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Oryza sativa
cluster # 12245 cluster # 12245       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12245#0 length = 1214 sequences # 2  
consensus_12245#1 length = 989 sequences # 7  
consensus_12245#2 length = 546 sequences # 1  

consensusID : consensus_12245#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1214
fasta sequence
                              [CCAAAGCAGCAATTGCAAGAAGCAAAATCTCTTCTCCTCCTCCTCCTCCTCCTCATCATCATCCTCCTCTCGCCCTTCGACAACGCACCATAGTTTAACCCAAGCTAGAAGAAGAAGACGATAGATATGAGCACTACTCGCGGCGTCTCCTCCTCTTCTGCTGCTGCTGCTCTTGCGCTGCTTCTCCTCTTCGCCCTCTGCTTCTTCTCCTTCCACTTCGCCGCAGCTGCTCGCGCCGTTCCTCGTGATGAACACCAAGGTAGCTAGCTACAGCACTTGGATTATTGATTGTTCAATTGATAGTGTATGCAAATTAGCTGACGTTTTGGAGCTTTTCTTTTCAGAGAATGGCGGTGTCAAGGCAGTAGCAGCAGTTGCAGCTGATCAGCTTGTGCTCCAGCTGGAAGGTGACACCGGCAATGGCGACGAGGTCTCCGAGGTGAGAATCGATGGAAATATACAGAGCTATAAATCTTCGAGTACCTAGCTGATTAGACAAGAATTGATGAAGAAGCAATTAGTGGTAACTAATCTTGATTGTTAATTTATTTCTATCTTGTTCTTGGTCAGTTGATGGGAGCAGCTGAGGAGGAAGCAGCAGCATGCGAGGAGGGGAAGAACAACGACGAGTGCGTGCAGAGGAGGCTGCTCAGCGACGCCCACCTCGACTACATCTACACGCAGCACAAGAACAAGCCTTGATCGATCGATCCATCCATCCAACTACACGCTGAAATCCAAAGCTAATACAAGGAAGATCGAGATCGAGATAAATTAACCAACTCTATATGCATATCTATCTATCCATCTACCTCTGCATGCTGTTTTCACTGCATCGATCGCTACTGTTCTGCAGTGCCAATCACTGTCCGTTTCTGTACAATCTGTGATACTACTAGCTAGTAGCAGTACATGGCATCGTTTTCCTTCAAGTGTTCGTTGGCTTTTACTTAGTCCGGTGAGTGCTTGTGGGTTATTTCTGACGAGGGAGTGTGATCAGTACGCGTACTAATGGTATTTTGGTTTGTCATGGCATGATGAAATTAAGCTGTGGTAGCAATATAATGCATATATATATTACCTTTGTCTCATGTCCTTAGTATGTAGTAGTGGTAAATAGTACATAGCATGAATAATATACTTATCAAGGAACACTTGTGTTTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK073352             [CCAAAGCAGCAATTGCAAGAAGCAAAATCTCTTCTCCTCCTCCTCCTCCTCCTCATCATCATCCTCCTCTCGCCCTTCGACAACGCACCATAGTTTAACCCAAGCTAGAAGAAGAAGACGATAGATATGAGCACTACTCGCGGCGTCTCCTCCTCTTCTGCTGCTGCTGCTCTTGCGCTGCTTCTCCTCTTCGCCCTCTGCTTCTTCTCCTTCCACTTCGCCGCAGCTGCTCGCGCCGTTCCTCGTGATGAACACCAAGGTAGCTAGCTACAGCACTTGGATTATTGATTGTTCAATTGATAGTGTATGCAAATTAGCTGACGTTTTGGAGCTTTTCTTTTCAGAGAATGGCGGTGTCAAGGCAGTAGCAGCAGTTGCAGCTGATCAGCTTGTGCTCCAGCTGGAAGGTGACACCGGCAATGGCGACGAGGTCTCCGAGGTGAGAATCGATGGAAATATACAGAGCTATAAATCTTCGAGTACCTAGCTGATTAGACAAGAATTGATGAAGAAGCAATTAGTGGTAACTAATCTTGATTGTTAATTTATTTCTATCTTGTTCTTGGTCAGTTGATGGGAGCAGCTGAGGAGGAAGCAGCAGCATGCGAGGAGGGGAAGAACAACGACGAGTGCGTGCAGAGGAGGCTGCTCAGCGACGCCCACCTCGACTACATCTACACGCAGCACAAGAACAAGCCTTGATCGATCGATCCATCCATCCAACTACACGCTGAAATCCAAAGCTAATACAAGGAAGATCGAGATCGAGATAAATTAACCAACTCTATATGCATATCTATCTATCCATCTACCTCTGCATGCTGTTTTCACTGCATCGATCGCTACTGTTCTGCAGTGCCAATCACTGTCCGTTTCTGTACAATCTGTGATACTACTAGCTAGTAGCAGTACATGGCATCGTTTTCCTTCAAGTGTTCGTTGGCTTTTACTTAGTCCGGTGAGTGCTTGTGGGTTATTTCTGACGAGGGAGTGTGATCAGTACGCGTACTAATGGTATTTTGGTTTGTCATGGCATGATGAAATTAAGCTGTGGTAGCAATATA                                                                                                                                                      ]
[+] EMBL AU091913             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CGAGATAAATTAACCAACTCTATATGCATATCTATCTATCCATCTACCTCTGCATGCTGTTTTCACTGCATCGATCGCTACTGTTCTGCAGTGCCAATCACTGTCCGTTTCTGTACAATCTGTGATACTACTAGCTAGTAGCAGTACATGGCATCGTTTTCCTTCAAGTGTTCGTTGGCTTTTACTTAGTCCGGTGAGTGCTTGTGGGTTATTTCTGACGAGGGAGTGTGATCAGTACGCGTACTAATGGTATTTTGGTTTGTCATGGCATGATGAAATTAAGCTGTGGTAGCAATATAATGCATATATATATTACCTTTGTCTCATGTCCTTAGTATGTAGTAGTGGTAAATAGTACATAGCATGAATAATATACTTATCAAGGAACACTTGTGTTTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_12245#0 CCAAAGCAGCAATTGCAAGAAGCAAAATCTCTTCTCCTCCTCCTCCTCCTCCTCATCATC ATCCTCCTCTCGCCCTTCGACAACGCACCATAGTTTAACCCAAGCTAGAAGAAGAAGACG ATAGATATGAGCACTACTCGCGGCGTCTCCTCCTCTTCTGCTGCTGCTGCTCTTGCGCTG CTTCTCCTCTTCGCCCTCTGCTTCTTCTCCTTCCACTTCGCCGCAGCTGCTCGCGCCGTT CCTCGTGATGAACACCAAGGTAGCTAGCTACAGCACTTGGATTATTGATTGTTCAATTGA TAGTGTATGCAAATTAGCTGACGTTTTGGAGCTTTTCTTTTCAGAGAATGGCGGTGTCAA GGCAGTAGCAGCAGTTGCAGCTGATCAGCTTGTGCTCCAGCTGGAAGGTGACACCGGCAA TGGCGACGAGGTCTCCGAGGTGAGAATCGATGGAAATATACAGAGCTATAAATCTTCGAG TACCTAGCTGATTAGACAAGAATTGATGAAGAAGCAATTAGTGGTAACTAATCTTGATTG TTAATTTATTTCTATCTTGTTCTTGGTCAGTTGATGGGAGCAGCTGAGGAGGAAGCAGCA GCATGCGAGGAGGGGAAGAACAACGACGAGTGCGTGCAGAGGAGGCTGCTCAGCGACGCC CACCTCGACTACATCTACACGCAGCACAAGAACAAGCCTTGATCGATCGATCCATCCATC CAACTACACGCTGAAATCCAAAGCTAATACAAGGAAGATCGAGATCGAGATAAATTAACC AACTCTATATGCATATCTATCTATCCATCTACCTCTGCATGCTGTTTTCACTGCATCGAT CGCTACTGTTCTGCAGTGCCAATCACTGTCCGTTTCTGTACAATCTGTGATACTACTAGC TAGTAGCAGTACATGGCATCGTTTTCCTTCAAGTGTTCGTTGGCTTTTACTTAGTCCGGT GAGTGCTTGTGGGTTATTTCTGACGAGGGAGTGTGATCAGTACGCGTACTAATGGTATTT TGGTTTGTCATGGCATGATGAAATTAAGCTGTGGTAGCAATATAATGCATATATATATTA CCTTTGTCTCATGTCCTTAGTATGTAGTAGTGGTAAATAGTACATAGCATGAATAATATA CTTATCAAGGAACACTTGTGTTTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAA



consensusID : consensus_12245#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 989
fasta sequence
                              [AACCCAAAGCAGCAATTGCAAGAAGCAAAATCTCTTCTCCTCCTCCTCCTCCTCCTCATCATCATCCTCCTCTCGCCCTTCGACAACGCACCATAGTTTAACCCAAGCTAGAAGAAGAAGACGATAGATATGAGCACTACTCGCGGCGTCTCCTCCTCTTCTGCTGCTGCTGCTCTTGCGCTGCTTCTCCTCTTCGCCCTCTGCTTCTTCTCCTTCCACTTCGCCGCAGCTGCTCGCGCCGTTCCTCGTGATGAACACCAAGAGAATGGCGGTGTCAAGGCAGTAGCAGCAGTTGCAGCTGATCAGCTTGTGCTCCAGCTGGAAGGTGACACCGGCAATGGCGACGAGGTCTCCGAGTTGATGGGAGCAGCTGAGGAGGAAGCAGCAGCATGCGAGGAGGGGAAGAACAACGACGAGTGCGTGCAGAGGAGGCTGCTCAGCGACGCCCACCTCGACTACATCTACACGCAGCACAAGAACAAGCCTTGATCGATCG--------ATCCATCCATCCAACTACACGCTGAAATCCAAAGCTAATACAAGGAAGATCGAGATCGAGATAAATTAACCAACTCTATATGCATATCTATCTATCCATCTACCTCTGCATGCTGTTTTCACTGCATCGATCGCTACTGTTCTGCAGTGCCAATCACTGTCCGTTTCTGTACAATCTGTGATACTACTAGCTAGTAGCAGTACATGGCATCGTTTTCCTTCAAGTGTTCGTT-GGCTTTTACTTA-GTCCGGTGAGTGCTTGT-GGGTTATTTCTGACGA-GGGAGTGTGATCAGTA-CGCGTACTAATGGTATTTTGGTTTGTCATGGCATGATGAAATTAAGCTGTGGTAGCAATATAATGCATATATATATTACCTTTGTCTCATGTCCTTAGTATGTAGTAGTGGTAAATAGTACATAGCATGAATAATATACTTATCAAGGAACACTTGTGTTTTGTTTAATGGCGCATGTCTGTCTTCCTGTCTGTAAAAAA]

[+] EMBL CF276311             [AACCCAAAGCAGCAATTGCAAGAAGCAAAATCTCTTCTCCTCCTCCTCCTCCTCCTCATCATCATCCTCCTCTCGCCCTTCGACAACGCACCATAGTTTAACCCAAGCTAGAAGAAGAAGACGATAGATATGAGCACTACTCGCGGCGTCTCCTCCTCTTCTGCTGCTGCTGCTCTTGCGCTGCTTCTCCTCTTCGCCCTCTGCTTCTTCTCCTTCCACTTCGCCGCAGCTGCTCGCGCCGTTCCTCGTGATGAACACCAAGAGAATGGCGGTGTCAAGGCAGTAGCAGCTGTTGCAGCTGATCAGCTTGTGCTCCAGCTGGAAGGTGACACCGGCAATGGCGACGAGGTCTCCGAGTTGATGGGAGCAGCTGAGGAGGAAGCAGCAGCATGCGAGGAGGGGAAGAACAACGACGAGTGCGTGCAGAGGAGGCTGCTCAGCGACGCCCACCTCGACTACATCTACACGCAGCACAAGAACAAGCCTTGATCGATCG        ATCCATCCATCCAACTACACGCTGAAATCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CF277532             [   CCAAAGCAGCAATTGCAAGAAGCAAAATCTCTTCTCCTCCTCCTCCTCCTCCTCATCATCATCCTCCTCTCGCCCTTCGACAACGCACCATAGTTTAACCCAAGCTAGAAGAAGAAGACGATAGATATGAGCACTACTCGCGGCGTCTCCTCCTCTTCTGCTGCTGCTGCTCTTGCGCTGCTTCTCCTCTTCGCCCTCTGCTTCTTCTCCTTCCACTTCGCCGCAGCTGCTCGCGCCGTTCCTCGTGATGAACACCAAGAGAATGGCGGTGTCAAGGCAGTAGCAGCAGTTGCAGCTGATCAGCTTGTGCTCCAGCTGGAAGGTGACACCGGCAATGGCGACGAGGTCTCCGAGTTGATGGGAGCAGCTGAGGAGGAAGCAGCAGCATGCGAGGAGGGGAAGAACAACGACGAGTGCGTGCAGAGGAGGCTGCTCAGCGACGCCCACCTCGACTACATCTACACGCAGCACAAGAACAAGCCTTGATCGATCG        ATCCATCCATCCAACTACACGCTGAAATCCAAAGCTAATACAAGGAAGATCGAGATCGAGATAAATTAACCAACTCTATATGCATATCTATCTATCCATCTACCTCTGCATGCTGTTTTCACTGCATC                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK063900             [    CAAAGCAGCAATTGCAAGAAGCAAAATCTCTTCTCCTCCTCCTCCTCCTCCTCATCATCATCCTCCTCTCGCCCTTCGACAACGCACCATAGTTTAACCCAAGCTAGAAGAAGAAGACGATAGATATGAGCACTACTCGCGGCGTCTCCTCCTCTTCTGCTGCTGCTGCTCTTGCGCTGCTTCTCCTCTTCGCCCTCTGCTTCTTCTCCTTCCACTTCGCCGCAGCTGCTCGCGCCGTTCCTCGTGATGAACACCAAGAGAATGGCGGTGTCAAGGCAGTAGCAGCAGTTGCAGCTGATCAGCTTGTGCTCCAGCTGGAAGGTGACACCGGCAATGGCGACGAGGTCTCCGAGTTGATGGGAGCAGCTGAGGAGGAAGCAGCAGCATGCGAGGAGGGGAAGAACAACGACGAGTGCGTGCAGAGGAGGCTGCTCAGCGACGCCCACCTCGACTACATCTACACGCAGCACAAGAACAAGCCTTGATCGATCG        ATCCATCCATCCAACTACACGCTGAAATCCAAAGCTAATACAAGGAAGATCGAGATCGAGATAAATTAACCAACTCTATATGCATATCTATCTATCCATCTACCTCTGCATGCTGTTTTCACTGCATCGATCGCTACTGTTCTGCAGTGCCAATCACTGTCCGTTTCTGTACAATCTGTGATACTACTAGCTAGTAGCAGTACATGGCATCGTTTTCCTTCAAGTGTTCGTT GGCTTTTACTTA GTCCGGTGAGTGCTTGT GGGTTATTTCTGACGA GGGAGTGTGATCAGTA CGCGTACTAATGGTATTTTGGTTTGTCATGGCATGATGAAATTAAGCTGTGGTAGCAATATA                                                                                                                                          ]
[+] EMBL OSS4189A             [             AATTGCAAGAAGCAAAATCTCTTCTCCTCCTCCTCCTCCTCCTCATCATCATCCTCCTCTCGCCCTTCGACAACGCACCATAGTTTAACCCAAGCTAGAAGAAGAAGACGATAGATATGAGCACTACTCGCGGCGTCTCCTCCTCTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSA276692            [                                TCTTCTCCTCCTCCTCCTCCTCCTCATCATCATCCTCCTCTCGCCCTTCGACAACGCACCATAGTTTAACCCAAGCTAGAAGAAGAAGACGATAGATATGAGCACTACTCGCGGCGTCTCCTCCTCTTCTGCTGCTGCTGCTCTTGCGCTGCTTCTCCTCTTCGCCCTCTGCTTCTTCTCCTTCCACTTCGCCGCAGCTGCTCGCGCCGTTCCTCGTGATGAACACCAAGAGAATGGCGGTGTCAAGGCAGTAGCAGCAGTTGCAGCTGATCAGCTTGTGCTCCAGCTGGAAGGTGACACCGGCAATGGCGACGAGGTCTCCGAGTTGATGGGAGCAGCTGAGGAGGAAGCAGCAGCATGCGAGGAGGGGAAGAACAACGACGAGTGCGTGCAGAGGAGGCTGCTCAGCGACGCCCACCTCGACTACATCTACACGCAGCACAAGAACAAGCCTTGATCGATCGATCCATCCATCCATCCATCCAACTACACGCTGAAATCCAAAGCTAATACAAGGAAGATCGAGATCGAGATAAATTAACCAACTCTATATGCATATCTATCTATCCATCTACCTCTGCATGCTGTTTTTACTGCATCGATCGCTACTGTTCTGCAGTGCCAATCACTGTCCGTTTCTGTACAATCTGTGATACTACTAGCTAGTAGCAGTACATGGCATCGTTTTCCTTCAAGTGTTCGTTGGGCTTTTACTTAGGTCCGGTGAGTGCTTGTGGGGTTATTTCTGACGAGGGGAGTGTGATCAGTACCGCGTA                                                                                                                                                                                                  ]
[+] EMBL C73667               [                                                                                                                                                                                                                                                                                                                                                                         TGGGAGCAGCTGAGGAGGAAGCAGCAGCATGCGNGGAGGGGAAGAACAACGACGAGTGCGTGCAGAGGAGGCTGCTCAGCGACGCCCACCTCGACTACATCTACACGCAGCACAAGAACAAGCCTTGATCGATCG        ATCCATCCATCCAACTACACGCTGAAATCCAAAGCTAATACAAGGAAGATCGAGATCGAGATAAATTAACCAACTCTATATGCATATCTATCTATCCATCTACCTCTGCATGCTGTTTTCACTGCATCGATCGCTACTGTTCTGCAGTGCCAATCACTGTCCGTTTCTGTACAATCTGTGATACTACTAGCTAGTAGCAGTACATGGCATCGTTTTCCTTCAAGTGTTCGTTGGGCTTTTACTTAGGTCCGGTGAGTGCTTGTGGGGTTATTTCTGACGAGGGGAGTGTGATCAGTACCGCGTA                                                                                                                                                                                                  ]
[-] EMBL CF277533             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GAGATCGAGATAAATTAACCAACTCTATATGCATATCTATCTATCCATCTACCTCTGCATGCTGTTTTCACTGCATCGATCGCTACTGTTCTGCAGTGCCAATCACTGTCCGTTTCTGTACAATCTGTGATACTACTAGCTAGTAGCAGTACGTGGCATCGTTTTCCTTCAAGTGTTCGTT GGCTTTTACTTA GTCCGGTGAGTGCTTGT GGGTTATTTCTGACGA GGGAGTGTGATCAGTA CGCGTACTAATGGTATTTTGGTTTGTCATGGCATGATGAAATTAAGCTGTGGTAACAATATAATGCATATATATATTACCTTTGTCTCATGTCCTTAGTATGTAGTAGTGGTAAATAGTACATAGCATGAATAATATACTTATCAAGGAACACTTGTGTTTTGTTTAATGGCGCATGTCTGTCTTCCTGTCTGTAAAAAA]


>consensus_12245#1 AACCCAAAGCAGCAATTGCAAGAAGCAAAATCTCTTCTCCTCCTCCTCCTCCTCCTCATC ATCATCCTCCTCTCGCCCTTCGACAACGCACCATAGTTTAACCCAAGCTAGAAGAAGAAG ACGATAGATATGAGCACTACTCGCGGCGTCTCCTCCTCTTCTGCTGCTGCTGCTCTTGCG CTGCTTCTCCTCTTCGCCCTCTGCTTCTTCTCCTTCCACTTCGCCGCAGCTGCTCGCGCC GTTCCTCGTGATGAACACCAAGAGAATGGCGGTGTCAAGGCAGTAGCAGCAGTTGCAGCT GATCAGCTTGTGCTCCAGCTGGAAGGTGACACCGGCAATGGCGACGAGGTCTCCGAGTTG ATGGGAGCAGCTGAGGAGGAAGCAGCAGCATGCGAGGAGGGGAAGAACAACGACGAGTGC GTGCAGAGGAGGCTGCTCAGCGACGCCCACCTCGACTACATCTACACGCAGCACAAGAAC AAGCCTTGATCGATCGATCCATCCATCCAACTACACGCTGAAATCCAAAGCTAATACAAG GAAGATCGAGATCGAGATAAATTAACCAACTCTATATGCATATCTATCTATCCATCTACC TCTGCATGCTGTTTTCACTGCATCGATCGCTACTGTTCTGCAGTGCCAATCACTGTCCGT TTCTGTACAATCTGTGATACTACTAGCTAGTAGCAGTACATGGCATCGTTTTCCTTCAAG TGTTCGTTGGCTTTTACTTAGTCCGGTGAGTGCTTGTGGGTTATTTCTGACGAGGGAGTG TGATCAGTACGCGTACTAATGGTATTTTGGTTTGTCATGGCATGATGAAATTAAGCTGTG GTAGCAATATAATGCATATATATATTACCTTTGTCTCATGTCCTTAGTATGTAGTAGTGG TAAATAGTACATAGCATGAATAATATACTTATCAAGGAACACTTGTGTTTTGTTTAATGG CGCATGTCTGTCTTCCTGTCTGTAAAAAA



consensusID : consensus_12245#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence
                              [AGAACAAGCCTTGATCGATCGATCCATCCATCCAACTACACGCTGAAATCCAAAGCTAATACAAGGAAGATCGAGATCGAGATAAATTAACCAACTCTATATGCATATCTATCTATCCATCTACCTTTGCATGCTGTTTTCACTGCATCGATCGCTACTGTTTTGCAGTGCCAATCACTGTCCGTTTTTGTACAATCTGTGATACTACTAGCTAGTAGCAGTACATGGCATCGTTTTCCTTCAAGTGTTCGTTGGCTTTTACTTAGTCCGGTGAGTGCTTGTGGGTTATTTTTGACGAGGGAGTGTGATCAGTACGCGTACTAATGGTATTTTGGTTTGTCATGGCATGATGAAATTAAGCTGTGGTAGCAATATAATGCATATATATATTACCTTTGTCTCATGTCCTTAGTATGTAGTAGTGGTAAATAGTACATAGCATGAATAATATACTTATCAAGGAACACTTGTGTTTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAATCATGCCGTTACGTAGCGTATCGTTGACAG]

[-] EMBL CF276312             [AGAACAAGCCTTGATCGATCGATCCATCCATCCAACTACACGCTGAAATCCAAAGCTAATACAAGGAAGATCGAGATCGAGATAAATTAACCAACTCTATATGCATATCTATCTATCCATCTACCTTTGCATGCTGTTTTCACTGCATCGATCGCTACTGTTTTGCAGTGCCAATCACTGTCCGTTTTTGTACAATCTGTGATACTACTAGCTAGTAGCAGTACATGGCATCGTTTTCCTTCAAGTGTTCGTTGGCTTTTACTTAGTCCGGTGAGTGCTTGTGGGTTATTTTTGACGAGGGAGTGTGATCAGTACGCGTACTAATGGTATTTTGGTTTGTCATGGCATGATGAAATTAAGCTGTGGTAGCAATATAATGCATATATATATTACCTTTGTCTCATGTCCTTAGTATGTAGTAGTGGTAAATAGTACATAGCATGAATAATATACTTATCAAGGAACACTTGTGTTTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAATCATGCCGTTACGTAGCGTATCGTTGACAG]


>consensus_12245#2 AGAACAAGCCTTGATCGATCGATCCATCCATCCAACTACACGCTGAAATCCAAAGCTAAT ACAAGGAAGATCGAGATCGAGATAAATTAACCAACTCTATATGCATATCTATCTATCCAT CTACCTTTGCATGCTGTTTTCACTGCATCGATCGCTACTGTTTTGCAGTGCCAATCACTG TCCGTTTTTGTACAATCTGTGATACTACTAGCTAGTAGCAGTACATGGCATCGTTTTCCT TCAAGTGTTCGTTGGCTTTTACTTAGTCCGGTGAGTGCTTGTGGGTTATTTTTGACGAGG GAGTGTGATCAGTACGCGTACTAATGGTATTTTGGTTTGTCATGGCATGATGAAATTAAG CTGTGGTAGCAATATAATGCATATATATATTACCTTTGTCTCATGTCCTTAGTATGTAGT AGTGGTAAATAGTACATAGCATGAATAATATACTTATCAAGGAACACTTGTGTTTTGTTT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAATCATGCCGTTACGTAGCGTATCGT TGACAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12245#0      ---CCAAAGCAGCAATTGCAAGAAGCAAAATCTCTTCTCCTCCTCCTCCTCCTCCTCATC 57
consensus_12245#1      AACCCAAAGCAGCAATTGCAAGAAGCAAAATCTCTTCTCCTCCTCCTCCTCCTCCTCATC 60
consensus_12245#2      ------------------------------------------------------------
                                                                                   

consensus_12245#0      ATCATCCTCCTCTCGCCCTTCGACAACGCACCATAGTTTAACCCAAGCTAGAAGAAGAAG 117
consensus_12245#1      ATCATCCTCCTCTCGCCCTTCGACAACGCACCATAGTTTAACCCAAGCTAGAAGAAGAAG 120
consensus_12245#2      ------------------------------------------------------------
                                                                                   

consensus_12245#0      ACGATAGATATGAGCACTACTCGCGGCGTCTCCTCCTCTTCTGCTGCTGCTGCTCTTGCG 177
consensus_12245#1      ACGATAGATATGAGCACTACTCGCGGCGTCTCCTCCTCTTCTGCTGCTGCTGCTCTTGCG 180
consensus_12245#2      ------------------------------------------------------------
                                                                                   

consensus_12245#0      CTGCTTCTCCTCTTCGCCCTCTGCTTCTTCTCCTTCCACTTCGCCGCAGCTGCTCGCGCC 237
consensus_12245#1      CTGCTTCTCCTCTTCGCCCTCTGCTTCTTCTCCTTCCACTTCGCCGCAGCTGCTCGCGCC 240
consensus_12245#2      ------------------------------------------------------------
                                                                                   

consensus_12245#0      GTTCCTCGTGATGAACACCAAGGTAGCTAGCTACAGCACTTGGATTATTGATTGTTCAAT 297
consensus_12245#1      GTTCCTCGTGATGAACACCAAG-------------------------------------- 262
consensus_12245#2      ------------------------------------------------------------
                                                                                   

consensus_12245#0      TGATAGTGTATGCAAATTAGCTGACGTTTTGGAGCTTTTCTTTTCAGAGAATGGCGGTGT 357
consensus_12245#1      -----------------------------------------------AGAATGGCGGTGT 275
consensus_12245#2      ------------------------------------------------------------
                                                                                   

consensus_12245#0      CAAGGCAGTAGCAGCAGTTGCAGCTGATCAGCTTGTGCTCCAGCTGGAAGGTGACACCGG 417
consensus_12245#1      CAAGGCAGTAGCAGCAGTTGCAGCTGATCAGCTTGTGCTCCAGCTGGAAGGTGACACCGG 335
consensus_12245#2      ------------------------------------------------------------
                                                                                   

consensus_12245#0      CAATGGCGACGAGGTCTCCGAGGTGAGAATCGATGGAAATATACAGAGCTATAAATCTTC 477
consensus_12245#1      CAATGGCGACGAGGTCTCCGAG-------------------------------------- 357
consensus_12245#2      ------------------------------------------------------------
                                                                                   

consensus_12245#0      GAGTACCTAGCTGATTAGACAAGAATTGATGAAGAAGCAATTAGTGGTAACTAATCTTGA 537
consensus_12245#1      ------------------------------------------------------------
consensus_12245#2      ------------------------------------------------------------
                                                                                   

consensus_12245#0      TTGTTAATTTATTTCTATCTTGTTCTTGGTCAGTTGATGGGAGCAGCTGAGGAGGAAGCA 597
consensus_12245#1      ---------------------------------TTGATGGGAGCAGCTGAGGAGGAAGCA 384
consensus_12245#2      ------------------------------------------------------------
                                                                                   

consensus_12245#0      GCAGCATGCGAGGAGGGGAAGAACAACGACGAGTGCGTGCAGAGGAGGCTGCTCAGCGAC 657
consensus_12245#1      GCAGCATGCGAGGAGGGGAAGAACAACGACGAGTGCGTGCAGAGGAGGCTGCTCAGCGAC 444
consensus_12245#2      ------------------------------------------------------------
                                                                                   

consensus_12245#0      GCCCACCTCGACTACATCTACACGCAGCACAAGAACAAGCCTTGATCGATCGATCCATCC 717
consensus_12245#1      GCCCACCTCGACTACATCTACACGCAGCACAAGAACAAGCCTTGATCGATCGATCCATCC 504
consensus_12245#2      -------------------------------AGAACAAGCCTTGATCGATCGATCCATCC 29
                                                      *****************************

consensus_12245#0      ATCCAACTACACGCTGAAATCCAAAGCTAATACAAGGAAGATCGAGATCGAGATAAATTA 777
consensus_12245#1      ATCCAACTACACGCTGAAATCCAAAGCTAATACAAGGAAGATCGAGATCGAGATAAATTA 564
consensus_12245#2      ATCCAACTACACGCTGAAATCCAAAGCTAATACAAGGAAGATCGAGATCGAGATAAATTA 89
                       ************************************************************

consensus_12245#0      ACCAACTCTATATGCATATCTATCTATCCATCTACCTCTGCATGCTGTTTTCACTGCATC 837
consensus_12245#1      ACCAACTCTATATGCATATCTATCTATCCATCTACCTCTGCATGCTGTTTTCACTGCATC 624
consensus_12245#2      ACCAACTCTATATGCATATCTATCTATCCATCTACCTTTGCATGCTGTTTTCACTGCATC 149
                       ************************************* **********************

consensus_12245#0      GATCGCTACTGTTCTGCAGTGCCAATCACTGTCCGTTTCTGTACAATCTGTGATACTACT 897
consensus_12245#1      GATCGCTACTGTTCTGCAGTGCCAATCACTGTCCGTTTCTGTACAATCTGTGATACTACT 684
consensus_12245#2      GATCGCTACTGTTTTGCAGTGCCAATCACTGTCCGTTTTTGTACAATCTGTGATACTACT 209
                       ************* ************************ *********************

consensus_12245#0      AGCTAGTAGCAGTACATGGCATCGTTTTCCTTCAAGTGTTCGTTGGCTTTTACTTAGTCC 957
consensus_12245#1      AGCTAGTAGCAGTACATGGCATCGTTTTCCTTCAAGTGTTCGTTGGCTTTTACTTAGTCC 744
consensus_12245#2      AGCTAGTAGCAGTACATGGCATCGTTTTCCTTCAAGTGTTCGTTGGCTTTTACTTAGTCC 269
                       ************************************************************

consensus_12245#0      GGTGAGTGCTTGTGGGTTATTTCTGACGAGGGAGTGTGATCAGTACGCGTACTAATGGTA 1017
consensus_12245#1      GGTGAGTGCTTGTGGGTTATTTCTGACGAGGGAGTGTGATCAGTACGCGTACTAATGGTA 804
consensus_12245#2      GGTGAGTGCTTGTGGGTTATTTTTGACGAGGGAGTGTGATCAGTACGCGTACTAATGGTA 329
                       ********************** *************************************

consensus_12245#0      TTTTGGTTTGTCATGGCATGATGAAATTAAGCTGTGGTAGCAATATAATGCATATATATA 1077
consensus_12245#1      TTTTGGTTTGTCATGGCATGATGAAATTAAGCTGTGGTAGCAATATAATGCATATATATA 864
consensus_12245#2      TTTTGGTTTGTCATGGCATGATGAAATTAAGCTGTGGTAGCAATATAATGCATATATATA 389
                       ************************************************************

consensus_12245#0      TTACCTTTGTCTCATGTCCTTAGTATGTAGTAGTGGTAAATAGTACATAGCATGAATAAT 1137
consensus_12245#1      TTACCTTTGTCTCATGTCCTTAGTATGTAGTAGTGGTAAATAGTACATAGCATGAATAAT 924
consensus_12245#2      TTACCTTTGTCTCATGTCCTTAGTATGTAGTAGTGGTAAATAGTACATAGCATGAATAAT 449
                       ************************************************************

consensus_12245#0      ATACTTATCAAGGAACACTTGTGTTTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1197
consensus_12245#1      ATACTTATCAAGGAACACTTGTGTTTTGTTTAATGGCGCATGTCTGTCTTCCTGTCTGTA 984
consensus_12245#2      ATACTTATCAAGGAACACTTGTGTTTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 509
                       *********************************      *                   *

consensus_12245#0      AAAAAAAAAAAAAAAAA-------------------- 1214
consensus_12245#1      AAAAA-------------------------------- 989
consensus_12245#2      AACAAAATCATGCCGTTACGTAGCGTATCGTTGACAG 546
                       ** **                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)