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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1331 fasta sequence
[AAGCTTGCTACTCAGCTGCTCTAAGCTCACACCGATCCAGTAATCGAGCTCCAGACATCCATCAATGGCCATGGAGCTCTCTAACCTGACGAGGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTGCCAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGCCACTGCTCTTGAATCCTCCGGCTACTTCAGACCTTGGCATGTCCTCCCCTTCGTTGACCTCTACGGACGAAGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATATGCACTGACAGGACAACGCAGGTTAAATGCGGCTGTGACTGTACAGACTCTCATCGACGTCTTTACTGTGTCTGGCATTGTTCATTATGGCACAGCAGGAAGTTCTAATGATTCAATGTCATTTGGCGATGTCAGTGTCCCCAAATTTGTTGCTTATACAAGTGCTTGGACATGGAAGAAGTTCAAATCACC-AAAAGAGTCGGATACAGAACTTAGCTTTGGAGATTTTA-CTGTCCCAAA-TGGAGGAGAGAATCTTCTAGGAGCTCTGAAATTCAGAAATGAGGAGCTATACTCAGTGGGTAAGCCTATGAAAGAAGTTTT-CTGGTTACCTGTAGATT-CAGCATGGTTCAAAATCGCAGAAGGACTTAAGGTTTCACTTGAAAGATGTAACGACACTTTCTGCTTGCCAACAACTCCAAAAGTAGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAGACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCAGTGGTGATGACAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGAGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTCAACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCAGTGGAGTTTATTGCTACAGTCGGGAAACAGAAGTCAACAATGTCAGCAGGAAGTGCTAATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACATTTTACAGCAGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTAGTGTTGAATTATTTTGTTGAAACTTGTAAGCATGCATGTGCGATCATTTTATTGCAAATGGAATAGCAGATGATGTTGCTTTTTACGAAAAAAAACAAATTACATCAGT]
[+] EMBL OSC5711 [AAGCTTGCTACTCAGCTGCTCTAAGCTCACACCGATCCAGTAATCGAGCTCCAGACATCCATCAATGGCCATGGAGCTCTCTAACCTGACGAGGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTGNCAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGNCACTGCTCTTGAATCCTCCGGCTACTTCAGACCTTGGCATGTNCTCCCCTTCGTTGACCTCTACGGACGGAGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATAT ]
[+] EMBL AK061381 [ TCACACCGATCCAGTAATCGAGCTCCAGACATCCATCAATGGCCATGGAGCTCTCTAACCTGACGAGGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTGCCAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGCCACTGCTCTTGAATCCTCCGGCTACTTCAGACCTTGGCATGTCCTCCCCTTCGTTGACCTCTACGGACGAAGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATATGCACTGACAGGACAACGCAGGTTAAATGCGGCTGTGACTGTACAGACTCTCATCGACGTCTTTACTGTGTCTGGCATTGTTCATTATGGCACAGCAGGAAGTTCTAATGATTCAATGTCATTTGGCGATGTCAGTGTCCCCAAATTTGTTGCTTATACAAGTGCTTGGACATGGAAGAAGTTCAAATCACC AAAAGAGTCGGATACAGAACTTAGCTTTGGAGATTTTA CTGTCCCAAA TGGAGGAGAGAATCTTCTAGGAGCTCTGAAATTCAGAAATGAGGAGCTATACTCAGTGGGTAAGCCTATGAAAGAAGTTTT CTGGTTACCTGTAGATT CAGCATGGTTCAAAATCGCAGAAGGACTTAAGGTTTCACTTGAAAGATGTAACGACACTTTCTGCTTGCCAACAACTCCAAAAGTAGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAGACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCAGTGGTGATGACAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGAGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTCAACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCAGTGGAGTTTATTGCTACAGTCGGGAAACAGAAGTCAACAATGTCAGCAGGAAGTGCTAATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACATTTTACAGCAGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTAGTGTTGAATTATTTTGTTGAAACTTGTAAGCATGCATGTGCGATCATTTTATTGCAAATGGAATAGCAGATGATGTT ]
[+] EMBL AK069439 [ CCAGTAATCGAGCTCCAGACATCCATCAATGGCCATGGAGCTCTCTAACCTGACGAGGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTGCCAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGCCACTGCTCTTGAATCCTCCGGCTGCTTCAGACCTTGGCATGTCCTCCCCTTCGTTGACCTCTACGGACGAAGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATATGCACTGACAGGACAACGCAGGTTAAATGCGGCTGTGACTGTACAGACTCTCATCGACGTCTTTACTGTGTCTGGCATTGTTCATTATGGCACAGCAGGAAGTTCTAATGATTCAATGTCATTTGGCGATGTCAGTGTCCCCAAATTTGTTGCTTATACAAGTGCTTGGACATGGAAGAAGTTCAAGTCACC AAAAGAGTCGGATACAGAACTTAGCTTTGGAGATTTTA CTGTCCCAAA TGGAGGAGAGAATCTTCTAGGAGCTCTGAAATTCAGAAATGAGGAGCTATACTCAGTGGGTAAGCCTATGAAAGAAGTTTT CTGGTTACCTGTAGATT CAGCATGGTTCAAAATCGCAGAAGGACTTAAGGTTTCACTTGAAAGATGTAACGACACTTTCTGCTTGCCAACAACTCCAAAAGTAGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAGACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCAGTGGTGATGACAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGAGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTCAACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCAGTGGAGTTTATTGCTACAGTCGGGAAACAGAAGTCAACAATGTCAGCAGGAAGTGCTAATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACATTTTACAGCAGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTAGTGTTGAATTATTTTGTTGAAACTTGTAAGCATGCATGTGCGATCA ]
[+] EMBL OSS14453A [ GTAATCGAGCTCCAGACATCCATCAATGGCCATGGAGCTCTCTAACCTGACGAGGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTG CAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGCCACTGCTCTTGAATCCTCCGGCTACTTCAGACCTTGGCATGTCCTCCCCTTCGTTGACCTCTACGGACGANGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATATGCACTGACAGGACAACGCAGGTTAAATGCGGCTGTGACTGTACAGACTCTCATCGAGGTCTT ]
[+] EMBL AK104422 [ GTAATCGAGCTCCAGACATCCATCAATGGCCATGGAGCTCTCTAACCTGACGAGGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTGCCAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGCCACTGCTCTTGAATCCTCCGGCTACTTCAGACCTTGGCATGTCCTCCCCTTCGTTGACCTCTACGGACGAAGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATATGCACTGACAGGACAACGCAGGTTAAATGCGGCTGTGACTGTACAGACTCTCATCGACGTCTTTACTGTGTCTGGCATTGTTCATTATGGCACAGCAGGAAGTTCTAATGATTCAATGTCATTTGGCGATGTCAGTGTCCCCAAATTTGTTGCTTATACAAGTGCTTGGACATGGAAGAAGTTCAAATCACC AAAAGAGTCGGATACAGAACTTAGCTTTGGAGATTTTA CTGTCCCAAA TGGAGGAGAGAATCTTCTAGGAGCTCTGAAATTCAGAAATGAGGAGCTATACTCAGTGGGTAAGCCTATGAAAGAAGTTTT CTGGTTACCTGTAGATT CAGCATGGTTCAAAATCGCAGAAGGACTTAAGGTTTCACTTGAAAGATGTAACGACACTTTCTGCTTGCCAACAACTCCAAAAGTAGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAGACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCAGTGGTGATGACAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGAGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTCAACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCAGTGGAGTTTATTGCTACAGTCGGGAAACAGAAGTCAACAATGTCAGCAGGAAGTGCTAATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACATTTTACAGCAGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTAGTGTTGAATTATTTTGTTGAAACTTGTAAGCATGCATGTGCGATCATTTTATTGCAAATGGAATAGCAGATGATGTT ]
[+] EMBL AK103951 [ CAGACATCCATCAATGGCCATGGAGCTCTCTAACCTGACGAAGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTGCCAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGCCACTGCTCTTGAATCCTCCGGCTACTTCAGACCTTGGCATGTCCTCCCCTTCGTTGACCTCTACGGACGAAGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATATGCACTGACAGGACAACGCAGGTTAAATGCGGCTGTGACTGTACAGACTCTCATCGACGTCTTTACTGTGTCTGGCATTGTTCATTATGGCACAGCAGGAAGTTCTAATGATTCAATGTCATTTGGCGATGTCAGTGTCCCCAAATTTGTTGCTTATACAAGTGCTTGGACATGGAAGAAGTTCAAATCACC AAAAGAGTCGGATACAGAACTTAGCTTTGGAGATTTTA CTGTCCCAAA TGGAGGAGAGAATCTTCTAGGAGCTCTGAAATTCAGAAATGAGGAGCTATACTCAGTGGGTAAGCCTATGAAAGAAGTTTT CTGGTTACCTGTAGATT CAGCATGGTTCAAAATCGCAGAAGGACTTAAGGTTTCACTTGAAAGATGTAACGACACTTTCTGCTTGCCAACAACTCCAAAAGTAGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAGACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCAGTGGTGATGACAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGAGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTCAACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCAGTGGAGTTTATTGCTACAGTCGGGAAACAGAAGTCAACAATGTCAGCAGGAAGTGCTAATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACATTTTACAGCAGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTAGTGTTGAATTATTTTGTCGAAACTTGTAAGCATGCATGTGCGATCATTTTATTGCAAATGGAATAGCAGATGATGTT ]
[+] EMBL CA753697 [ ACATCCATCAATGGCCATGGAGCTCTCTAACCTGACGAGGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTGCCAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGCCACTGCTCTTGAATCCTCCGGCTACTTCAGACCTTGGCATGTCCTCCCCTTCGTTGACCTCTACGGACGAAGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATATGCACTGACAGGACAACGCAGGTTAAATGCGGCTGTGACTGTACAGACTCTCATCGACGTCTTTACTGTGTCTGGCATTGTTCATTATGGCACAGCAGGAAGTTCTAATGATTCAATGTCATTTGGCGATGTCAGTGTCCCCAAATTTGTTGCCTATACCAGTGCCTGGACATGGAAGAAGTTCAAATCACCAAAAAGAGTCGGATACAGAACTTAGCTTGGGAGATTTTACCTGTCCCAAATTGGAGGAGAGAATTTTCTAGGAGC ]
[+] EMBL AK104612 [ TCAATGGCCATGGAGCTCTCTAACCTGACGAGGTGCCATCTGCCACTGCTCCTGCTCTTCCTGCTGGCAGGATCCTCCTCCATGGCTTTGCCAGTGCATCCTGCAATGGACAGGGTGAGATGGCAGGTCGACAAGGTCAACCGGCGGGGCCATTCCATCGGGCTCGTCATGTCGTACATCGATGAGGCCACTGCTCTTGAATCCTCCGGCTACTTCAGACCTTGGCATGTCCTCCCCTTCGTTGACCTCTACGGACGAAGGTATCACATCGGGAGTATTAGAGGTGTCAATGTTATATATGCACTGACAGGACAACGCAGGTTAAATGCGGCTGTGACTGTACAGACTCTCATCGACGTCTTTACTGTGTCTGGCATTGTTCATTATGGCACAGCAGGAAGTTCTAATGATTCAATGTCATTTGGCGATGTCAGTGTCCCCAAATTTGTTGCTTATACAAGTGCTTGGACATGGAAGAAGTTCAAATCACC AAAAGAGTCGGATACAGAACTTAGCTTTGGAGATTTTA CTGTCCCAAA TGGAGGAGAGAATCTTCTAGGAGCTCTGAAATTCAGAAATGAGGAGCTATACTCAGTGGGTAAGCCTATGAAAGAAGTTTT CTGGTTACCTGTAGATT CAGCATGGTTCAAAATCGCAGAAGGACTTAAGGTTTCACTTGAAAGATGTAACGACACTTTCTGCTTGCCAACAACTCCAAAAGTAGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAGACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCAGTGGTGATGACAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGAGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTCAACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCAGTGGAGTTTATTGCTACAGTCGGGAAACAGAAGTCAACAATGTCAGCAGGAAGTGCTAATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACATTTTACAGCAGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTAGTGTTGAATTATTTTGTTGAAACTTGTAAGCATGCATGTGCGATCATTTTATTGCAAATGGAATAGCAGATGATGTTGCTTTTTACGAAAAAAAACAAATTACATCAGT]
[+] EMBL AU032452 [ gGGAGG GA AATCTTCTAGGNGCTCTGAAATTCAGAAATGAGGAGCTATACTCAGTGGGTAANCCTATGAAAGAAGTTTT CTGGTTACCTGTAGATT CAGCATGGTTCAAAATCGCAGAAGGACTTAAGGTTTCACTTGAAAGATGTAACGACACTTTCTGCTTGCCAACAACTCCAAAAGTNGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAGACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCNGTGGTGATGACAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGNGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTCAACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCNGTGGNGTTTATTGCTACAGTCGGGAAACAGNNGTCAACAATGTCAGCAGGAAGTGCTNATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACATTTTACAGCNGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTNGTGTTGAATTATTTTGTTGAAACTTGTAAGCATGNATGTGCGATCATTTTATTGCAAATGGNATAGCNGATGATGTTGCTTTTTACGAAAAAAAA ]
[+] EMBL AU082176 [ cCCTATGAAAGAAGTTTTCCTGNTTACCTGTAGATTCCAGCATGGTTCAAAATCGCAGAAGGACTTAAGGTTTCNCTTGAAAGATGTAACGACACTTTCTGCTTGCCAACAACNCCAAAAGTAGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAGACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCAGTGGTGATGNCAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGAGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTCAACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCAGTGGAGTTTATTGCTACAGTCGGGAAACAGAAGTCAACAATGTCAGCAGGAAGTGCTAATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACATTTTACAGCAGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTAGTGTTGAATTATTTTGTTGAAACTTGTAAGCATGCATGTGCGATCATTTTATTGCAAATGGAATAGCAGATGATGTTGCTTTTAAAAAAAAAAA ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||