTAAAACAAGTCCATCAA                                                                                                                                    ]
[-] EMBL CB685889             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGGAGACATGGAATATCTTTATCTACTCTGTATAGAAGGAGCATGCTTTGTGCAGGCTACTCACTTTTGATAGTTGGGGATCGAAAAGGAGCGGTTTTCGGTGGGTTGGTTGAGGCCCCATTGCAACCATTAATAAAAAAGAAGTATCAGGGGACCAACAACTGCTTTGTGTTCACCAATATAGCTGGCCGTCCTGTTATATATC GTCCAACAGGTGCTAATAACTATTTCACATTTTGCTCCACCGATTATTTGGCAATGGGAGGTGGTGGTCACTTTGCACTTTATCTTGATGGAGACCTTCTGAATGGTTCAAGTTCCACTTCAGAGACATTTAACAACCCGTGCTTATCACGTTCCCGGGAGTTTGAAGTCAAAGATGTCGAGCTATGGGGCTTCGTCAATGCTTCCA AGTATGATGAGATGCTCACTATCTGCCGTACTGAGAAGCA AGGGATCTGGAATCTGTGACTGTCTGTTTACA ATTGATCTGAGCTG TTTAGTGCTTGTACCTGATGCCAACCCATCCTGGTGGTTTGTACAGTTTTGTAGTTCTGTCTGTTAAGTATAGTATATATAGGCCTTGTTGGAGTTCTGTCTGTATGTATAGTAAAATGCCCCTTGTAAAACAAGTTCATCAACGGAGTTATGGAGCTTAAAATGAGTAACTCTGAAACATGAATCGAGCAACTGCCAAAGCTGATCCTTGTAAATATTGTACCGTACCATAGCTTCCTGAAGA                               ]
[-] EMBL CB666509             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGCTTTGTGCAGGCTACTCACTTTTGATAGTTGGGGATCGAAAAGGAGCGGTTTTCGGTGGGTTGGTTGAGGCCCCATTGCAACCATTAATAAAAAAGAAGTATCAGGGGACCAACAACTGCTTTGTGTTCACCAATATAGCTGGCCGTCCTGTTATATATC GTCCAACAGGTGCTAATAACTATTTCACATTTTGCTCCACCGATTATTTGGCAATGGGAGGTGGTGGTCACTTTGCACTTTATCTTGATGGAGACCTTCTGAATGGTTCAAGTTCCACTTCAGAGACATTTAACAACCCGTGCTTATCACGTTCCCGGGAGTTTGAAGTCAAAGATGTCGAGCTATGGGGCTTCGTCAATGCTTCCA AGTATGATGAGATGCTCACTATCTGCCGTACTGAGAAGCA AGGGATCTGGAATCTGTGACTGTCTGTTTACA ATTGATCTGAGCTG TTTAGTGCTTGTACCTGATGCCAACCCATCCTGGTGGTTTGTACAGTTTTGTAGTTCTGTCTGTTAAGTATAGTATATATAGGCCTTGTTGGAGTTCTGTCTGTATGTATAGTAAAATGCCCCTTGTAAAACAAGTTCATCAACGGAGTTATGGAGCTTAAAATGAGTAACTCTGAAACATGAATCGAGCAACTGCCAAAGCTGATCCTTGTAAATATTGTACCGTACCATAGCTTCCTGAAGA                               ]
[+] EMBL BM419504             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCCTGTTATATATCGGTCC ACAGGTGCTAATAACTATTTCACATTTTGCTCCACCGATTATTTGGCAATGGGA GTGGTGGTCACTTTGCACTTTATCTTGATGGAGACCTTCTGAATGGTTCAAGTTCCACTTCAGAGACATTTAAC ACCCGTGCTTATCACGTTCCCGGGAGTTTGAAGTCAAAGATGTCGAGCTATGGGGCTTCGTCAATGCTTCCA AGTATGATGAGATGCTCACTATCTGCCGTACTGAGAAGCA AGGGATCTGGAATCTGTGACTGTCTGTTTACA ATTGATCTGAGCTG TTTAGTGCTTGTACCTGATGCCAACCCATCCTGGTGGTTTGTACAGTTTTGTAGTTCTGTCTGTTAAGTATAGTATATATAGGCCTTGTTGGAGTTCTGTCTGTATGTATAGTAAAATGCCCCTTGTAAAACAAGTTCATCAACGGAGTTATGGAGCTTAAAATGAGTAACTCTGAAACATGAATCGAGC ACTGCC AAGCTGATCCTTGTAAATATTGTACCGTACCATAGCTTCCTGAAGAAAATGCAGTGGAATTCAGGCAAAAAAA    ]
[+] EMBL BI813070             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TATCACGTTCCCGGGAGTTTGAAGTCAAAGATGTCGAGCTATGGGGCTTCGTCAATGCTTCCACAGTATGATGAGATGCTCACTATCT CCGTACTGAGAACCACAGGGATCTGGAATCTGTGACTGTCTGTTTACACATTGATCTGA CTGTTTTAGTGCTTGTACCTGATGCCAACCCATCCTGGTGGTTTGTACAGTTTTGTAGTTCTGTCTGTTAAGTATAGTATATATA GCCTTGTTGGAGTTCTGTCTGTATGTATAGTAAAATGCCCCTTGTAAAACCAGTTCATC ACGGAGTTATGGAGCTTAAAATGAGTAACTCTGAAACATGAATCGAGC ACTGCCCAAGCTGATCCTTGTAAATATTGTACCGTACCATAGCTTCCTGAAGAAAATGCCGTGGAATTCAGGCCAAAAAAAAAA]


>consensus_12213#0 GACCCTCCTGACCTCCCCGAGCCCCAACACGACGACACGGAGCACAAACCTCCCGCGCCT CACCACTTCCCCTCGCCTCCGCCGCCCCCACTTGGCCACATCTCCTCCGGTCTCGGTCCC CGCGGCGGCGGCGGCGGAGGAGCTCGCCCATGTTGTTCCGCGGACTTCTCGCTTGGGCTG TCGGGTAGGGAACCCTGAGAAAACGCATACCGGCGGTCGCGGAGAGCAGAGCAAAGGCGG GGGATGGGGTACCTGCCGTCGCTGGGCGGGAAGGCGGCGCACCTGGTGTCCGACCTCGCC ACCGTCATCCTCAACCCCGTCTCCGAGCGGGAGAGCCAGCGCCACCCCTCCCACCTCCCC GAGGCCACTGAAGTGCAAGAAAATATCTATGAGGATGACGATGATGATAATTCAGTCAAG AATTCTGAGATTCCTAATGGCCCTGACACATCTTCCTTCAGAGCATTCCTGATGTCATTT ATGTCGTCATCAAACTCCAGCAGTGATTCTATAGAAATCATACCTGAGCACAATATGAAT ATGGAATATCCAACTTTAACACCTGTTGGGAAGGGAAGCAATGGAAGGAAGGGCCTGTTT AGCAGAGGGAAGCATTCCATTGGAAAAATCATTAACAAAGCAGGCAGAATTGGTGGTTTC AGACAAAAACCCAGCTACAGCATTGATGGTGAAACTGTTCAAACAGAATATGATGCACCT GGGTTGGAACTTAAGGGATCAAAGGAATCTGCTTCACATGATAAGTTACCAGCCATGTCT GAACCATCAATGCTTTTGTCTGAAACAATGCGAACTGTTCTTTATACATCTCTTCCTGTA CTTGTCCAAGGAAGGAACTGGATGTTGGTATACAGTACCTGGAGACATGGAATATCTTTA TCTACTCTGTATAGAAGGAGCATGCTTTGTGCAGGCTACTCACTTTTGATAGTTGGGGAT CGAAAAGGAGCGGTTTTCGGTGGGTTGGTTGAGGCCCCATTGCAACCATTAATAAAAAAG AAGTATCAGGGGACCAACAACTGCTTTGTGTTCACCAATATAGCTGGCCGTCCTGTTATA TATCGTCCAACAGGTGCTAATAACTATTTCACATTTTGCTCCACCGATTATTTGGCAATG GGAGGTGGTGGTCACTTTGCACTTTATCTTGATGGAGACCTTCTGAATGGTTCAAGTTCC ACTTCAGAGACATTTAACAACCCGTGCTTATCACGTTCCCGGGAGTTTGAAGTCAAAGAT GTCGAGCTATGGGGCTTCGTCAATGCTTCCAAGTATGATGAGATGCTCACTATCTGCCGT ACTGAGAAGCAAGGGATCTGGAATCTGTGACTGTCTGTTTACAATTGATCTGAGCTGTTT AGTGCTTGTACCTGATGCCAACCCATCCTGGTGGTTTGTACAGTTTTGTAGTTCTGTCTG TTAAGTATAGTATATATAGGCCTTGTTGGAGTTCTGTCTGTATGTATAGTAAAATGCCCC TTGTAAAACAAGTTCATCAACGGAGTTATGGAGCTTAAAATGAGTAACTCTGAAACATGA ATCGAGCAACTGCCAAAGCTGATCCTTGTAAATATTGTACCGTACCATAGCTTCCTGAAG AAAATGCAGTGGAATTCAGGCAAAAAAAAAAA



consensusID : consensus_12213#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 698
fasta sequence
                              [GGAGACATGGAATATCTTTATCACTCTGTATAGAAGGAGCATGCTTTGTGCAGGCTACTCACTTTTGATAGTTGGGGATCGAAAAGGAGCGGTTTTCGGTGGGTTGGTTGAGGCCCCATTGCAACCATTAATAAAAAAGAAGTATCAGGGGACCAACAACTGCTTTGTGTTCACCAATATAGCTGGCCGTCCTGTTATATATCGTCCAACAGGTGCTAATAACTATTTCACATTTTGCTCCACCGATTATTTGGCAATGGGAGGTGGTGGTCACTTTGCACTTTATCTTGATGGAGACCTTCTGAATGGTTCAAGTTCCACTTCAGAGACATTTAACAACCCGTGCTTATCACGTTCCCGGGAGTTTGAAGTCAAAGATGTCGAGCTATGGGGCTTCGTCAATGCTTCCAAGTATGATGAGATGCTCACTATCTGCCGTACTGAGAAGCAAGGGATCTGGAATCTGTGACTGTCTGTTTACAATTGATCTGAGCTGTTTAGTGCTTGTACCTGATGCCAACCCATCCTGGTGGTTTGTACAGTTTTGTAGTTCTGTCTGTTAAGTATAGTATATATAGGCCTTGTTGGAGTTCTGTCTGTATGTATAGTAAAATGCCCCTTGTAAAACAAGTTCATCAACGGAGTTATGGAGCTTAAAATGAGTAACTCTGAAACAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU031598             [GGAGACATGGAATATCTTTATCACTCTGTATAGAAGGAGCATGCTTTGTGCAGGCTACTCACTTTTGATAGTTGGGGATCGAAAAGGAGCGGTTTTCGGTGGGTTGGTTGAGGCCCCATTGCAACCATTAATAAAAAAGAAGTATCAGGGGACCAACAACTGCTTTGTGTTCACCAATATAGCTGGCCGTCCTGTTATATATCGTCCAACAGGTGCTAATAACTATTTCACATTTTGCTCCACCGATTATTTGGCAATGGGAGGTGGTGGTCACTTTGCACTTTATCTTGATGGAGACCTTCTGAATGGTTCAAGTTCCACTTCAGAGACATTTAACAACCCGTGCTTATCACGTTCCCGGGAGTTTGAAGTCAAAGATGTCGAGCTATGGGGCTTCGTCAATGCTTCCAAGTATGATGAGATGCTCACTATCTGCCGTACTGAGAAGCAAGGGATCTGGAATCTGTGACTGTCTGTTTACAATTGATCTGAGCTGTTTAGTGCTTGTACCTGATGCCAACCCATCCTGGTGGTTTGTACAGTTTTGTAGTTCTGTCTGTTAAGTATAGTATATATAGGCCTTGTTGGAGTTCTGTCTGTATGTATAGTAAAATGCCCCTTGTAAAACAAGTTCATCAACGGAGTTATGGAGCTTAAAATGAGTAACTCTGAAACAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA755060             [                                                                              atggAAAGGAACCGTTTACGG GGGTTGGTTGAGGCGCCATTTCAACCCTTAATAAAAAAGAAGTATCAGGGGACCAGGGGCTGCTTTGTGTTCACCAAGATAGCTGGCCGTCCTGTTATATTTCGTCCGACAGGTGGTAAGAACTATTTCACGTTTTGCTCCACCGATTATTTGGCAATAGGAGGTGGGGGTCACTTTGCACTTCATCGTGAGGGAGGCCTTCTGAATGGTTCAAGTTCCACTTGAGAGACATTTAACAACCCGTGCTTATCACGTTCCCGGGAGTTTGAAGTCAAAGAAGTCGAGCTATGGGGCTTCGTCAATGCTTCCAAGTATGATGAGATGCTCACTATCGGCCGTACTGAGAAGCAAGGGATCTGGAATCTGTGACGGTCTGTTTACAAATGATGTGAGCTGTTTAGTGCTTGTACCGGATGCCAACCCATCCTGGTGGTTTGTACAGTTTTGTAGTTCTGTCTGTTAAGTATAGTATATATAGGCCTTGTGGGAGTTCTGTCTGTATGTATAGTAAAATGCCCCTTGTAAAACAAGTTCATCAAGGGAGTTATGGAGCTTAAAATGAGTAA     AAAAAAAAA                  ]


>consensus_12213#1 GGAGACATGGAATATCTTTATCACTCTGTATAGAAGGAGCATGCTTTGTGCAGGCTACTC ACTTTTGATAGTTGGGGATCGAAAAGGAGCGGTTTTCGGTGGGTTGGTTGAGGCCCCATT GCAACCATTAATAAAAAAGAAGTATCAGGGGACCAACAACTGCTTTGTGTTCACCAATAT AGCTGGCCGTCCTGTTATATATCGTCCAACAGGTGCTAATAACTATTTCACATTTTGCTC CACCGATTATTTGGCAATGGGAGGTGGTGGTCACTTTGCACTTTATCTTGATGGAGACCT TCTGAATGGTTCAAGTTCCACTTCAGAGACATTTAACAACCCGTGCTTATCACGTTCCCG GGAGTTTGAAGTCAAAGATGTCGAGCTATGGGGCTTCGTCAATGCTTCCAAGTATGATGA GATGCTCACTATCTGCCGTACTGAGAAGCAAGGGATCTGGAATCTGTGACTGTCTGTTTA CAATTGATCTGAGCTGTTTAGTGCTTGTACCTGATGCCAACCCATCCTGGTGGTTTGTAC AGTTTTGTAGTTCTGTCTGTTAAGTATAGTATATATAGGCCTTGTTGGAGTTCTGTCTGT ATGTATAGTAAAATGCCCCTTGTAAAACAAGTTCATCAACGGAGTTATGGAGCTTAAAAT GAGTAACTCTGAAACAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12213#0      GACCCTCCTGACCTCCCCGAGCCCCAACACGACGACACGGAGCACAAACCTCCCGCGCCT 60
consensus_12213#1      ------------------------------------------------------------
                                                                                   

consensus_12213#0      CACCACTTCCCCTCGCCTCCGCCGCCCCCACTTGGCCACATCTCCTCCGGTCTCGGTCCC 120
consensus_12213#1      ------------------------------------------------------------
                                                                                   

consensus_12213#0      CGCGGCGGCGGCGGCGGAGGAGCTCGCCCATGTTGTTCCGCGGACTTCTCGCTTGGGCTG 180
consensus_12213#1      ------------------------------------------------------------
                                                                                   

consensus_12213#0      TCGGGTAGGGAACCCTGAGAAAACGCATACCGGCGGTCGCGGAGAGCAGAGCAAAGGCGG 240
consensus_12213#1      ------------------------------------------------------------
                                                                                   

consensus_12213#0      GGGATGGGGTACCTGCCGTCGCTGGGCGGGAAGGCGGCGCACCTGGTGTCCGACCTCGCC 300
consensus_12213#1      ------------------------------------------------------------
                                                                                   

consensus_12213#0      ACCGTCATCCTCAACCCCGTCTCCGAGCGGGAGAGCCAGCGCCACCCCTCCCACCTCCCC 360
consensus_12213#1      ------------------------------------------------------------
                                                                                   

consensus_12213#0      GAGGCCACTGAAGTGCAAGAAAATATCTATGAGGATGACGATGATGATAATTCAGTCAAG 420
consensus_12213#1      ------------------------------------------------------------
                                                                                   

consensus_12213#0      AATTCTGAGATTCCTAATGGCCCTGACACATCTTCCTTCAGAGCATTCCTGATGTCATTT 480
consensus_12213#1      ------------------------------------------------------------
                                                                                   

consensus_12213#0      ATGTCGTCATCAAACTCCAGCAGTGATTCTATAGAAATCATACCTGAGCACAATATGAAT 540
consensus_12213#1      ------------------------------------------------------------
                                                                                   

consensus_12213#0      ATGGAATATCCAACTTTAACACCTGTTGGGAAGGGAAGCAATGGAAGGAAGGGCCTGTTT 600
consensus_12213#1      ------------------------------------------------------------
                                                                                   

consensus_12213#0      AGCAGAGGGAAGCATTCCATTGGAAAAATCATTAACAAAGCAGGCAGAATTGGTGGTTTC 660
consensus_12213#1      ------------------------------------------------------------
                                                                                   

consensus_12213#0      AGACAAAAACCCAGCTACAGCATTGATGGTGAAACTGTTCAAACAGAATATGATGCACCT 720
consensus_12213#1      ------------------------------------------------------------
                                                                                   

consensus_12213#0      GGGTTGGAACTTAAGGGATCAAAGGAATCTGCTTCACATGATAAGTTACCAGCCATGTCT 780
consensus_12213#1      ------------------------------------------------------------
                                                                                   

consensus_12213#0      GAACCATCAATGCTTTTGTCTGAAACAATGCGAACTGTTCTTTATACATCTCTTCCTGTA 840
consensus_12213#1      ------------------------------------------------------------
                                                                                   

consensus_12213#0      CTTGTCCAAGGAAGGAACTGGATGTTGGTATACAGTACCTGGAGACATGGAATATCTTTA 900
consensus_12213#1      ----------------------------------------GGAGACATGGAATATCTTTA 20
                                                               ********************

consensus_12213#0      TCTACTCTGTATAGAAGGAGCATGCTTTGTGCAGGCTACTCACTTTTGATAGTTGGGGAT 960
consensus_12213#1      TC-ACTCTGTATAGAAGGAGCATGCTTTGTGCAGGCTACTCACTTTTGATAGTTGGGGAT 79
                       ** *********************************************************

consensus_12213#0      CGAAAAGGAGCGGTTTTCGGTGGGTTGGTTGAGGCCCCATTGCAACCATTAATAAAAAAG 1020
consensus_12213#1      CGAAAAGGAGCGGTTTTCGGTGGGTTGGTTGAGGCCCCATTGCAACCATTAATAAAAAAG 139
                       ************************************************************

consensus_12213#0      AAGTATCAGGGGACCAACAACTGCTTTGTGTTCACCAATATAGCTGGCCGTCCTGTTATA 1080
consensus_12213#1      AAGTATCAGGGGACCAACAACTGCTTTGTGTTCACCAATATAGCTGGCCGTCCTGTTATA 199
                       ************************************************************

consensus_12213#0      TATCGTCCAACAGGTGCTAATAACTATTTCACATTTTGCTCCACCGATTATTTGGCAATG 1140
consensus_12213#1      TATCGTCCAACAGGTGCTAATAACTATTTCACATTTTGCTCCACCGATTATTTGGCAATG 259
                       ************************************************************

consensus_12213#0      GGAGGTGGTGGTCACTTTGCACTTTATCTTGATGGAGACCTTCTGAATGGTTCAAGTTCC 1200
consensus_12213#1      GGAGGTGGTGGTCACTTTGCACTTTATCTTGATGGAGACCTTCTGAATGGTTCAAGTTCC 319
                       ************************************************************

consensus_12213#0      ACTTCAGAGACATTTAACAACCCGTGCTTATCACGTTCCCGGGAGTTTGAAGTCAAAGAT 1260
consensus_12213#1      ACTTCAGAGACATTTAACAACCCGTGCTTATCACGTTCCCGGGAGTTTGAAGTCAAAGAT 379
                       ************************************************************

consensus_12213#0      GTCGAGCTATGGGGCTTCGTCAATGCTTCCAAGTATGATGAGATGCTCACTATCTGCCGT 1320
consensus_12213#1      GTCGAGCTATGGGGCTTCGTCAATGCTTCCAAGTATGATGAGATGCTCACTATCTGCCGT 439
                       ************************************************************

consensus_12213#0      ACTGAGAAGCAAGGGATCTGGAATCTGTGACTGTCTGTTTACAATTGATCTGAGCTGTTT 1380
consensus_12213#1      ACTGAGAAGCAAGGGATCTGGAATCTGTGACTGTCTGTTTACAATTGATCTGAGCTGTTT 499
                       ************************************************************

consensus_12213#0      AGTGCTTGTACCTGATGCCAACCCATCCTGGTGGTTTGTACAGTTTTGTAGTTCTGTCTG 1440
consensus_12213#1      AGTGCTTGTACCTGATGCCAACCCATCCTGGTGGTTTGTACAGTTTTGTAGTTCTGTCTG 559
                       ************************************************************

consensus_12213#0      TTAAGTATAGTATATATAGGCCTTGTTGGAGTTCTGTCTGTATGTATAGTAAAATGCCCC 1500
consensus_12213#1      TTAAGTATAGTATATATAGGCCTTGTTGGAGTTCTGTCTGTATGTATAGTAAAATGCCCC 619
                       ************************************************************

consensus_12213#0      TTGTAAAACAAGTTCATCAACGGAGTTATGGAGCTTAAAATGAGTAACTCTGAAACATGA 1560
consensus_12213#1      TTGTAAAACAAGTTCATCAACGGAGTTATGGAGCTTAAAATGAGTAACTCTGAAACAAAA 679
                       *********************************************************  *

consensus_12213#0      ATCGAGCAACTGCCAAAGCTGATCCTTGTAAATATTGTACCGTACCATAGCTTCCTGAAG 1620
consensus_12213#1      AAAAAAAAAAAAAAAAAAA----------------------------------------- 698
                       *   *  **     ***                                           

consensus_12213#0      AAAATGCAGTGGAATTCAGGCAAAAAAAAAAA 1652
consensus_12213#1      --------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)