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Oryza sativa
cluster # 12248 cluster # 12248       Sequences # 10       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12248#0 length = 1961 sequences # 8  
 consensus_12248#1 length = 717 sequences # 1  
consensus_12248#2 length = 493 sequences # 1  
consensusID : consensus_12248#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1961
fasta sequence 
                              [TGACTTCGACTCCACACAGCAGCGACGCCACCTACTCTCTCTCTCTGTCTCTCGCTCTCGCCGTCGCCGAGCTAGTTGAGCCGCGGATGGATAGCCCCGGTGGTGCGGCGGCGGCGGCGGCGGCGGCGGAGTCCAGCAATCGCGCGGGAGAAGATGCTAAAAGTGATGGTGTATCTTGTCAGAATTCGCGACGGCCAAACCTTTCATTACAAATACCAAACAGGGCATTTGATGACACTCTGCCAACGTCAACTAGAATCAAAATATCACCCAGCCCAAATTCTGCAAGAAGTGGTTTACCACCAAGGCCGAATTCAACTAGAACAAAATCATCCATCAGGGGCATCATTCCACAAAGGAGCTTCAAAGCAAAGAGTTCATTACAGGATGGTGACCAGACAATTCTTCTAATTCCTGACACACCATCATCATCAGGACAGCAGGTGAAGGCAACTACATCAAGATCATTTTCTTTCACAAAGGTCATCAACTCCTTATCAGCGAAGCGAACCCACTCTCTTCCAGTTACTCCTGTTGCAGCTTCAGGACCTTCTTCTCATGAAGGTCATGCAGACAACCTGCCAAGTACAGTTAAGAATGAGGTTGAAACACAAATTAGGCGCTCACTCTCAGCACCAGGAAATCATGATAGTAAGGATCTGAGGAGGACGGCTTCATCAGGCCTTATACGTGTGATTCCCACAACCCCACGACCTGTTCCTGTTGAAACTGTTGCATCAAATGATGGCATTGAAGAAGCAGTAGATGCTCCTGAAGATGGAGGTGAAGACATTCCTGAAGAAGATGCTGTCTGCAGAATTTGCCTAGTTGAACTCAATGAAGGAGGTGAAACACTTAAATTGGAGTGCAGCTGCAAGGGAGAACTTGCTCTTGCACACCAGGAGTGTGCAATAAAATGGTTTAGCATCAAGGGAAACAAGACATGCGATGTTTGCAGGCAGGAAGTTCAGAATCTACCTGTGACTTTATTGAGAATACAGATTCGAACTGTTAACAGACAACCGCGGAATGGTGTTCAGCAAAGAGCAGCACATCCACACAGATTTTGGAAGGAGACTCCAGTTCTAGTCATGGTCAGCACGCTTGCGTACTTCTGTTTCTTGGAGCAACTCTTGGTTGCTGATATGAAGTCACGTGCACTAGCTATTTCTTTGCCTTTCTCCTGTCTCCTGGGCATATTTTCTTCCATCCTCGCATCCACAATGGCAACCGATAATTACCTATGGGCTTTCGCTACGTTCCAGTTTGCTTTCCTAATCCTATTTGCTCATATTTTCTACAACTTGTTAAAAATGGGGGCAGTCCTTGCAATCCTACTTGCATCGTTCACTGGTTTCGGCATCGCTATTAGTCTAAATGCAATGCTAATAGAATACCTGAGGTGGAGACTCCTGCGGAATCAACGGTTAACTCAACGTAGAAATCACAGACATGGTCAATCTGGAAACAATGCTTCAAACGAGAACACTGCAAGTAATGCTAGGCAGCAAGGCAGCGGAAGCGATCAACAGTCTGCAGAACATGGCTGAAGATGATCCATCTGTGGTTTTGCAGGTATCATGGTGATGATAAAATTCAAAATCAAAAGTGTTAATGAATGAATGGAATAAAGGCGCCACTGGTAAAACCGCAAATCTGCAATTCCAAGAATGCCATGGCCGGTTGCCACCTAAGTTGATCGTGAAACAAAGTTATTATTCAGAAAAAGGGGGCTCTCAAGTCTCTCAACTCTGAACCAAAAAGGTCCAGCAGTCTCCATTTACTCCCGGTTATAGTTTAGTAGTCCA-GTGTGATATGTGTGTTTATGAAATGTATAAATTGCGAAAGCAAATACTACACACCGACCTTTGTATCACAACCATGAACA-AACTGTATATAGCTCATCGTTGTCGATTTTACTTTGCTGCAAACTGTGAGATGGAGATGCTACAAAAAAAAAA]

[+] EMBL AK069562             [TGACTTCGACTCCACACAGCAGCGACGCCACCTACTCTCTCTCTCTGTCTCTCGCTCTCGCCGTCGCCGAGCTAGTTGAGCCGCGGATGGATAGCCCCGGTGGTGCGGCGGCGGCGGCGGCGGCGGCGGAGTCCAGCAATCGCGCGGGAGAAGATGCTAAAAGTGATGGTGTATCTTGTCAGAATTCGCGACGGCCAAACCTTTCATTACAAATACCAAACAGGGCATTTGATGACACTCTGCCAACGTCAACTAGAATCAAAATATCACCCAGCCCAAATTCTGCAAGAAGTGGTTTACCACCAAGGCCGAATTCAACTAGAACAAAATCATCCATCAGGGGCATCATTCCACAAAGGAGCTTCAAAGCAAAGAGTTCATTACAGGATGGTGACCAGACAATTCTTCTAATTCCTGACACACCATCATCATCAGGACAGCAGGTGAAGGCAACTACATCAAGATCATTTTCTTTCACAAAGGTCATCAACTCCTTATCAGCGAAGCGAACCCACTCTCTTCCAGTTACTCCTGTTGCAGCTTCAGGACCTTCTTCTCATGAAGGTCATGCAGACAACCTGCCAAGTACAGTTAAGAATGAGGTTGAAACACAAATTAGGCGCTCACTCTCAGCACCAGGAAATCATGATAGTAAGGATCTGAGGAGGACGGCTTCATCAGGCCTTATACGTGTGATTCCCACAACCCCACGACCTGTTCCTGTTGAAACTGTTGCATCAAATGATGGCATTGAAGAAGCAGTAGATGCTCCTGAAGATGGAGGTGAAGACATTCCTGAAGAAGATGCTGTCTGCAGAATTTGCCTAGTTGAACTCAATGAAGGAGGTGAAACACTTAAATTGGAGTGCAGCTGCAAGGGAGAACTTGCTCTTGCACACCAGGAGTGTGCAATAAAATGGTTTAGCATCAAGGGAAACAAGACATGCGATGTTTGCAGGCAGGAAGTTCAGAATCTACCTGTGACTTTATTGAGAATACAGATTCGAACTGTTAACAGACAACCGCGGAATGGTGTTCAGCAAAGAGCAGCACATCCACACAGATTTTGGAAGGAGACTCCAGTTCTAGTCATGGTCAGCACGCTTGCGTACTTCTGTTTCTTGGAGCAACTCTTGGTTGCTGATATGAAGTCACGTGCACTAGCTATTTCTTTGCCTTTCTCCTGTCTCCTGGGCATATTTTCTTCCATCCTCGCATCCACAATGGCAACCGATAATTACCTATGGGCTTTCGCTACGTTCCAGTTTGCTTTCCTAATCCTATTTGCTCATATTTTCTACAACTTGTTAAAAATGGGGGCAGTCCTTGCAATCCTACTTGCATCGTTCACTGGTTTCGGCATCGCTATTAGTCTAAATGCAATGCTAATAGAATACCTGAGGTGGAGACTCCTGCGGAATCAACGGTTAACTCAACGTAGAAATCACAGACATGGTCAATCTGGAAACAATGCTTCAAACGAGAACACTGCAAGTAATGCTAGGCAGCAAGGCAGCGGAAGCGATCAACAGTCTGCAGAACATGGCTGAAGATGATCCATCTGTGGTTTTGCAGGTATCATGGTGATGATAAAATTCAAAATCAAAAGTGTTAATGAATGAATGGAATAAAGGCGCCACTGGTAAAACCGCAAATCTGCAATTCCAAGAATGCCATGGCCGGTTGCCACCTAAGTTGATCGTGAAACAAAGTTATTATTCAGAAAAAGGGGGCTCTCAAGTCTCTCAACTCTGAACCAAAAAGGTCCAGCAGTCTCCATTTACTCCCGGTTATAGTTTAGTAGTCCA GTGTGATATGTGTGTTTATGAAATGTATAAATTGCGAAAGCAAATACTACACACCGACCTTTGTATCACAACCATGAACA AACTGTATATAGCTCATCGTTGTCGATTTT                                           ]
[+] EMBL CB668631             [                     GCGACGCCACCTACTCTCTCTCTCTGTCTCTCGCTCTCGCCGTCGCCGAGCTAGTTGAGCCGCGGATGGATAGCCCCGGTGGTGCGGCGGCGGCGGCGGCGGCGGCGGAGTCCAGCAATCGCGCGGGAGAAGATGCTAAAAGTGATGGTGTATCTTGTCAGAATTCGCGACGGCCAAACCTTTCATTACAAATACCAAACAGGGCATTTGATGACACTCTGCCAACGTCAACTAGAATCAAAATATCACCCAGCCCAAATTCTGCAAGAAGTGGTTTACCACCAAGGCCGAATTCAACTAGAACAAAATCATCCATCAGGGGCATCATTCCACAAAGGAGCTTCAAAGCAAAGAGTTCATTACAGGATGGTGACCAGACAATTCTTCTAATTCCTGACACACCATCATCATCAGGACAGCAGGTGAAGGCAACTACATCAAGATCATTTTCTTTCACAAAGGTCATCAACTCCTTATCAGCGAAGCGAACCCACTCTCTTCCAGTTACTCCTGTTGCAGCTTCAGGACCTTCTTCTCATGAAGGTCATGCAGACAACCTGCCAAGTACAGTTAAGAATGAGGTTGAAACACAAATTAGGCGCTCACTCTCAGCACCAGGAAATCATGATAGTAAGGATCTGAGGAGGACGGCTTCATCAGGCCTTATACGTGTGATTCCCACAACCCCACGACCTGTTCCTGTTGAAACTGTTGCATCAAATGATGGCATTGAAGAAGCAGTAGATGCTCCTGAAGATGGAGGTGAAGACATTCCTGAAGAAGATGCTGTCTGCAGAATTTGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK101610             [                                     TCTCTCTCTGTCTCTCGCTCTCGCCGTCGCCGAGCTAGTTGAGCCGCGGATGGATAGCCCCGGTGGTGCGGCGGCGGCGGCGGCGGCGGCGGAGTCCAGCAATCGCGCGGGAGAAGATGCTAAAAGTGATGGTGTATCTTGTCAGAATTCGCGACGGCCAAACCTTTCATTACAAATACCAAACAGGGCATTTGATGACACTCTGCCAACGTCAACTAGAATCAAAATATCACCCAGCCCAAATTCTGCAAGAAGTGGTTTACCACCAAGGCCGAATTCAACTAGAACAAAATCATCCATCAGGGGCATCATTCCACAAAGGAGCTTCAAAGCAAAGAGTTCATTACAGGATGGTGACCAGACAATTCTTCTAATTCCTGACACACCATCATCATCAGGACAGCAGGTGAAGGCAACTACATCAAGATCATTTTCTTTCACAAAGGTCATCAACTCCTTATCAGCGAAGCGAACCCACTCTCTTCCAGTTACTCCTGTTGCAGCTTCAGGACCTTCTTCTCATGAAGGTCATGCAGACAACCTGCCAAGTACAGTTAAGAATGAGGTTGAAACACAAATTAGGCGCTCACTCTCAGCACCAGGAAATCATGATAGTAAGGATCTGAGGAGGACGGCTTCATCAGGCCTTATACGTGTGATTCCCACAACCCCACGACCTGTTCCTGTTGAAACTGTTGCATCAAATGATGGCATTGAAGAAGCAGTAGATGCTCCTGAAGATGGAGGTGAAGACATTCCTGAAGAAGATGCTGTCTGCAGAATTTGCCTAGTTGAACTCAATGAAGGAGGTGAAACACTTAAATTGGAGTGCAGCTGCAAGGGAGAACTTGCTCTTGCACACCAGGAGTGTGCAATAAAATGGTTTTGCATCAAGGGAAACAAGACATGCGATGTTTGCAGGCAGGAAGTTCAGAATCTACCTGTGACTTTATTGAGAATACAGATTCGAACTGTTAACAGACAACCGCGGAATGGTGTTCAGCAAAGAGCAGCACATCCACACAGATTTTGGAAGGAGACTCCAGTTCTAGTCATGGTCAGCACGCTTGCGTACTTCTGTTTCTTGGAGCAACTCTTGGTTGCTGATATGAAGTCACGTGCACTAGCTATTTCTTTGCCTTTCTCCTGTCTCCTGGGCATATTTTCTTCCATCCTCGCATCCACAATGGCAACCGATAATTACCTATGGGCTTTCGCTACGTTCCAGTTTGCTTTCCTAATCCTATTTGCTCATATTTTCTACAACTTGTTAAAAATGGGGGCAGTCCTTGCAATCCTACTTGCATCGTTCACTGGTTTCGGCATCGCTATTAGTCTAAATGCAATGCTAATAGAATACCTGAGGTGGAGACTCCTGCGGAATCAACGGTTAACTCAACGTAGAAATCACAGACATGGTCAATCTGGAAACAATGCTTCAAACGAGAACACTGCAAGTAATGCTAGGCAGCAAGGCAGCGGAAGCGATCAACAGTCTGCAGAACATGGCTGAAGATGATCCATCTGTGGTTTTGCAGGTATCATGGTGATGATAAAATTCAAAATCAAAAGTGTTAATGAATGAATGGAATAAAGGCGCCACTGGTAAAACCGCAAATCTGCAATTCCAAGAATGCCATGGCCGGTTGCCACCTAAGTTGATCGTGAAACAAAGTTATTATTCAGAAAAAGGGGGCTCTCAAGTCTCTCAACTCTGAACCAAAAAGGTCCAGCAGTCTCCATTTACTCCCGGTTATAGTTTAGTAGTCCA GTGTGATATGTGTGTTTATGAAATGTATAAATTGCGAAAGCAAATACTACACACCGACCTTTGTATCACAACCATGAACA AACTGTATATAGCTCATCGT                                                     ]
[+] EMBL CB657056             [                                                                      GCTAGTTGAGCCGCGGATGGATAGCCCCGGTGGTGCGGCGGCGGCGGCGGCGGCGGCGGAGTCCAGCAATCGCGCGGGAGAAGATGCTAAAAGTGATGGTGTATCTTGTCAGAATTCGCGACGGCCAAACCTTTCATTACAAATACCAAACAGGGCATTTGATGACACTCTGCCAACGTCAACTAGAATCAAAATATCACCCAGCCCAAATTCTGCAAGAAGTGGTTTACCACCAAGGCCGAATTCAACTAGAACAAAATCATCCATCAGGGGCATCATTCCACAAAGGAGCTTCAAAGCAAAGAGTTCATTACAGGATGGTGACCAGACAATTCTTCTAATTCCTGACACACCATCATCATCAGGACAGCAGGTGAAGGCAACTACATCAAGATCATTTTCTTTCACAAAGGTCATCAACTCCTTATCAGCGAAGCGAACCCACTCTCTTCCAGTTACTCCTGTTGCAGCTTCAGGACCTTCTTCTCATGAAGGTCATGCAGACAACCTGCCAAGTACAGTTAAGAATGAGGTTGAAACACAAATTAGGCGCTCACTCTCAGCACCAGGAAATCATGATAGTAAGGATCTGAGGAGGACGGCTTCATCAGGCCTTATACGTGTGATTCCCACAACCCCACGACCTGTTCCTGTTGAAACTGTTGCATCAAATGATGGCATTGAAGAAGCAGTAGATGCTCCTGAAGATGGAGGTGAAGACATTCCTGAAGAAGATGCTGTCTGCAGAATTTGCCTAGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF323503             [                                                                                                                               GGAGTCCAGCAATCGCGCGGGAGAAGATGCTAAAAGTGATGGTGTATCTTGTCAGAATTCGCGACGGCCAAACCTTTCATTACAAATACCAAACAGGGCATTTGATGACACTCTGCCAACGTCAACTAGAATCAAAATATCACCCAGCCCAAATTCTGCAAGAAGTGGTTTACCACCAAGGCCGAATTCAACTAGAACAAAATCATCCATCAGGGGCATCATTCCACAAAGGAGCTTCAAAGCAAAGAGTTCATTACAGGATGGTGACCAGACAATTCTTCTAATTCCTGACACACCATCATCATCAGGACAGCAGGTGAAGGCAACTACATCAAGATCATTTTCTTTCACAAAGGTCATCAACTCCTTATCAGCGAAGCGAACCCACTCTCTTCCAGTTACTCCTGTTGCAGCTTCAGGACCTTCTTCTCATGAAGGTCATGCAGACAACCTGCCAAGTACAGTTAAGAATGAGGTTGAAACACAAATTAGGCGCTCACTCTCAGCACCAGGAAATCATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF322876             [                                                                                                                               GGAGTCCAGCAATCGCGCGGGAGAAGATGCTAAAAGTGATGGTGTATCTTGTCAGAATTCGCGACGGCCAAACCTTTCATTACAAATACCAAACAGGGCATTTGATGACACTCTGCCAACGTCAACTAGAATCAAAATATCACCCAGCCCAAATTCTGCAAGAAGTGGTTTACCACCAAGGCCGAATTCAACTAGAACAAAATCATCCATCAGGGGCATCATTCCACAAAGGAGCTTCAAAGCAAAGAGTTCATTACAGGATGGTGACCAGACAATTCTTCTAATTCCTGACACACCATCATCATCAGGACAGCAGGTGAAGGCAACTACATCAAGATCATTTTCTTTCACAAAGGTCATCAACTCCTTATCAGCGAAGCGAACCCACTCTCTTCCAGTTACTCCTGTTGCAGCTTCAGGACCTTCTTCTCATGAAGGTCATGCAGACAACCTGCCAAGTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB619514             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCTTCCATCCTCGCATCCACAATGGCAACCGATAATTACCTATGGGCTTTCGCTACGTTCCAGTTTGCTTTCCTAATCCTATTTGCTCATATTTTCTACAACTTGTTAAAAATGGGGGCAGTCCTTGCAATCCTACTTGCATCGTTCACTGGTTTCGGCATCGCTATTAGTCTAAATGCAATGCTAATAGAATACCTGAGGTGGAGACTCCTGCGGAATCAACGGTTAACTCAACGTAGAAATCACAGACATGGTCAATCTGGAAACAATGCTTCAAACGAGAACACTGCAAGTAATGCTAGGCAGCAAGGCAGCGGAAGCGATCAACAGTCTGCAGAACATGGCTGAAGATGATCCATCTGTGGTTTTGCAGGTATCATGGTGATGATAAAATTCAAAATCAAAAGTGTTAATGAATGAATGGAATAAAGGCGCCACTGGTAAAACCGCAAATCTGCAATTCCAAGAATGCCATGGCCGGTTGCCACCTAAGTTGATCGTGAAACAAAGTTATTATTCAGAAAAAGGGGGCTCTCAAGTCTCTCAACTCTGAACCAAAAAGGTCCAGCAGTCTCCATTTACTCCCGGTTATAGTTTAGTAGTCCA GTGTGATATGTGTGTTTATGAAATGTATAAATTGCGAAAGCAAATACTACACACCGACCTTTGTATCACAACCATGAAAAGGGCTGTATATAGCTCATCG                                                      ]
[+] EMBL BI813424             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATGCCAT GCCGGTTGCCACCTAAGTTGATCGTGAAACAAAGTTATTATTCAGAAAAAGGGGGCTCTCAAGTCTCTCAACTCTGAACCCAAAAGGTCCA CAGTCTCCATTTACTCCCGGTTATAGTTTAGTAGTCCACGTGTGATATGTGTGTTTATGAAATGTATAAATTGCGAAAGCAAATACTACACACCGACCTTTGTATCACAACCATGAAC  AACTGTATATAGCTCATCGTTGTCGATTTTACTTTGCTGCAAACTGTGAGATGGAGATGCTACAAAAAAAAAA]




>consensus_12248#0
TGACTTCGACTCCACACAGCAGCGACGCCACCTACTCTCTCTCTCTGTCTCTCGCTCTCG
CCGTCGCCGAGCTAGTTGAGCCGCGGATGGATAGCCCCGGTGGTGCGGCGGCGGCGGCGG
CGGCGGCGGAGTCCAGCAATCGCGCGGGAGAAGATGCTAAAAGTGATGGTGTATCTTGTC
AGAATTCGCGACGGCCAAACCTTTCATTACAAATACCAAACAGGGCATTTGATGACACTC
TGCCAACGTCAACTAGAATCAAAATATCACCCAGCCCAAATTCTGCAAGAAGTGGTTTAC
CACCAAGGCCGAATTCAACTAGAACAAAATCATCCATCAGGGGCATCATTCCACAAAGGA
GCTTCAAAGCAAAGAGTTCATTACAGGATGGTGACCAGACAATTCTTCTAATTCCTGACA
CACCATCATCATCAGGACAGCAGGTGAAGGCAACTACATCAAGATCATTTTCTTTCACAA
AGGTCATCAACTCCTTATCAGCGAAGCGAACCCACTCTCTTCCAGTTACTCCTGTTGCAG
CTTCAGGACCTTCTTCTCATGAAGGTCATGCAGACAACCTGCCAAGTACAGTTAAGAATG
AGGTTGAAACACAAATTAGGCGCTCACTCTCAGCACCAGGAAATCATGATAGTAAGGATC
TGAGGAGGACGGCTTCATCAGGCCTTATACGTGTGATTCCCACAACCCCACGACCTGTTC
CTGTTGAAACTGTTGCATCAAATGATGGCATTGAAGAAGCAGTAGATGCTCCTGAAGATG
GAGGTGAAGACATTCCTGAAGAAGATGCTGTCTGCAGAATTTGCCTAGTTGAACTCAATG
AAGGAGGTGAAACACTTAAATTGGAGTGCAGCTGCAAGGGAGAACTTGCTCTTGCACACC
AGGAGTGTGCAATAAAATGGTTTAGCATCAAGGGAAACAAGACATGCGATGTTTGCAGGC
AGGAAGTTCAGAATCTACCTGTGACTTTATTGAGAATACAGATTCGAACTGTTAACAGAC
AACCGCGGAATGGTGTTCAGCAAAGAGCAGCACATCCACACAGATTTTGGAAGGAGACTC
CAGTTCTAGTCATGGTCAGCACGCTTGCGTACTTCTGTTTCTTGGAGCAACTCTTGGTTG
CTGATATGAAGTCACGTGCACTAGCTATTTCTTTGCCTTTCTCCTGTCTCCTGGGCATAT
TTTCTTCCATCCTCGCATCCACAATGGCAACCGATAATTACCTATGGGCTTTCGCTACGT
TCCAGTTTGCTTTCCTAATCCTATTTGCTCATATTTTCTACAACTTGTTAAAAATGGGGG
CAGTCCTTGCAATCCTACTTGCATCGTTCACTGGTTTCGGCATCGCTATTAGTCTAAATG
CAATGCTAATAGAATACCTGAGGTGGAGACTCCTGCGGAATCAACGGTTAACTCAACGTA
GAAATCACAGACATGGTCAATCTGGAAACAATGCTTCAAACGAGAACACTGCAAGTAATG
CTAGGCAGCAAGGCAGCGGAAGCGATCAACAGTCTGCAGAACATGGCTGAAGATGATCCA
TCTGTGGTTTTGCAGGTATCATGGTGATGATAAAATTCAAAATCAAAAGTGTTAATGAAT
GAATGGAATAAAGGCGCCACTGGTAAAACCGCAAATCTGCAATTCCAAGAATGCCATGGC
CGGTTGCCACCTAAGTTGATCGTGAAACAAAGTTATTATTCAGAAAAAGGGGGCTCTCAA
GTCTCTCAACTCTGAACCAAAAAGGTCCAGCAGTCTCCATTTACTCCCGGTTATAGTTTA
GTAGTCCAGTGTGATATGTGTGTTTATGAAATGTATAAATTGCGAAAGCAAATACTACAC
ACCGACCTTTGTATCACAACCATGAACAAACTGTATATAGCTCATCGTTGTCGATTTTAC
TTTGCTGCAAACTGTGAGATGGAGATGCTACAAAAAAAAAA

consensusID : consensus_12248#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 717
fasta sequence 
                              [TTTCCATCCTCGCATCCGCAATGGCAACGGATAATTACCTATGGGCTTTCGCTACGTTCCAGTTTGCTTTCCTAATCCTATTTGCTCATATTTTTTACAACTTGTTAAAAATGGGGGCAGTCCTTGCAATCCTAATTGCATTGTTCACTGGTTTTGGCATCGGTATTAGTTTAAATGCAATGGTAATAGAATTCCTGAGGTGGAGACTCCTGCGGAATCAACGGTTAACTTAACGTAGAAATCACAGACATGGTCAATTTGGAAACAATGCTTCAAACGAGAACCCTGCAAGTAATGTTAGGCAGCAAGGCAGCGGAAGCGATCAACAGTTTGCAGAACATGGCTGAAGATGATCCATCTGTGGTTTTGCAGGTATCATGGTGATGATAAATTGCTGAATTTTGCAGATTCAAAATCAAAAGTGTTAATGAATGAATGGAATAAAGGCGCCCCTGGTAAAACCGCAAATTTGCAATTCCAAGAATGCCATGGCCGGTTGCCCCCTAAGTTGATTGTGAAACAAAGTTATTATTCAGAAAAAGGGGGGTTTCAAGTTTTTCTATTTTGAACCAAAAAGGTCCAGCAGTTTCCATTTACTCCCGGTTATAGTTTAGTAGTCCAGTGTGATATGGGTGTTTATGAAATGTATAAATTGGGAAAGCAAATACTACACCCCGACCTTTGTATTACAACCATGACCAAACTGAATATAGCTCA]

[-] EMBL CB668632             [TTTCCATCCTCGCATCCGCAATGGCAACGGATAATTACCTATGGGCTTTCGCTACGTTCCAGTTTGCTTTCCTAATCCTATTTGCTCATATTTTTTACAACTTGTTAAAAATGGGGGCAGTCCTTGCAATCCTAATTGCATTGTTCACTGGTTTTGGCATCGGTATTAGTTTAAATGCAATGGTAATAGAATTCCTGAGGTGGAGACTCCTGCGGAATCAACGGTTAACTTAACGTAGAAATCACAGACATGGTCAATTTGGAAACAATGCTTCAAACGAGAACCCTGCAAGTAATGTTAGGCAGCAAGGCAGCGGAAGCGATCAACAGTTTGCAGAACATGGCTGAAGATGATCCATCTGTGGTTTTGCAGGTATCATGGTGATGATAAATTGCTGAATTTTGCAGATTCAAAATCAAAAGTGTTAATGAATGAATGGAATAAAGGCGCCCCTGGTAAAACCGCAAATTTGCAATTCCAAGAATGCCATGGCCGGTTGCCCCCTAAGTTGATTGTGAAACAAAGTTATTATTCAGAAAAAGGGGGGTTTCAAGTTTTTCTATTTTGAACCAAAAAGGTCCAGCAGTTTCCATTTACTCCCGGTTATAGTTTAGTAGTCCAGTGTGATATGGGTGTTTATGAAATGTATAAATTGGGAAAGCAAATACTACACCCCGACCTTTGTATTACAACCATGACCAAACTGAATATAGCTCA]




>consensus_12248#1
TTTCCATCCTCGCATCCGCAATGGCAACGGATAATTACCTATGGGCTTTCGCTACGTTCC
AGTTTGCTTTCCTAATCCTATTTGCTCATATTTTTTACAACTTGTTAAAAATGGGGGCAG
TCCTTGCAATCCTAATTGCATTGTTCACTGGTTTTGGCATCGGTATTAGTTTAAATGCAA
TGGTAATAGAATTCCTGAGGTGGAGACTCCTGCGGAATCAACGGTTAACTTAACGTAGAA
ATCACAGACATGGTCAATTTGGAAACAATGCTTCAAACGAGAACCCTGCAAGTAATGTTA
GGCAGCAAGGCAGCGGAAGCGATCAACAGTTTGCAGAACATGGCTGAAGATGATCCATCT
GTGGTTTTGCAGGTATCATGGTGATGATAAATTGCTGAATTTTGCAGATTCAAAATCAAA
AGTGTTAATGAATGAATGGAATAAAGGCGCCCCTGGTAAAACCGCAAATTTGCAATTCCA
AGAATGCCATGGCCGGTTGCCCCCTAAGTTGATTGTGAAACAAAGTTATTATTCAGAAAA
AGGGGGGTTTCAAGTTTTTCTATTTTGAACCAAAAAGGTCCAGCAGTTTCCATTTACTCC
CGGTTATAGTTTAGTAGTCCAGTGTGATATGGGTGTTTATGAAATGTATAAATTGGGAAA
GCAAATACTACACCCCGACCTTTGTATTACAACCATGACCAAACTGAATATAGCTCA

consensusID : consensus_12248#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 493
fasta sequence 
                              [TGATCCATCTGTGGTTTTCAGGTATCATGTGATGATAAATTGCTGAATTCTGCAGATTCAAAATCAAAAGTCGTTAATGAATGAATGGAATAAACGGCGCCACTGGTACAAACCGCACAATCTGCAATTCCAAGAATCCCATGGCCGGTTGCCACCTAAGTTGATCGTGAAACAAGTTACTTATTCAGAAAAAGGGGGCTCCTCAAGTCTCTCAACTCTGAACCAAAAAGGTCCACAGTCTCCATTTACTCCCGGTTATACGTTTAGTAGTCCAGTGTGATATGTGTGTTTATGAAATGTATAAATTGCGAAAGCAAATACTACACACCGACCTTTGTATCACAACCATGAACAAACTGTATATAGCTCATCGTTGTCGATTTTACTTTGCTGCAAACTGTGAGATGGAGATGCTACATTCTCTGAATTTTCTTTCTGCAGTCAGGTTCCCTGAACTGTATATCCAACTTCGACGAAATCCGAGACAAAAAAA]

[+] EMBL BI811811             [TGATCCATCTGTGGTTTTCAGGTATCATGTGATGATAAATTGCTGAATTCTGCAGATTCAAAATCAAAAGTCGTTAATGAATGAATGGAATAAACGGCGCCACTGGTACAAACCGCACAATCTGCAATTCCAAGAATCCCATGGCCGGTTGCCACCTAAGTTGATCGTGAAACAAGTTACTTATTCAGAAAAAGGGGGCTCCTCAAGTCTCTCAACTCTGAACCAAAAAGGTCCACAGTCTCCATTTACTCCCGGTTATACGTTTAGTAGTCCAGTGTGATATGTGTGTTTATGAAATGTATAAATTGCGAAAGCAAATACTACACACCGACCTTTGTATCACAACCATGAACAAACTGTATATAGCTCATCGTTGTCGATTTTACTTTGCTGCAAACTGTGAGATGGAGATGCTACATTCTCTGAATTTTCTTTCTGCAGTCAGGTTCCCTGAACTGTATATCCAACTTCGACGAAATCCGAGACAAAAAAA]




>consensus_12248#2
TGATCCATCTGTGGTTTTCAGGTATCATGTGATGATAAATTGCTGAATTCTGCAGATTCA
AAATCAAAAGTCGTTAATGAATGAATGGAATAAACGGCGCCACTGGTACAAACCGCACAA
TCTGCAATTCCAAGAATCCCATGGCCGGTTGCCACCTAAGTTGATCGTGAAACAAGTTAC
TTATTCAGAAAAAGGGGGCTCCTCAAGTCTCTCAACTCTGAACCAAAAAGGTCCACAGTC
TCCATTTACTCCCGGTTATACGTTTAGTAGTCCAGTGTGATATGTGTGTTTATGAAATGT
ATAAATTGCGAAAGCAAATACTACACACCGACCTTTGTATCACAACCATGAACAAACTGT
ATATAGCTCATCGTTGTCGATTTTACTTTGCTGCAAACTGTGAGATGGAGATGCTACATT
CTCTGAATTTTCTTTCTGCAGTCAGGTTCCCTGAACTGTATATCCAACTTCGACGAAATC
CGAGACAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12248#0      TGACTTCGACTCCACACAGCAGCGACGCCACCTACTCTCTCTCTCTGTCTCTCGCTCTCG 60
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      CCGTCGCCGAGCTAGTTGAGCCGCGGATGGATAGCCCCGGTGGTGCGGCGGCGGCGGCGG 120
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      CGGCGGCGGAGTCCAGCAATCGCGCGGGAGAAGATGCTAAAAGTGATGGTGTATCTTGTC 180
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      AGAATTCGCGACGGCCAAACCTTTCATTACAAATACCAAACAGGGCATTTGATGACACTC 240
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      TGCCAACGTCAACTAGAATCAAAATATCACCCAGCCCAAATTCTGCAAGAAGTGGTTTAC 300
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      CACCAAGGCCGAATTCAACTAGAACAAAATCATCCATCAGGGGCATCATTCCACAAAGGA 360
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      GCTTCAAAGCAAAGAGTTCATTACAGGATGGTGACCAGACAATTCTTCTAATTCCTGACA 420
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      CACCATCATCATCAGGACAGCAGGTGAAGGCAACTACATCAAGATCATTTTCTTTCACAA 480
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      AGGTCATCAACTCCTTATCAGCGAAGCGAACCCACTCTCTTCCAGTTACTCCTGTTGCAG 540
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      CTTCAGGACCTTCTTCTCATGAAGGTCATGCAGACAACCTGCCAAGTACAGTTAAGAATG 600
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      AGGTTGAAACACAAATTAGGCGCTCACTCTCAGCACCAGGAAATCATGATAGTAAGGATC 660
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      TGAGGAGGACGGCTTCATCAGGCCTTATACGTGTGATTCCCACAACCCCACGACCTGTTC 720
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      CTGTTGAAACTGTTGCATCAAATGATGGCATTGAAGAAGCAGTAGATGCTCCTGAAGATG 780
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      GAGGTGAAGACATTCCTGAAGAAGATGCTGTCTGCAGAATTTGCCTAGTTGAACTCAATG 840
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      AAGGAGGTGAAACACTTAAATTGGAGTGCAGCTGCAAGGGAGAACTTGCTCTTGCACACC 900
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      AGGAGTGTGCAATAAAATGGTTTAGCATCAAGGGAAACAAGACATGCGATGTTTGCAGGC 960
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      AGGAAGTTCAGAATCTACCTGTGACTTTATTGAGAATACAGATTCGAACTGTTAACAGAC 1020
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      AACCGCGGAATGGTGTTCAGCAAAGAGCAGCACATCCACACAGATTTTGGAAGGAGACTC 1080
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      CAGTTCTAGTCATGGTCAGCACGCTTGCGTACTTCTGTTTCTTGGAGCAACTCTTGGTTG 1140
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      CTGATATGAAGTCACGTGCACTAGCTATTTCTTTGCCTTTCTCCTGTCTCCTGGGCATAT 1200
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      TTTCTTCCATCCTCGCATCCACAATGGCAACCGATAATTACCTATGGGCTTTCGCTACGT 1260
consensus_12248#1      ---TTTCCATCCTCGCATCCGCAATGGCAACGGATAATTACCTATGGGCTTTCGCTACGT 57
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      TCCAGTTTGCTTTCCTAATCCTATTTGCTCATATTTTCTACAACTTGTTAAAAATGGGGG 1320
consensus_12248#1      TCCAGTTTGCTTTCCTAATCCTATTTGCTCATATTTTTTACAACTTGTTAAAAATGGGGG 117
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      CAGTCCTTGCAATCCTACTTGCATCGTTCACTGGTTTCGGCATCGCTATTAGTCTAAATG 1380
consensus_12248#1      CAGTCCTTGCAATCCTAATTGCATTGTTCACTGGTTTTGGCATCGGTATTAGTTTAAATG 177
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      CAATGCTAATAGAATACCTGAGGTGGAGACTCCTGCGGAATCAACGGTTAACTCAACGTA 1440
consensus_12248#1      CAATGGTAATAGAATTCCTGAGGTGGAGACTCCTGCGGAATCAACGGTTAACTTAACGTA 237
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      GAAATCACAGACATGGTCAATCTGGAAACAATGCTTCAAACGAGAACACTGCAAGTAATG 1500
consensus_12248#1      GAAATCACAGACATGGTCAATTTGGAAACAATGCTTCAAACGAGAACCCTGCAAGTAATG 297
consensus_12248#2      ------------------------------------------------------------
                                                                                   

consensus_12248#0      CTAGGCAGCAAGGCAGCGGAAGCGATCAACAGTCTGCAGAACATGGCTGAAGATGATCCA 1560
consensus_12248#1      TTAGGCAGCAAGGCAGCGGAAGCGATCAACAGTTTGCAGAACATGGCTGAAGATGATCCA 357
consensus_12248#2      -----------------------------------------------------TGATCCA 7
                                                                            *******

consensus_12248#0      TCTGTGGTTTTGCAGGTATCATGGTGATGATAAA----------------ATTCAAAATC 1604
consensus_12248#1      TCTGTGGTTTTGCAGGTATCATGGTGATGATAAATTGCTGAATTTTGCAGATTCAAAATC 417
consensus_12248#2      TCTGTGGTTTT-CAGGTATCATG-TGATGATAAATTGCTGAATTCTGCAGATTCAAAATC 65
                       *********** *********** **********                **********

consensus_12248#0      AAAAGT-GTTAATGAATGAATGGAATAAA-GGCGCCACTGGTA-AAACCGCA-AATCTGC 1660
consensus_12248#1      AAAAGT-GTTAATGAATGAATGGAATAAA-GGCGCCCCTGGTA-AAACCGCA-AATTTGC 473
consensus_12248#2      AAAAGTCGTTAATGAATGAATGGAATAAACGGCGCCACTGGTACAAACCGCACAATCTGC 125
                       ****** ********************** ****** ****** ******** *** ***

consensus_12248#0      AATTCCAAGAATGCCATGGCCGGTTGCCACCTAAGTTGATCGTGAAACAAAGTTATTATT 1720
consensus_12248#1      AATTCCAAGAATGCCATGGCCGGTTGCCCCCTAAGTTGATTGTGAAACAAAGTTATTATT 533
consensus_12248#2      AATTCCAAGAATCCCATGGCCGGTTGCCACCTAAGTTGATCGTGAAACAAGTTACTTATT 185
                       ************ *************** *********** *********  *  *****

consensus_12248#0      CAGAAAAAGGGGGCTC-TCAAGTCTCTCAACTCTGAACCAAAAAGGTCCAGCAGTCTCCA 1779
consensus_12248#1      CAGAAAAAGGGGGGTT-TCAAGTTTTTCTATTTTGAACCAAAAAGGTCCAGCAGTTTCCA 592
consensus_12248#2      CAGAAAAAGGGGGCTCCTCAAGTCTCTCAACTCTGAACCAAAAAGGTCCA-CAGTCTCCA 244
                       ************* *  ****** * ** * * ***************** **** ****

consensus_12248#0      TTTACTCCCGGTTATA-GTTTAGTAGTCCAGTGTGATATGTGTGTTTATGAAATGTATAA 1838
consensus_12248#1      TTTACTCCCGGTTATA-GTTTAGTAGTCCAGTGTGATATGGGTGTTTATGAAATGTATAA 651
consensus_12248#2      TTTACTCCCGGTTATACGTTTAGTAGTCCAGTGTGATATGTGTGTTTATGAAATGTATAA 304
                       **************** *********************** *******************

consensus_12248#0      ATTGCGAAAGCAAATACTACACACCGACCTTTGTATCACAACCATGAACAAACTGTATAT 1898
consensus_12248#1      ATTGGGAAAGCAAATACTACACCCCGACCTTTGTATTACAACCATGACCAAACTGAATAT 711
consensus_12248#2      ATTGCGAAAGCAAATACTACACACCGACCTTTGTATCACAACCATGAACAAACTGTATAT 364
                       **** ***************** ************* ********** ******* ****

consensus_12248#0      AGCTCATCGTTGTCGATTTTACTTTGCTGCAAACTGTGAGATGGAGATGCTACAAAAAAA 1958
consensus_12248#1      AGCTCA------------------------------------------------------ 717
consensus_12248#2      AGCTCATCGTTGTCGATTTTACTTTGCTGCAAACTGTGAGATGGAGATGCTACATTCTCT 424
                       ******                                                      

consensus_12248#0      AAA--------------------------------------------------------- 1961
consensus_12248#1      ------------------------------------------------------------
consensus_12248#2      GAATTTTCTTTCTGCAGTCAGGTTCCCTGAACTGTATATCCAACTTCGACGAAATCCGAG 484
                                                                                   

consensus_12248#0      ---------
consensus_12248#1      ---------
consensus_12248#2      ACAAAAAAA 493


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)