These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1077 fasta sequence [ATTCCATTCCCGGATTGCGCCGCCGCCGGTGTTGCAGCAGCCATGGGGATGGGGCCACTAGAGAACGCCGTGGTGGACGCGGCGGCGGAGGCCGTGGCGGCGAAGGCCGCGGTCGGCGGCGTGGGCGTGGGGGGTTCGTACGCGGTGCTGCAGTGCGGGGAGGACTCGGAGTACGTGAGGAAGGCGTACGGGGGCTACTTCGAGGTGTTCAGGGCGCTGCTGGCGGAGGACGGCGAGCGGTGGCGGGTGTACCGCGCCGTGCGCGGGGAGCTCCCCGGGGAGGAGGAGGCCGCGGGGATCGACGGGTTCGTCATCTCCGGGAGCTGCAGCGACGCCCACGCCGACGACCCGTGGATCGTCGCCCTCGTCGACCTCATCCGCCGCCAGAACGCCGCCGGCAAGCGCATCCTCGGCGTCTGC-TTCGGCCACCAGGTCCTGTGCCGAGCGCTGGGCGGCAAGACGGGCCGATCGAAGAAGGGCTGGGACATCGGCGTGAAC-TGCATCCACCCCACCGC-GGCCATGGCGAGGCTCTTTTCGCCGATCAAGCTCCCCGTCCACATGCCCATCATCGAGTTCCACCAAGATGAGGTGTGGGAGCTGCCTCCTCAGGCCGAGGTGCTGGCGCGGTCGGACATGACCGGCGTCGAGATGTTCCGTCTCGGCGACCGCGCCATGGGCGTCCAGGGCCACCCGGAGTACAGCAAGGACATCCTCATGAGCATCGCCGACCGTCTCCTCCGGAACGATCTCATCCTGGATCACCAGGTGGATAAGGCGAAGGCGAGCTTCGACTTGCGGCAACCAGACAAGGATCTGTGGAAGAAGGTGTGCAGGGGTTTTCTGAAGGGGAGGCTTCAGTCATCGCAGCAGCCGCAGCAGCAGCAACATCAGAAGCAGCAGAAGGCGGCGCAGCTGGTGCTATAGTAAACAAGATTAGTGAGTGAGATCAGATGGGGGCATTGGGGAGCCTAGATTAATCCTTATTTTCTGCTTCAGATTTGTACAGG-AAAAAAACTATTTATTCGGAGCAATAATAAGAGAGTAATTGGGGGTGGCCTAATTAGCAAAAGAAAGAAA] [+] EMBL AK071046 [ATTCCATTCCCGGATTGCGCCGCCGCCGGTGTTGCAGCAGCCATGGGGATGGGGCCACTAGAGAACGCCGTGGTGGACGCGGCGGCGGAGGCCGTGGCGGCGAAGGCCGCGGTCGGCGGCGTGGGCGTGGGGGGTTCGTACGCGGTGCTGCAGTGCGGGGAGGACTCGGAGTACGTGAGGAAGGCGTACGGGGGCTACTTCGAGGTGTTCAGGGCGCTGCTGGCGGAGGACGGCGAGCGGTGGCGGGTGTACCGCGCCGTGCGCGGGGAGCTCCCCGGGGAGGAGGAGGCCGCGGGGATCGACGGGTTCGTCATCTCCGGGAGCTGCAGCGACGCCCACGCCGACGACCCGTGGATCGTCGCCCTCGTCGACCTCATCCGCCGCCAGAACGCCGCCGGCAAGCGCATCCTCGGCGTCTGC TTCGGCCACCAGGTCCTGTGCCGAGCGCTGGGCGGCAAGACGGGCCGATCGAAGAAGGGCTGGGACATCGGCGTGAAC TGCATCCACCCCACCGC GGCCATGGCGAGGCTCTTTTCGCCGATCAAGCTCCCCGTCCACATGCCCATCATCGAGTTCCACCAAGATGAGGTGTGGGAGCTGCCTCCTCAGGCCGAGGTGCTGGCGCGGTCGGACATGACCGGCGTCGAGATGTTCCGTCTCGGCGACCGCGCCATGGGCGTCCAGGGCCACCCGGAGTACAGCAAGGACATCCTCATGAGCATCGCCGACCGTCTCCTCCGGAACGATCTCATCCTGGATCACCAGGTGGATAAGGCGAAGGCGAGCTTCGACTTGCGGCAACCAGACAAGGATCTGTGGAAGAAGGTGTGCAGGGGTTTTCTGAAGGGGAGGCTTCAGTCATCGCAGCAGCCGCAGCAGCAGCAACATCAGAAGCAGCAGAAGGCGGCGCAGCTGGAGCTATAGTAAACAAGATTAGTGAGTGAGATCAGATGGGGGCATTGGGGAGCCTAGATTAATCCTTATTTTCTGCTTCAGATTTGTACAGG AAAAAAACTATTTATTCGGAGCAATAATAAGAGAGTAATTGGGGGTGG ] [+] EMBL OSS14689A [ATTCCATTCCCGGATTGNNCCGCCGCCGGTGTTGCAGCAGCCATGGGGATGGGGCCACTAGAGAACGCCGTGGTGGACGCGGCGGCGGAGGCCGTGGCGGCGAAGGCCNGNNTCGGCGGCGTGGGCGTGGGGGGTTCGTACNCGGTGCTGCAGTNCGGGGAGGACTCGGAGTACGTGAGGAAGGCGTACGGGGGCTACTTCGAGGTGTTCAGGGNGCTNCTGGCGGAGGACGGCGAGC ] [+] EMBL AU101379 [ CATCCGCCGCCAGAACGCCGCCGGCAAGCGCATCCTCGGCGTCTGC TTCGGCCACCAGGTCCTGTGCCGAGCGCTGGGCGGCAAGACGGGCCGATCGAAGAAGGGCTGGGACATCGGCGTGAAC TGCATCCACCCCACCGC GGCCATGGCGAGGCTCTTTTCGCCGATCAAGCTCCCCGTCCACATGCCCATCATCGAGTTCCACCAAGATGAGGTGTGGGAGCTGCCTCCTCAGGCCGAGGTGCTGGCGCGGTCGGACATGACCGGCGTCGAGATGTTCCGTCTCGGCGACCGCGCCATGGGCGTCCAGGGCCACCCGGAGTACAGCAAGGACATCCTCATGAGCATCGCCGACCGTCTCCTCCGGAACGATCTCATCCTGGATCACCAGGTGGATAAGGCGAAGGCGAGCTTCGACTTGCGGCAACCAGACAAGGATCTGTGGAAGAAGGTGTGCAGGGGTTTTCTGAAGGGGAGGCTTCAGTC ] [-] EMBL CB633618 [ AGAACGCCGCCGGCAAGCGCATCCTCGGCGTCTGC TTCGGCCACCAGGTCCTGTGCCGAGCGCTGGGCGGCAAGACTGGCCGATCGAAGAAGGGCTGGGACATCGGCGTGAAC TGCATCCACCCCACCGC GGCCATGGCGAGGCTCTTTTCGCCGATCAAGCTCCCCGTCCACATGCCCATCATCGAGTTCCACCAAGATGAGGTGTGGGAGCTGCCTCCTCAGGCCGAGGTGCTGGCGCGGTCGGACATGACCGGCGTCGAGATGTTCCGTCTCGGAGACCGCGCCATGGGCGTCCAGGGCCACCCGGAGTACAGCAAGGACATCCTCATGAGCATCGCCGACCGTCTCCTCCGGAACGATCTCATCCTGGATCACCAGGTGGATAAGGCGAAGGCGAGCTTCGACTTGCGGCAACCAGACAAGGATTTGTGGAAGAAGGTGTGCAGGGGTTTTCTGAAGGGGAGGCTTCAGTCATCGCAGCAGCCGCAGCAGCAGCAACATCAGAAGCAGCAGAAGGCGGCGCAGCTGGTGCTATAGTAAACAAGATTAGTGAGTGAGATCAGATGGGGGCATTGGGGAGCCTAGATTAATCCTTATTTTCTGCTTCAGATTTGTACAGGAAAAAAAACTATTTATTCGGAGCAATGATAAGAGAGTAATTGGGGGTGGCCTAATTAGCAAAAGAAAGA ] [+] EMBL AU101380 [ gGGCAAGGGCATCCTCGGCGTCTGCTTTCGGCCACCAGGTCNTGTGCCAAGCGNTGGNCGGCAAGACGGGCCGATCGAAGAAGGGCTGGGACATCGGCGTGAACTTGCATCCACCCCACCGCGGGCCATGGCGAGGCTCTTTTCGCCGATCAAGCTCCCCGTCCACATGCCCATCATCGAGTTCCACCAAGATGAGGTGTGGGAGCTGCCTCCTCAGGCCGAGGTGCTGGCGCGGTCGGACATGACCGGCGTCGAGATGTTCCGTCTCGGCGACCGCGCCATGGGCGTCCAGGGCCACCCGGAGTACAGCAAGGACATCCTCATGAGCATCGCCGACCGTCTCCTCCGGAACGATCTCATCCTGGATCACCAGGTGGATAAGGCGAAGGCGAGCTTCGACTTGCGGCAACCAGACAAGGATCTGTGGAAGAAGGTGTGCAGGGGTTTTCTGAAGGGGAGGCTTCAGTCATCGCAGCAGCCGCAGCAGCAGCAACATCAGAAGCAGCAGAAGGCGGCGCAGCTGGTGCTATAGTAAACAAGATTAGTGAGTGAGATCAGATGGGGGCATTGGGGAGCCTAGATTAATCCTTATTTTCTGCTTCAGATTTGTACAGG AAAAAAACTATTTATTCGGAGCAATAATAAGAGAGTAATTGGGGGTGGCCTAATTAGCAAAAAAAAAAAA] consensusID : consensus_12235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 554 fasta sequence [CTCTTTTCCCGATCAAGCTCCCCGTGCCACATGCCCATCA-TC-GAGTTCCA-CCAAGATGAGGTGTGGGACTGCCTCCTCAGGCCGAGGTGCTGGCGCGGTCGGACATGACCGGCGTCGAGATGTTCCGTCTCGGAGACCGCGCCATGGGC-GTCCAGGGCCACCCGGAG-TACAG-CAAGGACATCCTCATGAGCATCGCCGACCGTCTCCTCCGGAACGATCTCATCCTGGATCACCAGGTGGATAAGGCGAAGGCGAGCTTCGACTTGCGGCAACCAGACAAGGATTTGTGGAAGAAGGTGTGCAGGGGTTTTCTGAAGGGGAGGCTTCAGTCATCGCAGCAGCCGCAGCAGCAGCAACATCAGAAGCAGCAGAAGGCGGCGCAGCTGGTGCTATAGTAAACAAGATTAGTGAGTGAGATCAGATGGGGGCATTGGGGAGCCTAGATTAATCCTTATTTTCTGCTTCAGATTTGTACAGGAAAAAAAACTATTTATTCGGACCAATAATAAGAGAGTAATT-GGGGTGCCCTAATTACCAAATCCCATTTGCCAAAA] [+] EMBL BI798075 [CTCTTTTCCCGATCAAGCTCCCCGTGCCACATGCCCATCA TC GAGTTCCACCCAAGATGAGGTGTGGGACTGCCTCCTCA GCCGAGGT CTGGC CGTTCGGACATGACCGGCGTCGAGATGTTCCGTCTCGGAGACCGCGCCATGGGC GTCCAGGGCCACCCGGAG TACAG CAAGGACATCCTCATGAGCATCGCCGACCGTCTCCTCCGGAACGATCTCATCCTGGATCACCAGGTGGATAAGGCGAAGGCGAGCTTCGACTTGCGGCAACCAGACAAGGATTTGTGGAAGAAGGTGTCCAGGGGTTTTCTGAAGGGGAGGCTTCAGTCATCGCAGCAGCCGCAGCAGCAGCAACATCAGAAGCAGCAGAA GCGGCCCAGCCCCTGCTATAGTAAACAAGATTAGTGAGTGAGATCAGATGGGGCCATTGGGGAGCCTAGATTAATCCTTATTTTCTGCTTCAGATTTGTACAGGAAAAAAAACTATTTATTCGGCCCAATAATAAGAGAGTAATT GGGCCCCCT ATTACCCAATCCCATTTGCCAAAA] [+] EMBL BI799626 [ AGCTCCCCGT CCACATGCCCATCA TC GAGTTCCA CCAAGATGAGGTGTGGGACTGCCTCCTCAGGCCGAGGTGCTGGCGCGGTCGGACATGACCGGCGTCGAGATGTTCCGTCTCGGAGACCGCGCCATGGGC GTCCAGGGCCACCCGGAG TACAG CAAGGACATCCTCATGAGCATCGCCGACCGTCTCCTCCGGAACGATCTCATCCTGGATCACCAGGTGGATAAGGCGAAGGCGAGCTTCGACTTGCGGCAACCAGACAAGGATTTGTGGAAGAAGGTGTGCAGGGGTTTTCTGAAGGGGAGGCTTCAGTCATCGCAGCAGCCGCAGCAGCAGCAACATCAGAAGCAGCAGAAGGCGGCGCAGCTGGTGCTATAGTAAACAAGATTAGTGAGTGAGATCAGATGGGGGCATTGGGGAGCCTAGATTAATCCTTATTTTCTGCTTCAGATTTGTACAGGAAAAAAAACTATTTATTCGGAGCAATAATAAGAGAGTAATTGGGGGTGGCCTAATTAGCAAATCCCATTTGCCAAAA] [+] EMBL BI796539 [ ATCATTCGGAGTTCCA CCAAGATGA GTGTGGGACTGCCTCCTCAGGCCGAGGTGCTGGCGCGGTCGGACATGACCGGCGTCGAGATGTTCCGTCTCGGAGACCGCGCCATGGGCAGTCCAGGGCCACCCGGAGTTACAG CAAGGACATCCTCATGAGCATCGCCGACCGTCTCCTCCGGAACGATCTCATCCTGGATCACCAGGTGGATAAGGCGAAGGCGAGCTTCGACTTGCGGCAACCAGACAAGGATTTGTGGAAGAAGGTGTGCA GGGTTTTCTGAAGGGGAGGCT ] [+] EMBL BI799261 [ GATGTTCCGTCTCGGAGACCGCCCCATGGGC GTCCAGGCCCACCCGGAG TACAGCCAAGGACATCCTCATGAGCATC CCGACCGTCTCCTCCGGAACGATCTCATCCTGGATCACCAGGTGGATAAGGCGAAGGCGAGCTTCGACTTGCGGCAACCAGACAAGGATTTGTGGAAGAAGGTGTGCAGGGGTTTTCTGAAGGGGAGGCTTCAGTCATCGCAGCAGCCGCAGCAGCAGCAACATCAGAAGCAGCAGAAGGCGGCGCAGCTGGTGCTATAGTAAACAAGATTAGTGAGTGAGATCAGAT GGGGCATTGGGGA CCTAGATTAATCCTTATTTTCTGCTTCAGATTTGTACAGGAAAAAAAACTATTTATTCGGACC ATAATAAGAGAGTAATT GGGGTGCCCTAATTA CAAATCCCA TTGCCAAAA] consensusID : consensus_12235#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence [ATTCCATTCCCGGATTGNGCCGCCGCCGGTGTTGCAGCAGCCATGGGGATGGGGCCACTAGAGAACGCCGTGGTGGACGCGGCGGCGGAGGCCGTGGCGGNGAAGGCCNTAGTCGNNGGTGTAGGCTTNNGAGGTTCGTACGNGTTACTGCAGTNCGGGGAGGACTCGGAGTACGTAAGGAAGGCGTACGG] [+] EMBL OSS10787A [ATTCCATTCCCGGATTGNGCCGCCGCCGGTGTTGCAGCAGCCATGGGGATGGGGCCACTAGAGAACGCCGTGGTGGACGCGGCGGCGGAGGCCGTGGCGGNGAAGGCCNTAGTCGNNGGTGTAGGCTTNNGAGGTTCGTACGNGTTACTGCAGTNCGGGGAGGACTCGGAGTACGTAAGGAAGGCGTACGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12235#0 ATTCCATTCCCGGATTGCGCCGCCGCCGGTGTTGCAGCAGCCATGGGGATGGGGCCACTA 60 consensus_12235#1 ------------------------------------------------------------ consensus_12235#2 ------------------------------------------------------------ consensus_12235#0 GAGAACGCCGTGGTGGACGCGGCGGCGGAGGCCGTGGCGGCGAAGGCCGCGGTCGGCGGC 120 consensus_12235#1 ------------------------------------------------------------ consensus_12235#2 ------------------------------------------------------------ consensus_12235#0 GTGGGCGTGGGGGGTTCGTACGCGGTGCTGCAGTGCGGGGAGGACTCGGAGTACGTGAGG 180 consensus_12235#1 ------------------------------------------------------------ consensus_12235#2 ------------------------------------------------------------ consensus_12235#0 AAGGCGTACGGGGGCTACTTCGAGGTGTTCAGGGCGCTGCTGGCGGAGGACGGCGAGCGG 240 consensus_12235#1 ------------------------------------------------------------ consensus_12235#2 ------------------------------------------------------------ consensus_12235#0 TGGCGGGTGTACCGCGCCGTGCGCGGGGAGCTCCCCGGGGAGGAGGAGGCCGCGGGGATC 300 consensus_12235#1 ------------------------------------------------------------ consensus_12235#2 ------------------------------------------------------------ consensus_12235#0 GACGGGTTCGTCATCTCCGGGAGCTGCAGCGACGCCCACGCCGACGACCCGTGGATCGTC 360 consensus_12235#1 ------------------------------------------------------------ consensus_12235#2 ------------------------------------------------------------ consensus_12235#0 GCCCTCGTCGACCTCATCCGCCGCCAGAACGCCGCCGGCAAGCGCATCCTCGGCGTCTGC 420 consensus_12235#1 ------------------------------------------------------------ consensus_12235#2 ------------------------------------------------------------ consensus_12235#0 TTCGGCCACCAGGTCCTGTGCCGAGCGCTGGGCGGCAAGACGGGCCGATCGAAGAAGGGC 480 consensus_12235#1 ------------------------------------------------------------ consensus_12235#2 ------------------------------------------------------------ consensus_12235#0 TGGGACATCGGCGTGAACTGCATCCACCCCACCGCGGCCATGGCGAGGCTCTTTTCGCCG 540 consensus_12235#1 ------------------------------------------------CTCTTTTC-CCG 11 consensus_12235#2 ------------------------------------------------------------ consensus_12235#0 ATCAAGCTCCCCGT-CCACATGCCCATCATCGAGTTCCACCAAGATGAGGTGTGGGAGCT 599 consensus_12235#1 ATCAAGCTCCCCGTGCCACATGCCCATCATCGAGTTCCACCAAGATGAGGTGTGGGA-CT 70 consensus_12235#2 ------------------------------------------------------------ consensus_12235#0 GCCTCCTCAGGCCGAGGTGCTGGCGCGGTCGGACATGACCGGCGTCGAGATGTTCCGTCT 659 consensus_12235#1 GCCTCCTCAGGCCGAGGTGCTGGCGCGGTCGGACATGACCGGCGTCGAGATGTTCCGTCT 130 consensus_12235#2 ------------------------------------------------------------ consensus_12235#0 CGGCGACCGCGCCATGGGCGTCCAGGGCCACCCGGAGTACAGCAAGGACATCCTCATGAG 719 consensus_12235#1 CGGAGACCGCGCCATGGGCGTCCAGGGCCACCCGGAGTACAGCAAGGACATCCTCATGAG 190 consensus_12235#2 ------------------------------------------------------------ consensus_12235#0 CATCGCCGACCGTCTCCTCCGGAACGATCTCAT-CCTGGATCACCAGGTGGATAAGGCGA 778 consensus_12235#1 CATCGCCGACCGTCTCCTCCGGAACGATCTCAT-CCTGGATCACCAGGTGGATAAGGCGA 249 consensus_12235#2 --------------------------ATTCCATTCCCGGATTGNGCCGCCGCCGGTGTTG 34 ** *** ** **** * * * consensus_12235#0 AGGCGAGCTTCGACTTGCGGCAACCAGACAAGGATCTGTGGAAGAAGGTGTGCAGGGGTT 838 consensus_12235#1 AGGCGAGCTTCGACTTGCGGCAACCAGACAAGGATTTGTGGAAGAAGGTGTGCAGGGGTT 309 consensus_12235#2 CAGCAGCCATGGGGATGGGGCCACTAGAGAACG--CCGTGGTGGACGCGGCGGCGGAGGC 92 ** * * * ** *** ** *** ** * **** ** * * * ** * consensus_12235#0 TTCTGAAGGGGAGGCTTCAGTCATCGCAGCAGCCGCAGCAGCAGCAACATCAGAAGCAGC 898 consensus_12235#1 TTCTGAAGGGGAGGCTTCAGTCATCGCAGCAGCCGCAGCAGCAGCAACATCAGAAGCAGC 369 consensus_12235#2 CGTGGCGGNGAAGGCCNTAGTCGNNGGTGTAGGCTTNNGAG-GTTCGTACGNGTTACTGC 151 * * * **** **** * * ** * ** * * * ** consensus_12235#0 AGAAGGCGGCGCAGCTGGTGCTATAGTAAACAAGATTAGTGAGTGAGATCAGATGGGGGC 958 consensus_12235#1 AGAAGGCGGCGCAGCTGGTGCTATAGTAAACAAGATTAGTGAGTGAGATCAGATGGGGGC 429 consensus_12235#2 AGTNCGGGGAGGACTCGGAG-TAC-GTAAGGAAGGCGTACGG------------------ 191 ** * ** * * ** * ** **** *** * consensus_12235#0 ATTGGGGAGCCTAGATTAATCCTTATTTTCTGCTTCAGATTTGTACAGGAAAAAAA-CTA 1017 consensus_12235#1 ATTGGGGAGCCTAGATTAATCCTTATTTTCTGCTTCAGATTTGTACAGGAAAAAAAACTA 489 consensus_12235#2 ------------------------------------------------------------ consensus_12235#0 TTTATTCGGAGCAATAATAAGAGAGTAATTGGGGGTGGCCTAATTAGCAAAAGAAAGAAA 1077 consensus_12235#1 TTTATTCGGACCAATAATAAGAGAGTAATTGGGG-TGCCCTAATTACCAAATCCCATTTG 548 consensus_12235#2 ------------------------------------------------------------ consensus_12235#0 ------ consensus_12235#1 CCAAAA 554 consensus_12235#2 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||