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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2271 fasta sequence
[TTGAGCCTCAGCTCGCGCACTCACGAGCCGCGGCTTCACTCACCACTCCCCAGTCGCCACGCCTCGGCCCGACGGGATGGGAAGGGGAGCCCCATCCTCCCATCCGCCGCCATGGCGCCGCCTCCTCCGCTACGCCCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCACTTCCGAGGCTAATGAACAACTTGCTGAGTTTCCACCAAGAGGCTGGAATTCCTATGATTCCTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGGCAGAAAAATTGCTCCCACATGGATATGAGTTTGCAGTTATTGATTACCTCTGGTACCGAAAGTATGTTCATGGGGCATACACAGATTCATATGGATTTGATAACATTGATGAGTGGGGTCGGCCATTTCCTGATCTTCAAAGATTTCCATCATCCAGAATTGATAAAGGGTTCAGTCAACTTGCGAACAAGGTGCATGGAATGGGCTTGAAATTCGGAATCCATTTAATGAAAGGGATAAGTTTACAGGCTGTGAATGGAAACACACCCATATTGGACATTAAAACGGGAAAACCCTACGTAGAGGATGGCCGGCAATGGACAGCTCGTGATATAGGTCTTACACATAGAACATGTGCATGGATGCCACATGGATTTATGAGTGTAAATACTGATATTGGAGCTGGAAAGGCCTTCCTAAGATCTCTTTATCAACAGTACGCTGATTGGGGTGTTGATTTTGTGAAGGTTGATTGTATCTTCGGTACGGATTACAGCCCAAAAGAAATCATAACTATTTCAGAGCTCTTGGCAGAGCTTGACCGCCCCATCATCCTGTCCATCTCACCAGGAACCGAAGTGACTCCAGCATTAGCCAAAAACATCAGTCAACATGTTAACATGTACAGGATAACAGGGGATGATTGGGACAACTGGAAGGATGTTAGTTCACATTTTGACGTGTCTAGTTCCTTTGCTGCTGCAAATAAAATTGGGGCCATAGGATTACGAGGAAGATCTTGGCCAGATTTAGACATGCTCCCATTTGGCTGGCTTACAAATGCAGGTGTCAATCAGGGTCCACATAGGCAATGTGAACTTACATCTGATGAACAGAGAACACAGATAGCACTTTGGTCAATGGCTAAGTCTCCTCTAATGTATGGAGGAGATTTGAGGCATCTCGACAATGACACGTTAAGCATAATAACAAATCCTACATTACTGAAAATAAATCACTACAGCATAAATAATATGGAGTTCCATCATGTGCACAGTGAAAGGACTTCCAAAGAAGACAAGCATTCTAGTCGTTTCATATCCGAAGATCTTGTACACGTACCAAAGATTGATGGTGTATCTCTTGGTCTCACTGCCTGCAGTGATGACAAAGCAAATGGATGGTATATGTTTTCACAACATGGTAAATCAGATCATATATGCAGGAACTATGGGATGCAGGATGACAAAAATATCTCATTTTGCCTGGGCAAAACAATTCCTCTCCTGACATCGGATGATATAATCGTACATAATGAAGAATACCAAACAAAGTTTCACCTGGCAAATATGGACAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGGAGGACATCCTCAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATAAAGGAGTTGTAACTA-CAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGGAGAAATATACCTGGCGTTCTTCAA-CCTTGACTCCATGAG-CAGGAAGATAA-CCGCGAGAATATCAGACCTGGAAAAGGTTCTCGGGAGTACATTCATAAGAAAAGACACGTGCAGCTGC-ACTGAAGTTTGGAGCGGGAGGAATTTCGGTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAAATCACATGGTTCCA-TGGTGTTTGAAATTACA-TGTTGAGGTATCCCATAATTCTCCTATTGCGCTTA-CTGAAGCATGACA-GGATGGAATAGATAAGTAGGGAAAAGAGCCTTGAGCATGTATCAGGTAAAGCTACCAAAATGAACATCCTTTAAAAG-GCTGGGGTTTCA-GTTTAAAATCTGGGGGTTGTGGGCTTTAAATGAGGCCTAAAAGAACAAAAAAAATTCCGGAATACGGAGCTATATATGCAACACCACTCACTAATGAAGGAACCAAATGCGAAG]
[+] EMBL AK067743 [TTGAGCCTCAGCTCGCGCACTCACGAGCCGCGGCTTCACTCACCACTCCCCAGTCGCCACGCCTCGGCCCGACGGGATGGGAAGGGGAGCCCCATCCTCCCATCCGCCGCCATGGCGCCGCCTCCTCCGCTACGCCCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCACTTCCGAGGCTAATGAACAACTTGCTGAGTTTCCACCAAGAGGCTGGAATTCCTATGATTCCTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGGCAGAAAAATTGCTCCCACATGGATATGAGTTTGCAGTTATTGATTACCTCTGGTACCGAAAGTATGTTCATGGGGCATACACAGATTCATATGGATTTGATAACATTGATGAGTGGGGTCGGCCATTTCCTGATCTTCAAAGATTTCCATCATCCAGAATTGATAAAGGGTTCAGTCAACTTGCGAACAAGGTGCATGGAATGGGCTTGAAATTCGGAATCCATTTAATGAAAGGGATAAGTTTACAGGCTGTGAATGGAAACACACCCATATTGGACATTAAAACGGGAAAACCCTACGTAGAGGATGGCCGGCAATGGACAGCTCGTGATATAGGTCTTACACATAGAACATGTGCATGGATGCCACATGGATTTATGAGTGTAAATACTGATATTGGAGCTGGAAAGGCCTTCCTAAGATCTCTTTATCAACAGTACGCTGATTGGGGTGTTGATTTTGTGAAGGTTGATTGTATCTTCGGTACGGATTACAGCCCAAAAGAAATCATAACTATTTCAGAGCTCTTGGCAGAGCTTGACCGCCCCATCATCCTGTCCATCTCACCAGGAACCGAAGTGACTCCAGCATTAGCCAAAAACATCAGTCAACATGTTAACATGTACAGGATAACAGGGGATGATTGGGACAACTGGAAGGATGTTAGTTCACATTTTGACGTGTCTAGTTCCTTTGCTGCTGCAAATAAAATTGGGGCCATAGGATTACGAGGAAGATCTTGGCCAGATTTAGACATGCTCCCATTTGGCTGGCTTACAAATGCAGGTGTCAATCAGGGTCCACATAGGCAATGTGAACTTACATCTGATGAACAGAGAACACAGATAGCACTTTGGTCAATGGCTAAGTCTCCTCTAATGTATGGAGGAGATTTGAGGCATCTCGACAATGACACGTTAAGCATAATAACAAATCCTACATTACTGAAAATAAATCACTACAGCATAAATAATATGGAGTTCCATCATGTGCACAGTGAAAGGACTTCCAAAGAAGACAAGCATTCTAGTCGTTTCATATCCGAAGATCTTGTACACGTACCAAAGATTGATGGTGTATCTCTTGGTCTCACTGCCTGCAGTGATGACAAAGCAAATGGATGGTATATGTTTTCACAACATGGTAAATCAGATCATATATGCAGGAACTATGGGATGCAGGATGACAAAAATATCTCATTTTGCCTGGGCAAAACAATTCCTCTCCTGACATCGGATGATATAATCGTACATAATGAAGAATACCAAACAAAGTTTCACCTGGCAAATATGGACAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGGAGGACATCCTCAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATAAAGGAGTTGTAACTA CAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGGAGAAATATACCTGGCGTTCTTCAA CCTTGACTCCATGAG CAGGAAGATAA CCGCGAGAATATCAGACCTGGAAAAGGTTCTCGGGAGTACATTCATAAGAAAAGACACGTGCAGCTGC ACTGAAGTTTGGAGCGGGAGGAATTTCGGTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAAATCACATGGTTCCA TGGTGTTTGAAATTACA TGTTGAGGTATCCCATAATTCTCCTATTGCGCTTA CTGAAGCATGACA GGATGGAATAGATAAGTAGGGAAAAGAGCCTTGAGCATGTATCAGGTAAAGCTACCAAAATG ]
[+] EMBL AK072383 [ ACGAGCCGCGGCTTCACTCACCACTCCCCAGTCGCCACGCCTCGGCCCGACGGGATGGGAAGGGGAGCCCCATCCTCCCATCCGCCGCCATGGCGCCGCCTCCTCCGCTACGCCCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCACTTCCGAGGCTAATGAACAACTTGCTGAGTTTCCACCAAGAGGCTGGAATTCCTATGATTCCTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGGCAGAAAAATTGCTCCCACATGGATATGAGTTTGCAGTTATTGATTACCTCTGGTACCGAAAGTATGTTCATGGGGCATACACAGATTCATATGGATTTGATAACATTGATGAGTGGGGTCGGCCATTTCCTGATCTTCAAAGATTTCCATCATCCAGAATTGATAAAGGGTTCAGTCAACTTGCGAACAAGGTGCATGGAATGGGCTTGAAATTCGGAATCCATTTAATGGAAGGGATAAGTTTACAGGCTGTGAATGGAAACACACCCATATTGGACATTAAAACGGGAAAACCCTACGTAGAGGATGGCCGGCAATGGACAGCTCGTGATATAGGTCTTACACATAGAACATGTGCATGGATGCCACATGGATTTATGAGTGTAAATACTGATATTGGAGCTGGAAAGGCCTTCCTAAGATCTCTTTATCAACAGTACGCTGATTGGGGTGTTGATTTTGTGAAGGTTGATTGTATCTTCGGTACGGATTACAGCCCAAAAGAAATCATAACTATTTCAGAGCTCTTGGCAGAGCTTGACCGCCCCATCATCCTGTCCATCTCACCAGGAACCGAAGTGACTCCAGCATTAGCCAAAAACATCAGTCAACATGTTAACATGTACAGGATAACAGGGGATGATTGGGACAACTGGAAGGATGTTAGTTCACATTTTGACGTGTCTAGTTCCTTTGCTGCTGCAAATAAAATTGGGGCCATAGGATTACGAGGAAGATCTTGGCCAGATTTAGACATGCTCCCATTTGGCTGGCTTACAAATGCAGGTGTCAATCAGGGTCCACATAGGCAATGTGAACTTACATCTGATGAACAGAGAACACAGATAGCACTTTGGTCAATGGCTAAGTCTCCTCTAATGTATGGAGGAGATTTGAGGCATCTCGACAATGACACGTTAAGCATAATAACAAATCCTACATTACTGAAAATAAATCACTACAGCATAAATAATATGGAGTTCCATCATGTGCACAGTGAAAGGACTTCCAAAGAAGACAAGCATTCTAGTCGTTTCATATCCGAAGATCTTGTACACGTACCAAAGATTGATGGTGTATCTCTTGGTCTCACTGCCTGCAGTGATGACAAAGCAAATGGATGGTATATGTTTTCACAACATGGTAAATCAGATCATATATGCAGGGACTATGGGATGCAGGATGACAAAAATATCTCATTTTGCCTGGGCAAAACAATTCCTCTCCTGACATCGGATGATATAATCGTACATAATGAAGAATACCAAACAAAGTTTCACCTGGCAAATATGGACAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGGAGGACATCCTCAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATAAAGGAGTTGTAACTA CAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGGAGAAATATACCTGGCGTTCTTCAA CCTTGACTCCATGAG CAGGAAGATAA CCGCGAGAATATCAGACCTGGAAAAGGTTCTCGGGAGTACATTCATAAGAAAAGACACGTGCAGCTGC ACTGAAGTTTGGAGCGGGAGGAATTTCGGTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAAATCACATGGTTCCA TGGTGTTTGAAATTACA TGTTGAGGTATCCCATAATTCTCCTATTGCGCTTA CTGAAGCATGACA GGATGGAATAGATAAGTAGGGAAAAGAGCCTTGAGCATGTATCAGGTAAAGCTACCAAAATGAACATCCTTTAAAAG GCTGGGGTTTCA GTTTAAAATCTGGGGGTTGTGGGCTTTAAATGAGGCCTAAAAGAACAAAAAAAATTCCGGAATACGGAGCTATATATGCAACACCACTCACTAATGAAGGAACCAAATGCGAAG]
[+] EMBL CF322779 [ ACTTGCTGAGTTTCCACCAAGAGGCTGGAATTCCTATGATTCCTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGGCAGAAAAATTGCTCCCACATGGATATGAGTTTGCAGTTATTGATTACCTCTGGTACCGAAAGTATGTTCATGGGGCATACACAGATTCATATGGATTTGATAACATTGATGAGTGGGGTCGGCCATTTCCTGATCTTCAAAGATTTCCATCATCCAGAATTGATAAAGGGTTCAGTCAACTTGCGAACAAGGTGCATGGAATGGGCTTGAAATTCGGAATCCATTTAATGAAAGGGATAAGTTTACAGGCTGTGAATGGAAACACACCCATATTGGACATTAAAACGGGAAAACCCTACGTAGAGGATGGCCGGCAATGGACAGCTCGTGATATAGGTCTTACACATAGAACATGTGCATGGATGCCACATGGATTTATGAGTGTAAATACTGATATT ]
[-] EMBL CB672079 [ CTCCTGACATCGGATGATATAATCGTACATAATGAAGAATACCAAACAAAGTTTCACCTGGCAAATATGGACAGTGACGATGCTTGTTTGGATGCATGTGGCAGTCAACGGAGGACATCCTCAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGATGTGGGAGCTGAATGAGAAAGGAAACTTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATAAAGGAGTTGTAACTA CAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGGAGAAATATACTTGGCGTTCTTCAA CCTTGACTCCATGAG CAGGAAGATAA CCGCGAGAATATCAGACCTGGAAAAGGTTCTCGGGAGTACATTCATAAGAAAAGACACGTGCAGCTGC ACTGAATTTTGGAGCGGGAGGAATTTCGGTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAAATCACATGGTTCCA TGGTGTTTGAAATTACA TGTTGAGGTATCCCATAATTTTCCTATTGCGCTTA GTGAAGCATGACA GGATGGAATAGATAAGTAGGGAAAAGAGCCTTGAGCATGTATCAGGTAAAGCTACCAAAATGAACATCCTTTAAAAG GGTGGGGTTTCA GTTTAAAATTTGGGGGTTGTGGGCTTTAAATGAGGCC ]
[-] EMBL CB672081 [ TTCTCTTGGCAAATATGGACAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGGAGGATATCCTCAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATAAAGGAGTTGTAATTA CAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGGAGAAATATACCTGGCGTTTTTCAA CCTTGACTCCATGAG CAGGAAGATAA CCGCGAGAATATCAGACCTGGAAAAGGTTCTCGGGAGTACATTCATAAGAAAAGACACGTGCAGCTGC ACTGAAGTTTGGAGCGGGAGGAATTTTGGTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAAATCACATGGTTCCA TGGTGTTTGAAATTACA TGTTGAGGTATCCCATAATTCTCCTATTGCGCTTA CTGAAGCATGACA GGATGGAATAGATAAGTAGGGAAAAGAGCCTTGAGCATGTATCAGGTAAAGCTACCAAAATGAACATCCTTTAAAAG GCTGGGGTTTCA GTTTAAAATCTGGGGGTTAAGGGCTTTAAATGAGGCCTAAAAGAACAAAAAAAAataaaaaga ]
[-] EMBL CB678428 [ CTTGTCTGGATGCATTTGGCAGTCAACGGAGGACATCCTCAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGATATGCAGATGTGGGAGGTGAATGAGAAAGGAACCCTCATTAGCAGTTATTCAAGATTATGTGCCGCGGTGGAATCCAACAATAAAGGAGTTGTAACTA CAGGAGCAGTAGCCCGTGCATGGTTAGCATCTGGGAGTAAAGGAGAAATATGCCTGGGGTTTTTCAC CCTTGTCTCCATGAG CAGGAAGATAT CCGTGAGAATATCAGCCCTGGAAAAGGTTTTGGGGAGTGCATTCATAAGAAAAGACACGTGCATATCC ATTGAAGTTTGGAGCGGGAGGAATTTTGTTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAATTCACATGGTTCCA TGGTGTTTGAAATTACA TGTTGAGGTATCCCATAATTCTCGTATTGCGCTTT CTGAAGCATCCCA GGATGGAATAGATAAGTAGGGAAAAGACCCTTGAGCATGTATCAGGTAAAGCTCCCAAAAAGAACATCCTTTAAAAGTGCTGGGGTTTCAGGTTTAAAATCTGGGGGTAGGGG ]
[-] EMBL CB966276 [ ACCTCATTAGCAGTTACTCAAGATTATGTGCCCCGGTGGAATCCCACAATAAAGGAGTTGTAACTACCAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGGAGAAATATACCTGGCGTTCTTCAACCCTTGACTCCATGAGCCAGGAAGATAACCCGCGAGAATATCAGACCTGGAAAAGGTTCTCGGGAGTACATTCATAAGAAAAGACACGTGCAGCTGCAACTGAAGTTTGGACCGGGAGGAATTTCGGTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAAATCACATGGTTCCACTGGTGTTTGAAATTACACTGTTGAGGTATCCCATAATTCTCCTATGGCGCTTATCTGAAGCATGACACGGATGGAATAGATAAGTAGGGAAAAGAGCCct ]
consensusID : consensus_12238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence
[AGCCCCCCCTCGCGCACTCACGAGCCGCGGCTTCACTCACCACTCCCCAGTCGCCACGCCTCGGCCCGACGGGATGGGAAGGGGAGCCCCATCCTCCCATCCGCCGCCATGGCGCCGCCTCCTCCGCTACGCCCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCACTTCCGAGGCTAATGAACAACTTGCTGAGTTTCCACCAAGAGGCTGGAATTCCTATGATTCCTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGGCAAAAAAATTGCTCCCACATGGATATGAGTTTGCAGTTATTGATTACCTCTGGTACCGAAAGTATGTTCATGGGGCATACACAGATTCATATGGATTTGATAACATTGATGAGTGGGGTCGGCCATTTCCTGATCTTCAAAGATTTCCATCATCCAGAATTGATAAAGGGTTCAGTCAACTTGCGAACAAGGTGCATGGAATGGGCTTGAAATTCGGAATCCATTTAATGAAAGGGATAAGTTTACAGGCTGTGAATGGAAACACACCCATATTGGACATTAAAACGTGAAGGTTGATTGTATCTTCGGCACGGATTACAGCCCAAAAGAAATCATAACTATTTCAGAGAGCTTGACCGCCCCATCATCCTGTCCATCTCACCAGGAACCGAAGTGACTCCAGCATTAGCCAAAAACATCAGTCAACATGTTAACATGTACAGGATAACACGGGA]
[+] EMBL CB672080 [AGCCCCCCCTCGCGCACTCACGAGCCGCGGCTTCACTCACCACTCCCCAGTCGCCACGCCTCGGCCCGACGGGATGGGAAGGGGAGCCCCATCCTCCCATCCGCCGCCATGGCGCCGCCTCCTCCGCTACGCCCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCACTTCCGAGGCTAATGAACAACTTGCTGAGTTTCCACCAAGAGGCTGGAATTCCTATGATTCCTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGGCAAAAAAATTGCTCCCACATGGATATGAGTTTGCAGTTATTGATTACCTCTGGTACCGAAAGTATGTTCATGGGGCATACACAGATTCATATGGATTTGATAACATTGATGAGTGGGGTCGGCCATTTCCTGATCTTCAAAGATTTCCATCATCCAGAATTGATAAAGGGTTCAGTCAACTTGCGAACAAGGTGCATGGAATGGGCTTGAAATTCGGAATCCATTTAATGAAAGGGATAAGTTTACAGGCTGTGAATGGAAACACACCCATATTGGACATTAAAACGTGAAGGTTGATTGTATCTTCGGCACGGATTACAGCCCAAAAGAAATCATAACTATTTCAGAGAGCTTGACCGCCCCATCATCCTGTCCATCTCACCAGGAACCGAAGTGACTCCAGCATTAGCCAAAAACATCAGTCAACATGTTAACATGTACAGGATAACACGGGA]
[+] EMBL CB672078 [AGCCTCCCTTCGCGCACTCACGAGCCGCGGCTTCACTCACCACTCCCCAGTCGCCACGCCTCGGCCCGACGGGATGGGAAGGGGAGCCCCATCCTCCCATCCGCCGCCATGGCGCCGCCTCCTCCGCTACGCCCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCACTTCCGAGGCTAATGAACAACTTGCTGAGTGTCCACCAAGAGGCTGGAATTCCTATGATTCCTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGGCAGAAAAATTGCTCCCACATGGATATGAGTTTGCAGATATTGATTACCTCTGGTACCGAAAGTATGTTCATGGGGCATACACAAATTCATATGGATTTGATAACATTGATGAGTGGGGTCGGCCATTTCCTGATCTTCAAAGATTTCCATCATCCAGAATTGATGAAGGGTTCAGTCAACTTGCGAACGAGGAGCATGGAATGGGCTTGAAATTCGGAATCCATTTAATGAAAGGGATAAGTTTACAGGCTGTGAATGGAAACACACCCATATTGGACATTAAAACGTGAAGGTTGATTGTATCTTCAGTACGGATTACAGCCCAAAAGAAATCATAACTATTTCAGAGAGCTTGACCGCCCCATCATCCTGTCCATCTCACCAGGAACCGAAG ]
consensusID : consensus_12238#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[ATGGAGGAGATTTGAGGCATCTCGACAATGACACGTTAAGCATAATAACAAATCCTACATTACTGAAAATAAATCACTACAGCATAAATAATATGGAGGTACCCTGTATTTTATTCGTACTGATAGAGCATTTTGTAGGCGTAAATACAACACTAAGCTTGTACAAATTTCCAGTTCCATCATGTGCACAGTGAAAGGACTTCCAAAGAAGACAAGCATTCTAGTCGTTTCATATCCGAAGATCTTGTACACGTACCANAGATTGATGGTGTATCTCTTGGTCTCACTGCCTGCAGTGATGACAAAGCAAATGGATGGTATATGTTTTCACAACATGGTAAATCAGATCATATATGCAGGAACTATGGGATGCAGGATGACAAAAATATCTCATTTTGCCTGGGCAAAACAATTCCTCTCCTGACATCGGATGATATAATCGTACATAATGAAGAATACCGAAACAAGTTTCACCTGGCAAATATGGACAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGGAGGACATCCTCAGATAGCAAGTTTCCCATGGTTTCAAGGTGCAGGTGGCATGCTATGCAAATGGTGCGAGCTGAATGAGA]
[+] EMBL CA755352 [ATGGAGGAGATTTGAGGCATCTCGACAATGACACGTTAAGCATAATAACAAATCCTACATTACTGAAAATAAATCACTACAGCATAAATAATATGGAGGTACCCTGTATTTTATTCGTACTGATAGAGCATTTTGTAGGCGTAAATACAACACTAAGCTTGTACAAATTTCCAGTTCCATCATGTGCACAGTGAAAGGACTTCCAAAGAAGACAAGCATTCTAGTCGTTTCATATCCGAAGATCTTGTACACGTACCANAGATTGATGGTGTATCTCTTGGTCTCACTGCCTGCAGTGATGACAAAGCAAATGGATGGTATATGTTTTCACAACATGGTAAATCAGATCATATATGCAGGAACTATGGGATGCAGGATGACAAAAATATCTCATTTTGCCTGGGCAAAACAATTCCTCTCCTGACATCGGATGATATAATCGTACATAATGAAGAATACCGAAACAAGTTTCACCTGGCAAATATGGACAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGGAGGACATCCTCAGATAGCAAGTTTCCCATGGTTTCAAGGTGCAGGTGGCATGCTATGCAAATGGTGCGAGCTGAATGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12238#0 ------------TTGAGCCTCAGCTCGCGCACTCACGAGCCGCGGCTTCACTCACCACTC 48
consensus_12238#1 ---------------AGCCCCCCCTCGCGCACTCACGAGCCGCGGCTTCACTCACCACTC 45
consensus_12238#2 ATGGAGGAGATTTGAGGCATCTCGACAATGACACGTTAAGCATAATAACAAATCCTACAT 60
** * * ** * * * ** * **
consensus_12238#0 CCCAGTCGCCACGCCTCGGCCCGACGGGATGGGAAGGGGAGCCCCATCCTCCCATCCGCC 108
consensus_12238#1 CCCAGTCGCCACGCCTCGGCCCGACGGGATGGGAAGGGGAGCCCCATCCTCCCATCCGCC 105
consensus_12238#2 TACTGAAAATAAATCACTACAGCATAA-ATAATATGGAGGTACCCTGTATTTTATTCGTA 119
* * * * * * * ** * ** * *** * ** **
consensus_12238#0 GCCATGGCGCCGCCTCCTCCGCTACGCCCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCAC 168
consensus_12238#1 GCCATGGCGCCGCCTCCTCCGCTACGCCCTCCTCTGCGCCCTCCTCCCCCCCTGGGGCAC 165
consensus_12238#2 CTGATAGAGCATTTTGTAGGCGTAAATACAACACTAAGCTTGTACAAATTTCCAGTTCCA 179
** * ** * ** * * ** ** * * *
consensus_12238#0 TTCCGAGGCTAATGAACAACTTGCTGAGTTTCCACCAAGAGGCTGGAATTCCTATGATTC 228
consensus_12238#1 TTCCGAGGCTAATGAACAACTTGCTGAGTTTCCACCAAGAGGCTGGAATTCCTATGATTC 225
consensus_12238#2 TCATGTGCACAGTGAAA--------GGACTTCCAA-AGAAGACAAGCATTCTAGTCGTTT 230
* * * * **** * ***** * ** * * **** * **
consensus_12238#0 CTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGG-CAGAAA 287
consensus_12238#1 CTTTTCATGGATAGTTGATGAAAATACATACATGCAAAATGCGGAGATCTTGG-CAAAAA 284
consensus_12238#2 CATATC-CGAAGATCTTGTACACGTAC-CANAGATTGATGGTGTATCTCTTGGTCTCACT 288
* * ** * * * * * * *** * * * * * * ****** * *
consensus_12238#0 AATTGCTCCCACATGGATATGAGTTTGCAGTTATTGATTACCTC---TGGTA---CCGAA 341
consensus_12238#1 AATTGCTCCCACATGGATATGAGTTTGCAGTTATTGATTACCTC---TGGTA---CCGAA 338
consensus_12238#2 GCCTGCAGTGATGACAAAGCAAATGGATGGTATATGTTTTCACAACATGGTAAATCAGAT 348
*** * * * * ** ** ** * ***** * **
consensus_12238#0 AGTATGTTCATGGGGCAT---ACACAGATTCATATGGATTTGATAACATTGATGAGTGGG 398
consensus_12238#1 AGTATGTTCATGGGGCAT---ACACAGATTCATATGGATTTGATAACATTGATGAGTGGG 395
consensus_12238#2 CATATATGCAGGAACTATGGGATGCAGGATGACAAAAATATCTCATTTTGCCTGGGCAAA 408
*** * ** * ** * *** * * * ** * * * ** *
consensus_12238#0 GTCGGCCATTTCCTGATCTTCAAAGATTTC------CATCATCCAGAAT--TGATAAAGG 450
consensus_12238#1 GTCGGCCATTTCCTGATCTTCAAAGATTTC------CATCATCCAGAAT--TGATAAAGG 447
consensus_12238#2 ACAATTCCTCTCCTGACATCGGATGATATAATCGTACATAATGAAGAATACCGAAACAAG 468
* * ****** * * *** * *** ** ***** ** * * *
consensus_12238#0 GTTCAGTCAACT--TGCGAACAA----GGTGCATG---GAATGGGCTTGAAATTC---GG 498
consensus_12238#1 GTTCAGTCAACT--TGCGAACAA----GGTGCATG---GAATGGGCTTGAAATTC---GG 495
consensus_12238#2 TTTCACCTGGCAAATATGGACAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGG 528
**** * * * *** * *** ** * *** ** * ** **
consensus_12238#0 AATCCATTTAATGAAAGGGA------TAAGTTTACAGGCTGTGAATGGAAACACACCCAT 552
consensus_12238#1 AATCCATTTAATGAAAGGGA------TAAGTTTACAGGCTGTGAATGGAAACACACCCAT 549
consensus_12238#2 AGGACATCCTCAGATAGCAAGTTTCCCATGGTTTCAAGGTGCAGGTGGCATGCTATGCAA 588
* *** ** ** * * * ** ** * ** *** * * **
consensus_12238#0 ATTGGAC-ATTAAAACGGGAAAACCCTACGTAGAGGATGGCCGGCAATGGACAGCTCGTG 611
consensus_12238#1 ATTGGAC-ATTAAAACG------------------------------------------- 565
consensus_12238#2 ATGGTGCGAGCTGAATGAGA---------------------------------------- 608
** * * * ** *
consensus_12238#0 ATATAGGTCTTACACATAGAACATGTGCATGGATGCCACATGGATTTATGAGTGTAAATA 671
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 CTGATATTGGAGCTGGAAAGGCCTTCCTAAGATCTCTTTATCAACAGTACGCTGATTGGG 731
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 GTGTTGATTTTGTGAAGGTTGATTGTATCTTCGGTACGGATTACAGCCCAAAAGAAATCA 791
consensus_12238#1 ------------TGAAGGTTGATTGTATCTTCGGCACGGATTACAGCCCAAAAGAAATCA 613
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 TAACTATTTCAGAGCTCTTGGCAGAGCTTGACCGCCCCATCATCCTGTCCATCTCACCAG 851
consensus_12238#1 TAACTATTTCAGAG----------AGCTTGACCGCCCCATCATCCTGTCCATCTCACCAG 663
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 GAACCGAAGTGACTCCAGCATTAGCCAAAAACATCAGTCAACATGTTAACATGTACAGGA 911
consensus_12238#1 GAACCGAAGTGACTCCAGCATTAGCCAAAAACATCAGTCAACATGTTAACATGTACAGGA 723
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 TAACAGGGGATGATTGGGACAACTGGAAGGATGTTAGTTCACATTTTGACGTGTCTAGTT 971
consensus_12238#1 TAACACGGGA-------------------------------------------------- 733
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 CCTTTGCTGCTGCAAATAAAATTGGGGCCATAGGATTACGAGGAAGATCTTGGCCAGATT 1031
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 TAGACATGCTCCCATTTGGCTGGCTTACAAATGCAGGTGTCAATCAGGGTCCACATAGGC 1091
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 AATGTGAACTTACATCTGATGAACAGAGAACACAGATAGCACTTTGGTCAATGGCTAAGT 1151
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 CTCCTCTAATGTATGGAGGAGATTTGAGGCATCTCGACAATGACACGTTAAGCATAATAA 1211
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 CAAATCCTACATTACTGAAAATAAATCACTACAGCATAAATAATATGGAGTTCCATCATG 1271
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 TGCACAGTGAAAGGACTTCCAAAGAAGACAAGCATTCTAGTCGTTTCATATCCGAAGATC 1331
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 TTGTACACGTACCAAAGATTGATGGTGTATCTCTTGGTCTCACTGCCTGCAGTGATGACA 1391
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 AAGCAAATGGATGGTATATGTTTTCACAACATGGTAAATCAGATCATATATGCAGGAACT 1451
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 ATGGGATGCAGGATGACAAAAATATCTCATTTTGCCTGGGCAAAACAATTCCTCTCCTGA 1511
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 CATCGGATGATATAATCGTACATAATGAAGAATACCAAACAAAGTTTCACCTGGCAAATA 1571
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 TGGACAGTGACGATGCTTGTCTGGATGCATCTGGCAGTCAACGGAGGACATCCTCAGATA 1631
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 GCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGATGTGGGAGCTGAATG 1691
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 AGAAAGGAAACCTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATA 1751
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 AAGGAGTTGTAACTACAGGAGCAGTAGCACGTGCATGGATAGCAACTGGGAGTAAAGGAG 1811
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 AAATATACCTGGCGTTCTTCAACCTTGACTCCATGAGCAGGAAGATAACCGCGAGAATAT 1871
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 CAGACCTGGAAAAGGTTCTCGGGAGTACATTCATAAGAAAAGACACGTGCAGCTGCACTG 1931
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 AAGTTTGGAGCGGGAGGAATTTCGGTCGTGTGGAGGAAGAGATTTCAGCGGTAGTTAAAT 1991
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 CACATGGTTCCATGGTGTTTGAAATTACATGTTGAGGTATCCCATAATTCTCCTATTGCG 2051
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 CTTACTGAAGCATGACAGGATGGAATAGATAAGTAGGGAAAAGAGCCTTGAGCATGTATC 2111
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 AGGTAAAGCTACCAAAATGAACATCCTTTAAAAGGCTGGGGTTTCAGTTTAAAATCTGGG 2171
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 GGTTGTGGGCTTTAAATGAGGCCTAAAAGAACAAAAAAAATTCCGGAATACGGAGCTATA 2231
consensus_12238#1 ------------------------------------------------------------
consensus_12238#2 ------------------------------------------------------------
consensus_12238#0 TATGCAACACCACTCACTAATGAAGGAACCAAATGCGAAG 2271
consensus_12238#1 ----------------------------------------
consensus_12238#2 ----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||