cluster # 12218

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Oryza sativa
cluster # 12218 cluster # 12218 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12218#0 length = 2192 sequences # 9

consensus_12218#1 length = 788 sequences # 1

consensusID : consensus_12218#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2192
fasta sequence

                              [ACTGCACTTCCCTTTTCAGCTCTTCTCCAACCTCAATTTCACCCCATTTTTCCATATCCTCTCTGCACACGTACGTACAGGTAAACGTGCCTGATCATGGACATGGACTCGTCGCCGTCGACACAGGACTGTGGCGGCTGGCTGCTGTACGTCTCCCTCGCTGCCAAATGCGGCGGCGACCCTTGCCGCGTCGTCGGCTTCGTCGCCGTTGCCGTCGTCGCCTTCGCCGTCACGTCGCTCCTGCACTGGCTGTCGCCCGGTGGCCCGGCGTGGGGGAGGTATTGGTGGAACAGGAGGGGTGGTCTGGGCATTGCTGCCGCCATTCCTGGGCCCCGTGGGTTGCCCGTGCTCGGCAGCATGTCGCTCATGGCGGGACTCGCGCACCGGAAGCTCGCCGCGGCGGCGGGGGGCTCGCCGGCGAGGCGGCGCCTCATGGCGCTGTCTCTCGGGGAGACACGG-GTGGTGGTCACCGCCGACCCCGGCGTCGCGCGGGAGCTCCTCGCCAGCGCGGCGTTCGCCGACCGGCCGGTGAAGGAGTCCGCGTACGGGATGCTGTTCCACCGCGCCATCGGGTTCGCGCCCTACGGCACGTACTGGCGCGCGCTCCGCCGCGTCGCGTCCACGCACCTCTTCTCGCCGAGGCAGGTGTCCGCCTCCGCCGCGCAGCGCGCGGTGATCGCGCGCCAGATGGTGGAGGCCATGAGGTCCGCCGCCGCCGCCGCCGCCGGTGGCGGCGTGGCGGCGAGGCCGTTCCTGAAGCGCGCGTCGCTGCACAACGTGATGTGGTCGGTGTTCGGGAGGAAGTACGAGCTGGCGGCGCCGGAGAGCGAGGAGACGGCGGAGCTGAGGAGCATGGTGGACGAAGGCTACGACCTCCTCGGCCAGCTCAACTGGTCCGACCACCTCCCATGGCTCGCACCCTTTGACCTCAAGAAGACGCGGTCAAGGTGCTCGTCCCTTGTCCCCCGCGTCAACCGCTTCGTCACCCGCATCATCGACGAGCACCGTGCTCGCCTCAGCCTCGCCGTCGACGCCGCCGTCGACTTCACCGACGTCCTTCTCTCCCTCCACGGCGGCGACAAGCTCTCCGACGCCGACATGGTCGCCGTCCTCTGGGAGATGATCTTTCGAGGGACGGACACGGTGGCGGTCCTGATCGAGTGGGTGGCGGCGAGGCTGGTGCTGCACCAGGACGTGCAGGCCAGGGTCCATGACGAGCTGGACCGAGTGGTCGGGTCGGACCGGGCAGTGACCGAGTCGGACGCGTCCAAGCTGGTCTACCTCCAAGCGGTGATCAAAGAGGTCCTGCGCCTCCACCCGCCGGGCCCACTGCTCTCGTGGGCACGCCTCGCCACGTCGGATGTACACGTCGGCGGGTTCCTCATACCCTCTGGGACCACCGCCATGGTGAACATGTGGGCCATAACCCATGACCCTGCCGTTTGGCCCGACCCGAACGAGTTCAAACCAGAGAGGTTCGTCGCAGGGCCCTCGTCGGACCAGGCCACGGAGTTTCCGATAATGGGGTC-GGATCTCAGGCTCGCGCCGTTCGGGTCAGGAAGGCGAAGCTGCCCCGGCAAGTCGCTCGCCATCGCCACTGTCGGATTCTGGGTTGCCACGTTGCTACACGAGTTCGATTGGCTTCCCTTGTCAGATAAGTCGCGCGGCGTCGATCTGTCGGAGGTGCTGAAGCTGTCGTGCGAGATGGCAACCCCGCTGGAGGCAAGGCTAAGGCCGCGACGCAAGGTGTGATGACGTGTCACCACCGTCACGTGGGACTAAGACGAGGAGAGGGAAGCCGACTTCCACTTCCTTCTAGTGCTTGTTGAGATGTGTAAATGTCCCTAAATGTAAAGTGTTACGCTTTGAGTAGAAATGCCCCTACGTTGTAGTGCGTAGTATTGTACACTTGTAGTATGTAATGCTTGTATTTTTGTGTGTTTTGCACGTCCTAAGTAGTGGAGTAGTAGCTGATAATAGTTAGTTAATTACTCTGCTATTTAGTCATAGTTAACTACCTACCTGCAGGTGATGAGAGTGACAG--TTTTTTTTTGTTTAATTAACTGCAGGTGATGAGTGTAGAATAGCTCGGTATGCCCATCTCTATCCTAAGTGCACGCGTGCGTGTGTAATTGTTGTCAGATGTATGTTGTTTTCAATGATAATGTACATAATTGGGCCGAAAAAAAAAA]

[+] EMBL AK072163             [ACTGCACTTCCCTTTTCAGCTCTTCTCCAACCTCAATTTCACCCCATTTTTCCATATCCTCTCTGCACACGTACGTACAGGTAAACGTGCCTGATCATGGACATGGACTCGTCGCCGTCGACACAGGACTGTGGCGGCTGGCTGCTGTACGTCTCCCTCGCTGCCAAATGCGGCGGCGACCCTTGCCGCGTCGTCGGCTTCGTCGCCGTTGCCGTCGTCGCCTTCGCCGTCACGTCGCTCCTGCACTGGCTGTCGCCCGGTGGCCCGGCGTGGGGGAGGTATTGGTGGAACAGGAGGGGTGGTCTGGGCATTGCTGCCGCCATTCCTGGGCCCCGTGGGTTGCCCGTGCTCGGCAGCATGTCGCTCATGGCGGGACTCGCGCACCGGAAGCTCGCCGCGGCGGCGGGGGGCTCGCCGGCGAGGCGGCGCCTCATGGCGCTGTCTCTCGGGGAGACACGG GTGGTGGTCACCGCCGACCCCGGCGTCGCGCGGGAGCTCCTCGCCAGCGCGGCGTTCGCCGACCGGCCGGTGAAGGAGTCCGCGTACGGGATGCTGTTCCACCGCGCCATCGGGTTCGCGCCCTACGGCACGTACTGGCGCGCGCTCCGCCGCGTCGCGTCCACGCACCTCTTCTCGCCGAGGCAGGTGTCCGCCTCCGCCGCGCAGCGCGCGGTGATCGCGCGCCAGATGGTGGAGGCCATGAGGTCCGCCGCCGCCGCCGCCGCCGGTGGCGGCGTGGCGGCGAGGCCGTTCCTGAAGCGCGCGTCGCTGCACAACGTGATGTGGTCGGTGTTCGGGAGGAAGTACGAGCTGGCGGCGCCGGAGAGCGAGGAGACGGCGGAGCTGAGGAGCATGGTGGACGAAGGCTACGACCTCCTCGGCCAGCTCAACTGGTCCGACCACCTCCCATGGCTCGCACCCTTTGACCTCAAGAAGACGCGGTCAAGGTGCTCGTCCCTTGTCCCCCGCGTCAACCGCTTCGTCACCCGCATCATCGACGAGCACCGTGCTCGCCTCAGCCTCGCCGTCGACGCCGCCGTCGACTTCACCGACGTCCTTCTCTCCCTCCACGGCGGCGACAAGCTCTCCGACGCCGACATGGTCGCCGTCCTCTGGGAGATGATCTTTCGAGGGACGGACACGGTGGCGGTCCTGATCGAGTGGGTGGCGGCGAGGCTGGTGCTGCACCAGGACGTGCAGGCCAGGGTCCATGACGAGCTGGACCGAGTGGTCGGGTCGGACCGGGCAGTGACCGAGTCGGACGCGTCCAAGCTGGTCTACCTCCAAGCGGTGATCAAAGAGGTCCTGCGCCTCCACCCGCCGGGCCCACTGCTCTCGTGGGCACGCCTCGCCACGTCGGATGTACACGTCGGCGGGTTCCTCATACCCTCTGGGACCACCGCCATGGTGAACATGTGGGCCATAACCCATGACCCTGCCGTTTGGCCCGACCCGAACGAGTTCAAACCAGAGAGGTTCGTCGCAGGGCCCTCGTCGGACCAGGCCACGGAGTTTCCGATAATGGGATC GGATCTCAGGCTCGCGCCGTTCGGGTCAGGAAGGCGAAGCTGCCCCGGCAAGTCGCTCGCCATCGCCACTGTCGGATTCTGGGTTGCCACGTTGCTACACGAGTTCGATTGGCTTCCCTTGTCAGATAAGTCGCGCGGCGTCGATCTGTCGGAGGTGCTGAAGCTGTCGTGCGAGATGGCAACCCCGCTGGAGGCAAGGCTAAGGCCGCGACGCAAGGTGTGATGACGTGTCACCACCGTCACGTGGGACTAAGACGAGGAGAGGGAAGCCGACTTCCACTTCCTTCTAGTGCTTGTTGAGATGTGTAAATGTCCCTAAATGTAAAGTGTTACGCTTTGAGTAGAAATGCCCCTACGTTGTAGTGCGTAGTATTGTACACTTGTAGTATGTAATGCTTGTATTTTTGTGTGTTTTGCACGTCCTAAGTAGTGGAGTAGTAGCTGATAATAGTTAGTTAATTACTCTGCTATTTAGTCATAGTTAACTACCTACCTGCAGGTGATGAGAGTGACAG  TTTTTTTTTGTTTAATTAACTGCAGGTGATGAGTGTAGA                                                                                                             ]
[+] EMBL CB657899             [                  GCTCTTCTCCAACCTCAATTTCACCCCATTTTTCCATATCCTCTCTGCACACGTACGTACAGGTAAACGTGCCTGATCATGGACATGGACTCGTCGCCGTCGACACAGGACTGTGGCGGCTGGCTGCTGTACGTCTCCCTCGCTGCCAAATGCGGCGGCGACCCTTGCCGCGTCGTCGGCTTCGTCGCCGTTGCCGTCGTCGCCTTCGCCGTCACGTCGCTCCTGCACTGGCTGTCGCCCGGTGGCCCGGCGTGGGGGAGGTATTGGTGGAACAGGAGGGGTGGTCTGGGCATTGCTGCCGCCATTCCTGGGCCCCGTGGGTTGCCCGTGCTCGGCAGCATGTCGCTCATGGCGGGACTCGCGCACCGGAAGCTCGCCGCGGCGGCGGGGGGCTCGCCGGCGAGGCGGCGCCTCATGGCGCTGTCTCTCGGGGAGACACGG GTGGTGGTCACCGCCGACCCCGGCGTCGCGCGGGAGCTCCTCGCCAGCGCGGCGTTCGCCGACCGGCCGGTGAAGGAGTCCGCGTACGGGATGCTGTTCCACCGCGCCATCGGGTTCGCGCCCTACGGCACGTACTGGCGCGCGCTCCGCCGCGTCGCGTCCACGCACCTCTTCTCGCCGAGGCAGGTGTCCGCCTCCGCCGCGCAGCGCGCGGTGATCGCGCGCCAGATGGTGGAGGCCATGAAGTCCGCCGCCGCCGCCGCCGCCGGTGGCGGCGTGGCGGCAAGGCCGTTCCTGAAGCGCGCGTCGCTGCACAACGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB673949             [                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGGGGAGACACGGAGTGGTGGTCACCGCCGACCCCGGCGTCGCGCGGGAGCTCCTCGCCAGCGCGGCGTTCGCCGACCGGCCGGTGAAGGAGTCCGCGTACGGGATGCTGTTCCACCGCGCCATCGGGTTCGCGCCCTACGGGACGTACTGGCGCGCGCTCCGCCGCGTCGCGTCCACGCACCTCTTCTCGCCGAGGCAGGTGTCCGCCTCCGCCGCGCAGCGCGCGGTGATCGCGCGCCAGATGGTGGAGGCCATGAGGTCCGCCGCCGCCGCCGCCGCCGGTGGCGGCGTGGCGGTTAGGCCGTTCCTGAAGCGCGCGTCGCTGCACAACGTGATGTGGTCGGTGTTCTGGAGGAAGTACGATCTGGCGGCGCCGGAGAGCGAGGATACGGCTGAGCTGAGGAGCATGGTGGACGAAGGCTACCACCTCCTCTGTCAGCTCATCTGGTCCGACCACCTCCCATGGCTCGCACCCTTTGACCTCAAGAAGACGCGGTCAAGGTGCTCGTCCCTTGTCCCCCGCGTCGACCGCTTCGTCACCCGCATCATCGACGAGCACCGTGCTCGCCTCAGCCTCACCGTCGACGCCGCCGTCGACTTCACCGACGTCCTTCTCTCCCTCCACGGCGGCGACAAGCTCTCCGACGCCGACATGGTCGCCGTCCTCTGGGAGATGATCTTTCGAGGGACGGACACGGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB655569             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCTGGCGGCGCCGGAGAGCGAGGAGACGGCGGAGCTGAGGAGCATGGTGGACGAAGGCTACGACCTCCTCGGCCAGCTCAACTGGTCCGACCACCTCCCATGGCTCGCACCCTTTGACCTCAAGAAGACGCGGTCAAGGTGCTCGTCCCTTGTCCCCCGCGTCAACCGCTTCGTCACCCGCATCATCGACGAGCACCGTGCTCGCCTCAGCCTCGCCGTCGACGCCGCCGTCGACTTCACCGACGTCCTTCTCTCCCTCCACGGCGGCGACAAGCTCTCCGACGCCGACATGGTCGCCGTCCTCTGGGAGATGATCTTTCGAGGGACGGACACGGTGGCGGTCCTGATCGAGTGGGTGGCGGCGAGGCTGGTGCTGCACCAGGACGTGCAGGCCAGGGTCCATGACGAGCTGGACCGAGTGGTCGGGTCGGACCGGGCAGTGACCGAGTCGGACGCGTCCAAGCTGGTCTACCTCCAAGCGGTGATCAAAGAGGTCCTGCGCCTCCACCCGCCGGGCCCACTGCTCTCGTGGGCACGCCTCGCCACGTCGGATGTACACGTCGGCGGGTTCCTCATACCCTCTGGGACCACCGCCATGGTGAACATGTGGGCCATAACCCATGACCCTGCCGTTTGGCCCGACCCGAACGAGTTCAAACCAGAGAGGTTCGTCGCAGGGCCCTCGTCGGACCAGGCCACGGAGTTTCCGATAATGGGGTCGGGATCTCAGGCTCGCGCCGTTCGGGTCAGGAAGGCGAAGCTGCCCCGGCAAGTCGCTCGCCATCGCCACTGTCGGATTCTGGGGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB628186             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCTCCCATGGCTCGCACCCTTTGACCTCCAGAAGACGCGGTCAAGGTGCTCGTCCCTTGTCCCCCGCGTCAACCGCTTCGTCACCCGCATCATCGACGAGCACCGTGCTCGCCTCAGCCTCGCCGTCGACGCCGCCGTAGACTTCACCGACGTCCTTCTCTCCCTCCACGGCGGCGACAAGCTCTCCGACGCCGACATGGTCGCCGTCCTCTGGGAGATGATCTTTCGAGGGACGGACACGGTGGCGGTCCTGATCGAGTGGGTGGCGGCGAGGCTGGTGCTGCACCAGGACGTGCAGGCCAGGGTCCATGACGAGCTGGACCGAGTGGTCGGGTCGGACCGGGCAGTGACCGAGTCGGACGCGTCCAAGCTGGTCTACCTCCAAGCGGTGATCAAAGAGGTCCTGCGCCTCCACCCGCCGGGCCCACTGCTCTCGTGGGCACGCCTCGCCACGTCGGATGTACACGTCGGCGGGTTCCTCATACCCTCCGGGACCACCGCCATGGTGAACATGTGGGCCATAACCCATGACCCTGCCGTTTGGCCCGACCCGAACGAGTTCAAGCCAGAGAGGTTCGTCGCAGGGCCCTCGTCGGACCAGGCCGCGGAGTTTCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB673950             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGGGTCGGACCGGGCAGTGACCGAGTCGGACGCGTCCAAGCTGGTCTACCTCCAAGCGGTGATCAAAGAGGTCCTGCGCCTCCACCCGCCGGGCCCACTGCTCTCGTGGGCACGCCTCGCCACGTCGGATGTACACGTCGGCGGGTTCCTCATACCCTCTGGGACCACCGCCATGGTGAACATGTGGGCCATAACCCATGACCCTGCCGTTTGGCCCGACCCGAACGAGTTCAAACCAGAGAGGTTCGTCGCAGGGCCCTCGTCGGACCAGGCCACGGAGTTTCCGATAATGGGGTC GGATCTCAGGCTCGCGCCGTTCGGGTCAGGAAGGCGAAGCTGCCCCGGCAAGTCGCTCGCCATCGCCACTGTCGGATTCTGGGTTGCCACGTTGCTACACGAGTTCGATTGGCTTCCCTTGTCAGATAAGTCGCGCGGCGTCGATCTGTCGGAGGTGCTGAAGCTGTCGTGCGAGATGGCAACCCCGCTGGAGGCAAGGCTAAGGCCGCGACGCAAGGTGTGATGACGTGTCACCACCGTCACGTGGGACTAAGACGAGGAGAGGGAAGCCGACTTCCACTTCCTTCTAGTGCTTGTTGAGATGTGTAAATGTCCCTAAATGTAAAGTGTTACGCTTTGAGTAGAAATGCC                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB628187             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TACACGTCGGCGGGTTCCTCATACCCTCCGGGACCACCGCCATGGTGAACATGTGGGCCATAACCCATGACCCTGCCGTTTGGCCCGACCCGAACGAGTTCAAGCCAGAGAGGTTCGTCGCAGGGCCCTCGTCGGACCAGGCCGCGGAGTTTCCGATAATGGGGTC GGATCTCAGGCTCGCGCCGTTCGGGTCAGGAAGGCGAAGCTGCCCCGGCAAGTCGCTCGCCATCGCCACCGTTGGATTCTGGGTTGCCACGTTGCTACACGAGTTCGATTGGCTTCCCTTGTCAGATAAGTCGCGCGGCGTCGATCTGTCGGAGGTGCTGAAGCTGTCGTGCGAGATGGCAACCCCGCTGGAGGCGAGGCTAAGGCCGCGACGCAAGGTGTGATGACGTGTCACCACTGCCACGTGAGACTAAGACGAGGAGAGGGAAGCCGACTTCCACTTCCTTCTAGTGCTTGTTGAGATGTGTAAATGTCCCTAAATGTAAAGTGTTACGCTTTGAGTAGAAATGCCCCTACGTTGTAGTGCGTAGTATTGTACACTTGTAGTATGTAATGCTTGTATTTTTGTGTGTTTTGCACGTCCTAAGTAGTGGAGTAGTAGCTGATAATAGTTAGTTAATTACTCTGCTATTTAGTCATAGTTAACTACCTACCTGCAGGTGATGAGAGTGACAGTTTTTTTTTTTGTTTAATTAACTGCAGGTGATGAGTGTATAATAGCTCGGTATGCCCATCTCTATCCTAAGTGCACGCGTGCGTGTGTAATTGTTGTCAGATGTATGTTGTTTTCAATGATAATGTACATAATTGGGC            ]
[-] EMBL CB655570             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCGGCGGGTTCCTCATACCCTCTGGGACCACCGCCATGGTGAACATGTGGGCCATAACCCATGACCCTGCCGTTTGGCCCGACCCGAACGAGTTCAAACCAGAGAGGTTCGTCGCAGGGCCCTCGTCGGACCAGGCCACGGAGTTTCCGATAATGGGGTC GGATCTCAGGCTCGCGCCGTTCGGGTCAGGAAGGCGAAGCTGCCCCGGCAAGTCGCTCGCCATCGCCACTGTCGGATTCTGGGTTGCCACGTTGCTACACGAGTTCGATTGGCTTCCCTTGTCAGATAAGTCGCGCGGCGTCGATCTGTCGGAGGTGCTGAAGCTGTCGTGCGAGATGGCAACCCCGCTGGAGGCAAGGCTAAGGCCGCGACGCAAGGTGTGATGACGTGTCACCACCGTCACGTGGGACTAAGACGAGGAGAGGGAAGCCGACTTCCACTTCCTTCTAGTGCTTGTTGAGATGTGTAAATGTCCCTAAATGTAAAGTGTTACGCTTTGAGTAGAAATGCCCCTACGTTGTAGTGCGTAGTATTGTACACTTGTAGTATGTAATGCTTGTATTTTTGTGTGTTTTGCACGTCCTAAGTAGTGGAGTAGTAGCTGATAATAGTTAGTTAATTACTCTGCTATTTAGTCATAGTTAACTACCTACCTGCAGGTGATGAGAGTGACAG  TTTTTTTTTGTTTAATTAACTGCAGGTGATGAGTGTAGAATAGCTCGGTATG                                                                                                ]
[+] EMBL BI812325             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGGCTAA GCCGCGACGCAAGGTGTGATGACGTGTCACCACCGCCACGTGGGACTAAGACGAGGAGAGGGAA CCGACTTCCACTTCCTTCTAGGGCTTGTTGAGATGTGTAAATGTCCCTAAATGTAAAGTGTTACGCTTTGAGTAGAAATGCCCCTACGTTGTAGTGCGTAGTATTGTACACTTGTAGCATGTAATGCTTGTATTTTTGTGTGTTTTGCACGTCCTAAGTAGTGGAGTAGTAGCTGATAATAGTTAGTTAATTACTCTGCTATTTAGTCATAGTTAACTACCTACCTGCCGGTGATGAGAGTGACAGT TTTTTTTTTGTTTAATTAACTGCCGGTGATGAGTGTATAATAGCTCGGTATGCCCATCTCTATCCTAAGTGCACGCGTGCGTGTGTAATTATTGTCAGATGTATGTTGTTTTCAATGATAATGTACATATTTTTGGCGAAAAAAAAAA]




>consensus_12218#0
ACTGCACTTCCCTTTTCAGCTCTTCTCCAACCTCAATTTCACCCCATTTTTCCATATCCT
CTCTGCACACGTACGTACAGGTAAACGTGCCTGATCATGGACATGGACTCGTCGCCGTCG
ACACAGGACTGTGGCGGCTGGCTGCTGTACGTCTCCCTCGCTGCCAAATGCGGCGGCGAC
CCTTGCCGCGTCGTCGGCTTCGTCGCCGTTGCCGTCGTCGCCTTCGCCGTCACGTCGCTC
CTGCACTGGCTGTCGCCCGGTGGCCCGGCGTGGGGGAGGTATTGGTGGAACAGGAGGGGT
GGTCTGGGCATTGCTGCCGCCATTCCTGGGCCCCGTGGGTTGCCCGTGCTCGGCAGCATG
TCGCTCATGGCGGGACTCGCGCACCGGAAGCTCGCCGCGGCGGCGGGGGGCTCGCCGGCG
AGGCGGCGCCTCATGGCGCTGTCTCTCGGGGAGACACGGGTGGTGGTCACCGCCGACCCC
GGCGTCGCGCGGGAGCTCCTCGCCAGCGCGGCGTTCGCCGACCGGCCGGTGAAGGAGTCC
GCGTACGGGATGCTGTTCCACCGCGCCATCGGGTTCGCGCCCTACGGCACGTACTGGCGC
GCGCTCCGCCGCGTCGCGTCCACGCACCTCTTCTCGCCGAGGCAGGTGTCCGCCTCCGCC
GCGCAGCGCGCGGTGATCGCGCGCCAGATGGTGGAGGCCATGAGGTCCGCCGCCGCCGCC
GCCGCCGGTGGCGGCGTGGCGGCGAGGCCGTTCCTGAAGCGCGCGTCGCTGCACAACGTG
ATGTGGTCGGTGTTCGGGAGGAAGTACGAGCTGGCGGCGCCGGAGAGCGAGGAGACGGCG
GAGCTGAGGAGCATGGTGGACGAAGGCTACGACCTCCTCGGCCAGCTCAACTGGTCCGAC
CACCTCCCATGGCTCGCACCCTTTGACCTCAAGAAGACGCGGTCAAGGTGCTCGTCCCTT
GTCCCCCGCGTCAACCGCTTCGTCACCCGCATCATCGACGAGCACCGTGCTCGCCTCAGC
CTCGCCGTCGACGCCGCCGTCGACTTCACCGACGTCCTTCTCTCCCTCCACGGCGGCGAC
AAGCTCTCCGACGCCGACATGGTCGCCGTCCTCTGGGAGATGATCTTTCGAGGGACGGAC
ACGGTGGCGGTCCTGATCGAGTGGGTGGCGGCGAGGCTGGTGCTGCACCAGGACGTGCAG
GCCAGGGTCCATGACGAGCTGGACCGAGTGGTCGGGTCGGACCGGGCAGTGACCGAGTCG
GACGCGTCCAAGCTGGTCTACCTCCAAGCGGTGATCAAAGAGGTCCTGCGCCTCCACCCG
CCGGGCCCACTGCTCTCGTGGGCACGCCTCGCCACGTCGGATGTACACGTCGGCGGGTTC
CTCATACCCTCTGGGACCACCGCCATGGTGAACATGTGGGCCATAACCCATGACCCTGCC
GTTTGGCCCGACCCGAACGAGTTCAAACCAGAGAGGTTCGTCGCAGGGCCCTCGTCGGAC
CAGGCCACGGAGTTTCCGATAATGGGGTCGGATCTCAGGCTCGCGCCGTTCGGGTCAGGA
AGGCGAAGCTGCCCCGGCAAGTCGCTCGCCATCGCCACTGTCGGATTCTGGGTTGCCACG
TTGCTACACGAGTTCGATTGGCTTCCCTTGTCAGATAAGTCGCGCGGCGTCGATCTGTCG
GAGGTGCTGAAGCTGTCGTGCGAGATGGCAACCCCGCTGGAGGCAAGGCTAAGGCCGCGA
CGCAAGGTGTGATGACGTGTCACCACCGTCACGTGGGACTAAGACGAGGAGAGGGAAGCC
GACTTCCACTTCCTTCTAGTGCTTGTTGAGATGTGTAAATGTCCCTAAATGTAAAGTGTT
ACGCTTTGAGTAGAAATGCCCCTACGTTGTAGTGCGTAGTATTGTACACTTGTAGTATGT
AATGCTTGTATTTTTGTGTGTTTTGCACGTCCTAAGTAGTGGAGTAGTAGCTGATAATAG
TTAGTTAATTACTCTGCTATTTAGTCATAGTTAACTACCTACCTGCAGGTGATGAGAGTG
ACAGTTTTTTTTTGTTTAATTAACTGCAGGTGATGAGTGTAGAATAGCTCGGTATGCCCA
TCTCTATCCTAAGTGCACGCGTGCGTGTGTAATTGTTGTCAGATGTATGTTGTTTTCAAT
GATAATGTACATAATTGGGCCGAAAAAAAAAA

consensusID : consensus_12218#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 788
fasta sequence

                              [CGAGGCTGGTGCTGCACCAGGACGTGCAGGCCAGGGTCCATGACGAGCTGGACCGAGTGGTCGGGTCGGACCGGGCAGTGACCGAGTCGGACGCGTCCAAGCTGGTCTACCTCCAAGCGGTGATCAAAGAGGTCNTGCGCCTCCACCCGCCGGGCCCACTGCTCTCGTGGGCACGCCTCGCCACGTCGGATGTACACGTCGGCGGGTTCCTCATACCCTCTGGGACCACCGCCATGGTGAACATGTGGGCCATAACCCATGACCCTGCCGTTTGGCCCGACCCGAACGAGTTCAAACCAGAGAGGTTCGTCGCAGGGCCCTCGTCGGACCAGGCCACGGAGTTTCCGATAATGGGGTCGGATCTCAGGCTCGCGCCGTTCGGGTCAGGAAGGCGAAGCTGCCCCGGCAAGTCGCTCGCCATCGCCACTGTCGGATTCTGGGTTGCCACGTTGCTACACGAGTTCGATTGGCTTCCCTTGTCAGATAAGTCGCGCGGCGTCGATCTGTCGGAGGTGCTGAAGCTGTCGTGCGAGATGGCAACCCCGCTGGAGGCAAGGCTAAGGCCGCGACGCAAGGTGTGATGACGTGTCACCACCGTCACGTGGGACTAAGACGAGGAGAGGGAAGCCGACTTCCACTTCCTTTTAGTGCTTGTTGAGATGTGTAAATGTCCCTAAATGTAAAGTGTTACGCTTTGAGTAGAAATGCCCCTACGTTGTAGTGCGTAGTATTGTACACTTGTAGTATGTAATGCTTGTATTTTTGTGTGTTTTGCAAAAAAAAAAAGA]

[-] EMBL CB657900             [CGAGGCTGGTGCTGCACCAGGACGTGCAGGCCAGGGTCCATGACGAGCTGGACCGAGTGGTCGGGTCGGACCGGGCAGTGACCGAGTCGGACGCGTCCAAGCTGGTCTACCTCCAAGCGGTGATCAAAGAGGTCNTGCGCCTCCACCCGCCGGGCCCACTGCTCTCGTGGGCACGCCTCGCCACGTCGGATGTACACGTCGGCGGGTTCCTCATACCCTCTGGGACCACCGCCATGGTGAACATGTGGGCCATAACCCATGACCCTGCCGTTTGGCCCGACCCGAACGAGTTCAAACCAGAGAGGTTCGTCGCAGGGCCCTCGTCGGACCAGGCCACGGAGTTTCCGATAATGGGGTCGGATCTCAGGCTCGCGCCGTTCGGGTCAGGAAGGCGAAGCTGCCCCGGCAAGTCGCTCGCCATCGCCACTGTCGGATTCTGGGTTGCCACGTTGCTACACGAGTTCGATTGGCTTCCCTTGTCAGATAAGTCGCGCGGCGTCGATCTGTCGGAGGTGCTGAAGCTGTCGTGCGAGATGGCAACCCCGCTGGAGGCAAGGCTAAGGCCGCGACGCAAGGTGTGATGACGTGTCACCACCGTCACGTGGGACTAAGACGAGGAGAGGGAAGCCGACTTCCACTTCCTTTTAGTGCTTGTTGAGATGTGTAAATGTCCCTAAATGTAAAGTGTTACGCTTTGAGTAGAAATGCCCCTACGTTGTAGTGCGTAGTATTGTACACTTGTAGTATGTAATGCTTGTATTTTTGTGTGTTTTGCAAAAAAAAAAAGA]




>consensus_12218#1
CGAGGCTGGTGCTGCACCAGGACGTGCAGGCCAGGGTCCATGACGAGCTGGACCGAGTGG
TCGGGTCGGACCGGGCAGTGACCGAGTCGGACGCGTCCAAGCTGGTCTACCTCCAAGCGG
TGATCAAAGAGGTCNTGCGCCTCCACCCGCCGGGCCCACTGCTCTCGTGGGCACGCCTCG
CCACGTCGGATGTACACGTCGGCGGGTTCCTCATACCCTCTGGGACCACCGCCATGGTGA
ACATGTGGGCCATAACCCATGACCCTGCCGTTTGGCCCGACCCGAACGAGTTCAAACCAG
AGAGGTTCGTCGCAGGGCCCTCGTCGGACCAGGCCACGGAGTTTCCGATAATGGGGTCGG
ATCTCAGGCTCGCGCCGTTCGGGTCAGGAAGGCGAAGCTGCCCCGGCAAGTCGCTCGCCA
TCGCCACTGTCGGATTCTGGGTTGCCACGTTGCTACACGAGTTCGATTGGCTTCCCTTGT
CAGATAAGTCGCGCGGCGTCGATCTGTCGGAGGTGCTGAAGCTGTCGTGCGAGATGGCAA
CCCCGCTGGAGGCAAGGCTAAGGCCGCGACGCAAGGTGTGATGACGTGTCACCACCGTCA
CGTGGGACTAAGACGAGGAGAGGGAAGCCGACTTCCACTTCCTTTTAGTGCTTGTTGAGA
TGTGTAAATGTCCCTAAATGTAAAGTGTTACGCTTTGAGTAGAAATGCCCCTACGTTGTA
GTGCGTAGTATTGTACACTTGTAGTATGTAATGCTTGTATTTTTGTGTGTTTTGCAAAAA
AAAAAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12218#0      ACTGCACTTCCCTTTTCAGCTCTTCTCCAACCTCAATTTCACCCCATTTTTCCATATCCT 60
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      CTCTGCACACGTACGTACAGGTAAACGTGCCTGATCATGGACATGGACTCGTCGCCGTCG 120
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      ACACAGGACTGTGGCGGCTGGCTGCTGTACGTCTCCCTCGCTGCCAAATGCGGCGGCGAC 180
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      CCTTGCCGCGTCGTCGGCTTCGTCGCCGTTGCCGTCGTCGCCTTCGCCGTCACGTCGCTC 240
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      CTGCACTGGCTGTCGCCCGGTGGCCCGGCGTGGGGGAGGTATTGGTGGAACAGGAGGGGT 300
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      GGTCTGGGCATTGCTGCCGCCATTCCTGGGCCCCGTGGGTTGCCCGTGCTCGGCAGCATG 360
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      TCGCTCATGGCGGGACTCGCGCACCGGAAGCTCGCCGCGGCGGCGGGGGGCTCGCCGGCG 420
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      AGGCGGCGCCTCATGGCGCTGTCTCTCGGGGAGACACGGGTGGTGGTCACCGCCGACCCC 480
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      GGCGTCGCGCGGGAGCTCCTCGCCAGCGCGGCGTTCGCCGACCGGCCGGTGAAGGAGTCC 540
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      GCGTACGGGATGCTGTTCCACCGCGCCATCGGGTTCGCGCCCTACGGCACGTACTGGCGC 600
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      GCGCTCCGCCGCGTCGCGTCCACGCACCTCTTCTCGCCGAGGCAGGTGTCCGCCTCCGCC 660
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      GCGCAGCGCGCGGTGATCGCGCGCCAGATGGTGGAGGCCATGAGGTCCGCCGCCGCCGCC 720
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      GCCGCCGGTGGCGGCGTGGCGGCGAGGCCGTTCCTGAAGCGCGCGTCGCTGCACAACGTG 780
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      ATGTGGTCGGTGTTCGGGAGGAAGTACGAGCTGGCGGCGCCGGAGAGCGAGGAGACGGCG 840
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      GAGCTGAGGAGCATGGTGGACGAAGGCTACGACCTCCTCGGCCAGCTCAACTGGTCCGAC 900
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      CACCTCCCATGGCTCGCACCCTTTGACCTCAAGAAGACGCGGTCAAGGTGCTCGTCCCTT 960
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      GTCCCCCGCGTCAACCGCTTCGTCACCCGCATCATCGACGAGCACCGTGCTCGCCTCAGC 1020
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      CTCGCCGTCGACGCCGCCGTCGACTTCACCGACGTCCTTCTCTCCCTCCACGGCGGCGAC 1080
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      AAGCTCTCCGACGCCGACATGGTCGCCGTCCTCTGGGAGATGATCTTTCGAGGGACGGAC 1140
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      ACGGTGGCGGTCCTGATCGAGTGGGTGGCGGCGAGGCTGGTGCTGCACCAGGACGTGCAG 1200
consensus_12218#1      -------------------------------CGAGGCTGGTGCTGCACCAGGACGTGCAG 29
                                                      *****************************

consensus_12218#0      GCCAGGGTCCATGACGAGCTGGACCGAGTGGTCGGGTCGGACCGGGCAGTGACCGAGTCG 1260
consensus_12218#1      GCCAGGGTCCATGACGAGCTGGACCGAGTGGTCGGGTCGGACCGGGCAGTGACCGAGTCG 89
                       ************************************************************

consensus_12218#0      GACGCGTCCAAGCTGGTCTACCTCCAAGCGGTGATCAAAGAGGTCCTGCGCCTCCACCCG 1320
consensus_12218#1      GACGCGTCCAAGCTGGTCTACCTCCAAGCGGTGATCAAAGAGGTCNTGCGCCTCCACCCG 149
                       ********************************************* **************

consensus_12218#0      CCGGGCCCACTGCTCTCGTGGGCACGCCTCGCCACGTCGGATGTACACGTCGGCGGGTTC 1380
consensus_12218#1      CCGGGCCCACTGCTCTCGTGGGCACGCCTCGCCACGTCGGATGTACACGTCGGCGGGTTC 209
                       ************************************************************

consensus_12218#0      CTCATACCCTCTGGGACCACCGCCATGGTGAACATGTGGGCCATAACCCATGACCCTGCC 1440
consensus_12218#1      CTCATACCCTCTGGGACCACCGCCATGGTGAACATGTGGGCCATAACCCATGACCCTGCC 269
                       ************************************************************

consensus_12218#0      GTTTGGCCCGACCCGAACGAGTTCAAACCAGAGAGGTTCGTCGCAGGGCCCTCGTCGGAC 1500
consensus_12218#1      GTTTGGCCCGACCCGAACGAGTTCAAACCAGAGAGGTTCGTCGCAGGGCCCTCGTCGGAC 329
                       ************************************************************

consensus_12218#0      CAGGCCACGGAGTTTCCGATAATGGGGTCGGATCTCAGGCTCGCGCCGTTCGGGTCAGGA 1560
consensus_12218#1      CAGGCCACGGAGTTTCCGATAATGGGGTCGGATCTCAGGCTCGCGCCGTTCGGGTCAGGA 389
                       ************************************************************

consensus_12218#0      AGGCGAAGCTGCCCCGGCAAGTCGCTCGCCATCGCCACTGTCGGATTCTGGGTTGCCACG 1620
consensus_12218#1      AGGCGAAGCTGCCCCGGCAAGTCGCTCGCCATCGCCACTGTCGGATTCTGGGTTGCCACG 449
                       ************************************************************

consensus_12218#0      TTGCTACACGAGTTCGATTGGCTTCCCTTGTCAGATAAGTCGCGCGGCGTCGATCTGTCG 1680
consensus_12218#1      TTGCTACACGAGTTCGATTGGCTTCCCTTGTCAGATAAGTCGCGCGGCGTCGATCTGTCG 509
                       ************************************************************

consensus_12218#0      GAGGTGCTGAAGCTGTCGTGCGAGATGGCAACCCCGCTGGAGGCAAGGCTAAGGCCGCGA 1740
consensus_12218#1      GAGGTGCTGAAGCTGTCGTGCGAGATGGCAACCCCGCTGGAGGCAAGGCTAAGGCCGCGA 569
                       ************************************************************

consensus_12218#0      CGCAAGGTGTGATGACGTGTCACCACCGTCACGTGGGACTAAGACGAGGAGAGGGAAGCC 1800
consensus_12218#1      CGCAAGGTGTGATGACGTGTCACCACCGTCACGTGGGACTAAGACGAGGAGAGGGAAGCC 629
                       ************************************************************

consensus_12218#0      GACTTCCACTTCCTTCTAGTGCTTGTTGAGATGTGTAAATGTCCCTAAATGTAAAGTGTT 1860
consensus_12218#1      GACTTCCACTTCCTTTTAGTGCTTGTTGAGATGTGTAAATGTCCCTAAATGTAAAGTGTT 689
                       *************** ********************************************

consensus_12218#0      ACGCTTTGAGTAGAAATGCCCCTACGTTGTAGTGCGTAGTATTGTACACTTGTAGTATGT 1920
consensus_12218#1      ACGCTTTGAGTAGAAATGCCCCTACGTTGTAGTGCGTAGTATTGTACACTTGTAGTATGT 749
                       ************************************************************

consensus_12218#0      AATGCTTGTATTTTTGTGTGTTTTGCACGTCCTAAGTAGTGGAGTAGTAGCTGATAATAG 1980
consensus_12218#1      AATGCTTGTATTTTTGTGTGTTTTGCAAA----AAAAAAAAGA----------------- 788
                       ***************************      **  *   **                 

consensus_12218#0      TTAGTTAATTACTCTGCTATTTAGTCATAGTTAACTACCTACCTGCAGGTGATGAGAGTG 2040
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      ACAGTTTTTTTTTGTTTAATTAACTGCAGGTGATGAGTGTAGAATAGCTCGGTATGCCCA 2100
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      TCTCTATCCTAAGTGCACGCGTGCGTGTGTAATTGTTGTCAGATGTATGTTGTTTTCAAT 2160
consensus_12218#1      ------------------------------------------------------------
                                                                                   

consensus_12218#0      GATAATGTACATAATTGGGCCGAAAAAAAAAA 2192
consensus_12218#1      --------------------------------