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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12250#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 3543 fasta sequence
[TTCGACACGCGAAAACCAACCCAATGGTGGCGGCCAAGGTGTCGACCCCTGCCGGCGGCGCGGTGCGCGACGGGCTCCGGCGGCTCACGCAGCTCTCGCTCGTCTCCAAGGTCTGCTCGGAGCTGGAGGCGCACCTCGGCGTCGGCGACCGCGTCCTCGCGGAGTTCATCGTCGACCTGGGCCGCGCATCCCCTTCCGTCGCAGACTTCGACGCCAAGCTCAAGGCCCACGGCGCTGACCTGCCGGACTACCTCGCGCGCACCCTCCACACCGTCATCCACGCCATCCCTACCCACGCCGACGACGCCCCCGCCCCCGCCCCCCAAAACCCTGCCTCCCGTGGCACCGGTGCAAGGGTTTGCGGGAAGGACAAGGCGGAGGAGCGGGTGAGAGATGGGGATCCGGGGCTGTACCAGGTGTGCCGCGGGAAGGTCACCGGCCTGGCGGACGCCGGGTGCTTCGTCCGCCTCGACGACGCGCGCGGCCGCGAGGGGCTCGTCCATGTCTCCGAGATGCCCGGCCGCCGAATCGCCGTGAAGCGTGGGCAGGAGGTGTTCGTCAAGATCGTGTCCGTGCAGGGGCGCAATCTGGGGCTGTCGATGCGGGACGTCGACCAGGACACGGGGAAGGACCTCCTACCGTTGCAGCGTGCTAGGGGGGAGGATGATGTGCCGAGGCCGATGGCGAATCCGTGGACCGATCGAGCCGCCGCCACTAGGAGAAGGACGGGGGTGTCAGGAATTGTGATCCCCGAGGACAACCAGACTGGCACGGCATCGTCGCGG-CGGCCGATTAGGCGGATGAGCTCGCCGGAGAGGTGGGAAATGAAGCAGCTGATTGCTTCAGGGGTTCTGAATGCGAAGGATTACCCGGCGTTCGATGATGAGGATAGCGAGGGGATGAATTACCA-GGAGGAAGGTGTGGAGGAGGAGCTTGAGATTGAGCTTAATGAAGATGAGCCAGCATTCTTGCGGGGACAGGGTCGGTCCACAATTGATGTGTCCCCAGTGAGGATTTCCACGAACCCTGATGGGTCGCTGAGTCGAGCGGCGGTTCTGCAGAGTGCGCTTATCAAGGAGTGGCGTGATATCAGGAACGAGGATCAAAGAGCATTGGTTGACTCCATCCCAAAGGATCTGAATCGGCCATGGGAGGATCCTGTGCCTGAGGTCGGTGGGCGGTATCTCGCACAAGAGCTACGCGGTGTTGGATTATCTGCTGAAAGCATGCCAGAGTGGAAGAAAGAGGCTTATGGGAAGACTGTAACATTTGGTCAGACTTCAAGGCTTTCAATCCTGGAACAGAGGCAGAGTCTTCCAATATTCAGGCTGAAGAATGAGCTTATCGAAGCTGTTCGTGACAATCAAGTTCTGGTTGTTATTGGTGAGACCGGTTCAGGGAAAACAACCCAGGTTACACAGTACCTTGCTGAGGCAGGCTATATTACGAGGGGGAAAATTGCATGTACTCAGCCTCGCAGGGTCGCTGCAGAGTCAGTTGCCAAGCGAGTATCGGAAGAGTTTGGTTGCCGATTGGGAGAGGAAGTTGGTTACTCAATACGTTTTGATGATCACACTGGACCAGATACTGTCATTAAGTACATGACGGATGGCATGCTCCTTCGTGAAATTTTGTTGGACACTGACCTCTCTAGTTACTCCGTGGTCATGCTTGATGAGGCACATGAGAGGACTATATATACAGACATTCTCTTTGCCTTACTCAAGAGGCTAATTAGGCGTAGAACTGATCTCAAGTTAATAGTCACTTCCGCCACTCTTGATGCAGAGAAGTTCTCTGGATATTTCTTCGATTGTAATATTTTTACAATTCCCGGAAGAACATATCCTGTGGAGATACTCTATTCAAAACAGCCAGAGAGTGATTACATGCATGCTGCGCTGCTCACAGTATCACAGATCCATCTGACTGAACCTGAAGGTGATATCCTCTTGTTCTTAACTGGCCAGGAAGAGATTGATCATGCCTGTCAGTGTCTCTATGAGAGGATGAAGTCTCTAGGTAGGAATGTACCAGAATTGCTGATATATGCAGTGTACAGTGCTCAGCCAGCTGAAATGCAGTCAAAGATCTTTGAACCTACTCCTCCTGGGAAGAGGAAAGTGGTCGTGGCCACTAACATAGCGGAAGCATCTATTACAATAGATGGGATATATTATGTAATTGACCCAGGATTTGCAAAACTCAATGTGTATAACCCAAAACAAGGGCTGGATTCACTGATCATCACACCGATATCTCAAGCATCAGCTAAACAGAGGGCAGGGCGTGCTGGACGTACAGGCCCAGGAAAGTGTTATCGTCTATACACTGAAAGTGCCTATCGCAACGAAATGCCCCCCACAACTACTCCAGAAATTCAGAGGATCAACTTGGGGGAGACGGTCCTCAATATGAAGGCAATGGGAATAAACGATCTACTGTCATTTGACTTCATGGACCCCCCAGCTCCTCAATCACTCATAACTGCAATGGAACAACTGTACAACCTTGGTGCCTTAGATGAGGAGGGTCTCCTTACAAGAGTAGGGAGAAGGATGGCGGAGTTTCCACAAGAACCACCACTTTCAAAGATGCTCCTTGCTAGTGTGGACCTCGGATGCAGTGATGAAATACTGACCATCATTGCGATGATTCAAACTGGGAACATATTCTACCGGCCAAGGGAAAAACAAGCTCAAGCCGATCGGAAAAGGGGCAACTTTTTCCAACCAGAAGGGGATCACCTCACCCTGCTCACCGTGTATCAGGCGTGGAAGGCAAAGCAGTTTTCAGGTCCATGGTGCTATGAGAATTTTGTCCAGCTAACATCCCTGAGGAGAGCACAGGATGTCAGAAAACAGCTCCTTGAGATTATGGACAAGTATAAGCTTAACGTTGTCTCTGCAGGGAATGATCTCACCAAGGTGAGGAAAGCCATCACTGCTGGCTTCTTCTTCCACGCTGCCAGGAAGGATCCCCAGGGAGGATACAGGACCATTGCTGATCATCAGCAGGTGTATATCCACCCTGCCAGCGCTCTCTTCCAGCAGCAACCAGAGTGGGTTATCTATCATGAAGTCGTCATGACCACAAAAGAGTACATGAGGGAGGTGACAGCCATTGACCCAAGATGGCTTGTTGAACTGGCACCGAGGTTCTACAGATCTGCAGACCCAACGAAGATCAGTAAGCGGAAGCGCCAAGAAAGGATTGAGCCTCTGTATGACAGATACAACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTTTACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAGCTTGACCATCTTGTTTCTCTTTTCATTTAGGAAGCAGATGCTGAATGAGGTTGACAATTTTGACTGTTTCTATATTAGTTGATCCTGAAACATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK100422 [TTCGACACGCGAAAACCAACCCAATGGTGGCGGCCAAGGTGTCGACCCCTGCCGGCGGCGCGGTGCGCGACGGGCTCCGGCGGCTCACGCAGCTCTCGCTCGTCTCCAAGGTCTGCTCGGAGCTGGAGGCGCACCTCGGCGTCGGCGACCGCGTCCTCGCGGAGTTCATCGTCGACCTGGGCCGCGCATCCCCTTCCGTCGCAGACTTCGACGCCAAGCTCAAGGCCCACGGCGCTGACCTGCCGGACTACCTCGCGCGCACCCTCCACACCGTCATCCACGCCATCCCTACCCACGCCGACGACGCCCCCGCCCCCGCCCCCCAAAACCCTGCCTCCCGTGGCACCGGTGCAAGGGTTTGCGGGAAGGACAAGGCGGAGGAGCGGGTGAGAGATGGGGATCCGGGGCTGTACCAGGTGTGCCGCGGGAAGGTCACCGGCCTGGCGGACGCCGGGTGCTTCGTCCGCCTCGACGACGCGCGCGGCCGCGAGGGGCTCGTCCATGTCTCCGAGATGCCCGGCCGCCGAATCGCCGTGAAGCGTGGGCAGGAGGTGTTCGTCAAGATCGTGTCCGTGCAGGGGCGCAATCTGGGGCTGTCGATGCGGGACGTCGACCAGGACACGGGGAAGGACCTCCTACCGTTGCAGCGTGCTAGGGGGGAGGATGATGTGCCGAGGCCGATGGCGAATCCGTGGACCGATCGAGCCGCCGCCACTAGGAGAAGGACGGGGGTGTCAGGAATTGTGATCCCCGAGGACAACCAGACTGGCACGGCATCGTCGCGG CGGCCGATTAGGCGGATGAGCTCGCCGGAGAGGTGGGAAATGAAGCAGCTGATTGCTTCAGGGGTTCTGAATGCGAAGGATTACCCGGCGTTCGATGATGAGGATAGCGAGGGGATGAATTACCA GGAGGAAGGTGTGGAGGAGGAGCTTGAGATTGAGCTTAATGAAGATGAGCCAGCATTCTTGCGGGGACAGGGTCGGTCCACAATTGATGTGTCCCCAGTGAGGATTTCCACGAACCCTGATGGGTCGCTGAGTCGAGCGGCGGTTCTGCAGAGTGCGCTTATCAAGGAGTGGCGTGATATCAGGAACGAGGATCAAAGAGCATTGGTTGACTCCATCCCAAAGGATCTGAATCGGCCATGGGAGGATCCTGTGCCTGAGGTCGGTGGGCGGTATCTCGCACAAGAGCTACGCGGTGTTGGATTATCTGCTGAAAGCATGCCAGAGTGGAAGAAAGAGGCTTATGGGAAGACTGTAACATTTGGTCAGACTTCAAGGCTTTCAATCCTGGAACAGAGGCAGAGTCTTCCAATATTCAGGCTGAAGAATGAGCTTATCGAAGCTGTTCGTGACAATCAAGTTCTGGTTGTTATTGGTGAGACCGGTTCAGGGAAAACAACCCAGGTTACACAGTACCTTGCTGAGGCAGGCTATATTACGAGGGGGAAAATTGCATGTACTCAGCCTCGCAGGGTCGCTGCAGAGTCAGTTGCCAAGCGAGTATCGGAAGAGTTTGGTTGCCGATTGGGAGAGGAAGTTGGTTACTCAATACGTTTTGATGATCACACTGGACCAGATACTGTCATTAAGTACATGACGGATGGCATGCTCCTTCGTGAAATTTTGTTGGACACTGACCTCTCTAGTTACTCCGTGGTCATGCTTGATGAGGCACATGAGAGGACTATATATACAGACATTCTCTTTGCCTTACTCAAGAGGCTAATTAGGCGTAGAACTGATCTCAAGTTAATAGTCACTTCCGCCACTCTTGATGCAGAGAAGTTCTCTGGATATTTCTTCGATTGTAATATTTTTACAATTCCCGGAAGAACATATCCTGTGGAGATACTCTATTCAAAACAGCCAGAGAGTGATTACATGCATGCTGCGCTGCTCACAGTATCACAGATCCATCTGACTGAACCTGAAGGTGATATCCTCTTGTTCTTAACTGGCCAGGAAGAGATTGATCATGCCTGTCAGTGTCTCTATGAGAGGATGAAGTCTCTAGGTAGGAATGTACCAGAATTGCTGATATATGCAGTGTACAGTGCTCAGCCAGCTGAAATGCAGTCAAAGATCTTTGAACCTACTCCTCCTGGGAAGAGGAAAGTGGTCGTGGCCACTAACATAGCGGAAGCATCTATTACAATAGATGGGATATATTATGTAATTGACCCAGGATTTGCAAAACTCAATGTGTATAACCCAAAACAAGGGCTGGATTCACTGATCATCACACCGATATCTCAAGCATCAGCTAAACAGAGGGCAGGGCGTGCTGGACGTACAGGCCCAGGAAAGTGTTATCGTCTATACACTGAAAGTGCCTATCGCAACGAAATGCCCCCCACAACTACTCCAGAAATTCAGAGGATCAACTTGGGGGAGACGGTCCTCAATATGAAGGCAATGGGAATAAACGATCTACTGTCATTTGACTTCATGGACCCCCCAGCTCCTCAATCACTCATAACTGCAATGGAACAACTGTACAACCTTGGTGCCTTAGATGAGGAGGGTCTCCTTACAAGAGTAGGGAGAAGGATGGCGGAGTTTCCACAAGAACCACCACTTTCAAAGATGCTCCTTGCTAGTGTGGACCTCGGATGCAGTGATGAAATACTGACCATCATTGCGATGATTCAAACTGGGAACATATTCTACCGGCCAAGGGAAAAACAAGCTCAAGCCGATCGGAAAAGGGGCAACTTTTTCCAACCAGAAGGGGATCACCTCACCCTGCTCACCGTGTATCAGGCGTGGAAGGCAAAGCAGTTTTCAGGTCCATGGTGCTATGAGAATTTTGTCCAGCTAACATCCCTGAGGAGAGCACAGGATGTCAGAAAACAGCTCCTTGAGATTATGGACAAGTATAAGCTTAACGTTGTCTCTGCAGGGAATGATCTCACCAAGGTGAGGAAAGCCATCACTGCTGGCTTCTTCTTCCACGCTGCCAGGAAGGATCCCCAGGGAGGATACAGGACCATTGCTGATCATCAGCAGGTGTATATCCACCCTGCCAGCGCTCTCTTCCAGCAGCAACCAGAGTGGGTTATCTATCATGAAGTCGTCATGACCACAAAAGAGTACATGAGGGAGGTGACAGCCATTGACCCAAGATGGCTTGTTGAACTGGCACCGAGGTTCTACAGATCTGCAGACCCAACGAAGATCAGTAAGCGGAAGCGCCAAGAAAGGATTGAGCCTCTGTATGACAGATACAACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTTTACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAGCTTGACCATCTTGTTTCTCTTTTCATTTAGGAAGCAGATGCTGAATGAGGTTGACAATTTTGACTGTTTCTATATTAGTTGATCCTGAAACATTACTA ]
[+] EMBL AU163382 [ GCGCGACGGGCTCCGGCGGCTCACGCAGCTCTCGCTCGTCTCCAAGGTCTGCTCGGAGCTGGAGGCGCACCTCGGCGTCGGCGACCGCGTCCTCGCGGAGTTCATCGTCGACCTGGGCCGCGCATCCCCTTCCGTCGCAGACTTCGACGCCAAGCTCAAGGCCCACGGCGCTGACCTGCCGGACTACCTCGCGCGCACCCTCCACACCGTCATCCACGCCATCCCTACCCACGCCGACGACGCCCCCGCCCCCGCCCCCCAAAACCCTGCCTCCCGTGGCACCGGTGCAAGGGTTTGCGGGAAGGACAAGGCGGAGGAGCGGGTGAGAGATGGGGATCCGGGGCTGTACCAGGTGTGCCGCGGGAAGGTCACCGGCCTGGCGGACGCCGGGTGCTTCGTCCGCCTC ]
[+] EMBL C97414 [ GTCCATGTCTCCGAGATGCCCGGCCGCCGAATCGCCGTGAAGCGTGGGCAGGAGGTGTTCGTCAAGATCGTGTCCGTGCAGGGGCGCAATCTGGGGCTGTCGATGCGGGACGTCGACCAGGACACGGGGAAGGACCTCCTACCGTTGCAGCGTGCTAGGGGGGAGGATGATGTGCCGAGGCCGATGGCGAATCCGTGGACCGATCGAGCCGCCGCCACTAGGAGAAGGACGGGGGTGTCAGGAATTGTGATCCCCGAGGACAACCAGACTGGCACGGCATCGTCGCGGACGGCCGATTAGGCGGATGAGCTCGCCGGAGAGGTGGGAAATGAAGCAGCTGATTGCTTCAGGGGTTCTGAATGCGAAGGATTACCCGGCGTTCGATGATGAGGATAGCGAGGGGATGAATTACCAGGGAGGAAGGTGTGGANGAGGAGCTTGAGATTGAGCTTAATGAAGATGAGCCAGCATTCTTGCGGGGACANGGTCGGTCCACAATTGATGTGTCCCCAGTGAGGATTTCCACGAACCCTGATGGGTCGCTGAGTCGANCGG ]
[+] EMBL CB669338 [ TCGTCAAGATCGTGTCCGTGCAGGGGCGCAATCTGGGGCTGTCGATGCGGGACGTCGACCAGGACACGGGGAAGGACCTCCTACCGTTGCAGCGTGCTAGGGGGGAGGATGATGTGCCGAGGCCGATGGCGAATCCGTGGACCGATCGAGCCGCCGCCACTAGGAGAAGGACGGGGGTGTCAGGAATTGTGATCCCCGAGGACAACCAGACTGGCACGGCATCGTCGCGG CGGCCGATTAGGCGGATGAGCTCGCCGGAGAGGTGGGAAATGAAGCAGCTGATTGCTTCAGGGGTTCTGAATGCGAAGGATTACCCGGCGTTCGATGATGAGGATAGCGAGGGGATGAATTACCA GGAGGAAGGTGTGGAGGAGGAGCTTGAGATTGAGCTTAATGAAGATGAGCCAGCATTCTTGCGGGGACAGGGTCGGTCCACAATTGATGTGTCCCCAGTGAGGATTTCCACGAACCCTGATGGGTCGCTGAGTCGAGCGGCGGTTCTGCAGAGTGCGCTTATCAAGGAGTGGCGTGATATCAGGAACGAGGATCAAAGAGCATTGGTTGACTCCATCCCAAAGGATCTGAATCGGCCATGGGAGGATCCTGTGCCTGAGGTCGGTGGGCGGTATCTCGCACAAGAGCTACGCGGTGTTGGATTATCTGCTGAAAGCATGCCAGAGTGGAAGAAAGAGGCTTATGGGAAGACTGTAACATTTGGTCAGACTTCAAGGCTTTCAATCCTGGAACAGAGGCAGAGTCTTCCAATATTCAGGCTGAAGAATGAGCTTATCGAAGCTGT ]
[+] EMBL CF322878 [ TCAATCCTGGAACAGAGGCAGAGTCTTCCAATATTCAGGCTGAAGAATGAGCTTATCGAAGCTGTTCGTGACAATCAAGTTCTGGTTGTTATTGGTGAGACCGGTTCAGGGAAAACAACCCAGGTTACACAGTACCTTGCTGAGGCAGGCTATATTACGAGGGGGAAAATTGCATGTACTCAGCCTCGCAGGGTCGCTGCAGAGTCAGTTGCCAAGCGAGTATCGGAAGAGTTTGGTTGCCGATTGGGAGAGGAAGTTGGTTACTCAATACGTTTTGATGATCACACTGGACCAGATACTGTCATTAAGTACATGACGGATGGCATGCTCCTTCGTGAAATTTTGTTGGACACTGACCTCTCTAGTTACTCCGTGGTCATGCTTGATGAGGCACATGAGAGGACTATATATACAGACATTCTCTTTGCCTTACTCAAGAAGCTAATTAGGCGTAGAACTGATCTCAAGTTAATAGTCACTTCCGCCACTCTTGATGCAGAGAAGTTCTCTGGATATTTCTTCGATTGTAATATTTTTACAATTCCCGGAAG ACATATCCTGTGGAGATACTCTATTCAAAACAGCCAGAGAGTGATTACATGCATGCTGCGCTGCTCACAGTATCACAGATCCATCTG ]
[+] EMBL AK058622 [ CAACTTGGGGGAGACGGTCCTCAATATGAAGGCAATGGGAATAAACGATCTACTGTCATTTGACTTCATGGACCCCCCAGCTCCTCAATCACTCATAACTGCAATGGAACAACTGTACAACCTTGGTGCCTTAGATGAGGAGGGTCTCCTTACAAGAGTAGGGAGAAGGATGGCGGAGTTTCCACAAGAACCACCACTTTCAAAGATGCTCCTTGCTAGTGTGGACCTCGGATGCAGTGATGAAATACTGACCATCATTGCGATGATTCAAACTGGGAACATATTCTACCGGCCAAGGGAAAAACAAGCTCAAGCCGATCGGAAAAGGGGCAACTTTTTCCAACCAGAAGGGGATCACCTCACCCTGCTCACCGTGTATCAGGCGTGGAAGGCAAAGCAGTTTTCAGGTCCATGGTGCTATGAGAATTTTGTCCAGCTAACATCCCTGAGGAGAGCACAGGATGTCAGAAAACAGCTCCTTGAGATTATGGACAAGTATAAGCTTAACGTTGTCTCTGCAGGGAATGATCTCACCAAGGTGAGGAAAGCCATCACTGCTGGCTTCTTCTTCCACGCTGCCAGGAAGGATCCCCAGGGAGGATACAGGACCATTGCTGATCATCAGCAGGTGTATATCCACCCTGCCAGCGCTCTCTTCCAGCAGCAACCAGAGTGGGTTATCTATCATGAAGTCGTCATGACCACAAAAGAGTACATGAGGGAGGTGACAGCCATTGACCCAAGATGGCTTGTTGAACTGGCACCGAGGTTCTACAGATCTGCAGACCCAACGAAGATCAGTAAGCGGAAGCGCCAAGAAAGGATTGAGCCTCTGTATGACAGATACAACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTTTACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGGGATATT ]
[+] EMBL CA766326 [ cAAGGGGCAACTTTTTCCAACCAGAAGGGGATCACCTCACCCTGCTCACCGTGTATCAGGCGTGGAAGGCAAAGCAGTTTTCAGGTCCATGGTGCTATGAGAATTTTGTCCAGTTAACATCCCTGAGGAGAGCACAGGATGTCAGAAAACAGCTCCTTGAGATTATGGACAAGTATAAGCTTAACGTTGTCTCTGCAGGGAATGATCTCACCAAGGTGAGGAAAGCTATCACTGCTGGCTTCTTCTTCCACGCTGCCAGGAAGGATCCCCAGGGAGGATACAGGACCATTGCTGATCATCAGCAGGTGTATATCCACCCTGCCAGCGCTCTCTTCCAGCAGCAACCAGAGTGGGTTATCTATCATGAAGTCGTCATGACCACAAAAGAGTACATGAGGGAGGTGACAGCCATTGACCCAAGGTGGCTTGTTGAACTGGCACCGAGGTTCTACAGATCTGCAGACCCAACGAAGATCAGTAAGCGGAAGCGCCAAGAAAGGATTGAGCCTCTGTATGACAGATACAACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTTTACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAa ]
[+] EMBL AU164468 [ TCTGTATGACAGATACAACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTTTACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAGCTTGACCATCTTGTTTCTCTTTTCATTTAGGAAGCAGATGCTGAATGAGGTTGACAATTTTGACTGTTTCTATATTAGTTGATCCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12250#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 331 fasta sequence
[CCCATTGNCCCAAAAATGGCTTTGTTGAACTGGCACCGANGGTTCTACAGATCTGCAGACCCAACGAAGATCAGTAAGCGGAAGCNCCAAGAAAGGATTGAGCCTCTGTATGACAGATACAACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTTTACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAGCTTGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C99689 [CCCATTGNCCCAAAAATGGCTTTGTTGAACTGGCACCGANGGTTCTACAGATCTGCAGACCCAACGAAGATCAGTAAGCGGAAGCNCCAAGAAAGGATTGAGCCTCTGTATGACAGATACAACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTTTACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAGCTTGACCAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL C97413 [ gnTCTGCAGNCCCAACGAAGATCAGTAAGCGGAAGCGCCAAGAAAGGATTGNGCCTCTGTNTGACAGNTACAACGNGCCAAACTCATGGCGCCTCAGCAAGCGCCGNGGGTAATTTGTCTGTATATAGTTTTTACTTCCNCTNTAGCTGCTCTTTATGCAATGTAAGCTGNGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12250#0 TTCGACACGCGAAAACCAACCCAATGGTGGCGGCCAAGGTGTCGACCCCTGCCGGCGGCG 60
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 CGGTGCGCGACGGGCTCCGGCGGCTCACGCAGCTCTCGCTCGTCTCCAAGGTCTGCTCGG 120
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 AGCTGGAGGCGCACCTCGGCGTCGGCGACCGCGTCCTCGCGGAGTTCATCGTCGACCTGG 180
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 GCCGCGCATCCCCTTCCGTCGCAGACTTCGACGCCAAGCTCAAGGCCCACGGCGCTGACC 240
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 TGCCGGACTACCTCGCGCGCACCCTCCACACCGTCATCCACGCCATCCCTACCCACGCCG 300
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 ACGACGCCCCCGCCCCCGCCCCCCAAAACCCTGCCTCCCGTGGCACCGGTGCAAGGGTTT 360
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 GCGGGAAGGACAAGGCGGAGGAGCGGGTGAGAGATGGGGATCCGGGGCTGTACCAGGTGT 420
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 GCCGCGGGAAGGTCACCGGCCTGGCGGACGCCGGGTGCTTCGTCCGCCTCGACGACGCGC 480
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 GCGGCCGCGAGGGGCTCGTCCATGTCTCCGAGATGCCCGGCCGCCGAATCGCCGTGAAGC 540
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 GTGGGCAGGAGGTGTTCGTCAAGATCGTGTCCGTGCAGGGGCGCAATCTGGGGCTGTCGA 600
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 TGCGGGACGTCGACCAGGACACGGGGAAGGACCTCCTACCGTTGCAGCGTGCTAGGGGGG 660
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 AGGATGATGTGCCGAGGCCGATGGCGAATCCGTGGACCGATCGAGCCGCCGCCACTAGGA 720
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 GAAGGACGGGGGTGTCAGGAATTGTGATCCCCGAGGACAACCAGACTGGCACGGCATCGT 780
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 CGCGGCGGCCGATTAGGCGGATGAGCTCGCCGGAGAGGTGGGAAATGAAGCAGCTGATTG 840
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 CTTCAGGGGTTCTGAATGCGAAGGATTACCCGGCGTTCGATGATGAGGATAGCGAGGGGA 900
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 TGAATTACCAGGAGGAAGGTGTGGAGGAGGAGCTTGAGATTGAGCTTAATGAAGATGAGC 960
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 CAGCATTCTTGCGGGGACAGGGTCGGTCCACAATTGATGTGTCCCCAGTGAGGATTTCCA 1020
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 CGAACCCTGATGGGTCGCTGAGTCGAGCGGCGGTTCTGCAGAGTGCGCTTATCAAGGAGT 1080
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 GGCGTGATATCAGGAACGAGGATCAAAGAGCATTGGTTGACTCCATCCCAAAGGATCTGA 1140
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 ATCGGCCATGGGAGGATCCTGTGCCTGAGGTCGGTGGGCGGTATCTCGCACAAGAGCTAC 1200
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 GCGGTGTTGGATTATCTGCTGAAAGCATGCCAGAGTGGAAGAAAGAGGCTTATGGGAAGA 1260
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 CTGTAACATTTGGTCAGACTTCAAGGCTTTCAATCCTGGAACAGAGGCAGAGTCTTCCAA 1320
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 TATTCAGGCTGAAGAATGAGCTTATCGAAGCTGTTCGTGACAATCAAGTTCTGGTTGTTA 1380
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 TTGGTGAGACCGGTTCAGGGAAAACAACCCAGGTTACACAGTACCTTGCTGAGGCAGGCT 1440
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 ATATTACGAGGGGGAAAATTGCATGTACTCAGCCTCGCAGGGTCGCTGCAGAGTCAGTTG 1500
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 CCAAGCGAGTATCGGAAGAGTTTGGTTGCCGATTGGGAGAGGAAGTTGGTTACTCAATAC 1560
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 GTTTTGATGATCACACTGGACCAGATACTGTCATTAAGTACATGACGGATGGCATGCTCC 1620
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 TTCGTGAAATTTTGTTGGACACTGACCTCTCTAGTTACTCCGTGGTCATGCTTGATGAGG 1680
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 CACATGAGAGGACTATATATACAGACATTCTCTTTGCCTTACTCAAGAGGCTAATTAGGC 1740
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 GTAGAACTGATCTCAAGTTAATAGTCACTTCCGCCACTCTTGATGCAGAGAAGTTCTCTG 1800
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 GATATTTCTTCGATTGTAATATTTTTACAATTCCCGGAAGAACATATCCTGTGGAGATAC 1860
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 TCTATTCAAAACAGCCAGAGAGTGATTACATGCATGCTGCGCTGCTCACAGTATCACAGA 1920
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 TCCATCTGACTGAACCTGAAGGTGATATCCTCTTGTTCTTAACTGGCCAGGAAGAGATTG 1980
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 ATCATGCCTGTCAGTGTCTCTATGAGAGGATGAAGTCTCTAGGTAGGAATGTACCAGAAT 2040
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 TGCTGATATATGCAGTGTACAGTGCTCAGCCAGCTGAAATGCAGTCAAAGATCTTTGAAC 2100
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 CTACTCCTCCTGGGAAGAGGAAAGTGGTCGTGGCCACTAACATAGCGGAAGCATCTATTA 2160
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 CAATAGATGGGATATATTATGTAATTGACCCAGGATTTGCAAAACTCAATGTGTATAACC 2220
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 CAAAACAAGGGCTGGATTCACTGATCATCACACCGATATCTCAAGCATCAGCTAAACAGA 2280
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 GGGCAGGGCGTGCTGGACGTACAGGCCCAGGAAAGTGTTATCGTCTATACACTGAAAGTG 2340
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 CCTATCGCAACGAAATGCCCCCCACAACTACTCCAGAAATTCAGAGGATCAACTTGGGGG 2400
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 AGACGGTCCTCAATATGAAGGCAATGGGAATAAACGATCTACTGTCATTTGACTTCATGG 2460
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 ACCCCCCAGCTCCTCAATCACTCATAACTGCAATGGAACAACTGTACAACCTTGGTGCCT 2520
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 TAGATGAGGAGGGTCTCCTTACAAGAGTAGGGAGAAGGATGGCGGAGTTTCCACAAGAAC 2580
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 CACCACTTTCAAAGATGCTCCTTGCTAGTGTGGACCTCGGATGCAGTGATGAAATACTGA 2640
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 CCATCATTGCGATGATTCAAACTGGGAACATATTCTACCGGCCAAGGGAAAAACAAGCTC 2700
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 AAGCCGATCGGAAAAGGGGCAACTTTTTCCAACCAGAAGGGGATCACCTCACCCTGCTCA 2760
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 CCGTGTATCAGGCGTGGAAGGCAAAGCAGTTTTCAGGTCCATGGTGCTATGAGAATTTTG 2820
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 TCCAGCTAACATCCCTGAGGAGAGCACAGGATGTCAGAAAACAGCTCCTTGAGATTATGG 2880
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 ACAAGTATAAGCTTAACGTTGTCTCTGCAGGGAATGATCTCACCAAGGTGAGGAAAGCCA 2940
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 TCACTGCTGGCTTCTTCTTCCACGCTGCCAGGAAGGATCCCCAGGGAGGATACAGGACCA 3000
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 TTGCTGATCATCAGCAGGTGTATATCCACCCTGCCAGCGCTCTCTTCCAGCAGCAACCAG 3060
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 AGTGGGTTATCTATCATGAAGTCGTCATGACCACAAAAGAGTACATGAGGGAGGTGACAG 3120
consensus_12250#1 -----------------------------------------------------------C 1
consensus_12250#0 CCATTGACCCAAGA-TGGCTT-GTTGAACTGGCACCGAGG-TTCTACAGATCTGCAGACC 3177
consensus_12250#1 CCATTGNCCCAAAAATGGCTTTGTTGAACTGGCACCGANGGTTCTACAGATCTGCAGACC 61
****** ***** * ****** **************** * *******************
consensus_12250#0 CAACGAAGATCAGTAAGCGGAAGCGCCAAGAAAGGATTGAGCCTCTGTATGACAGATACA 3237
consensus_12250#1 CAACGAAGATCAGTAAGCGGAAGCNCCAAGAAAGGATTGAGCCTCTGTATGACAGATACA 121
************************ ***********************************
consensus_12250#0 ACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTT 3297
consensus_12250#1 ACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTT 181
************************************************************
consensus_12250#0 TACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAA 3357
consensus_12250#1 TACTTCCACTATAGCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAA 241
************************************************************
consensus_12250#0 TATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAGCTTGACCATCTTGTTTCT 3417
consensus_12250#1 TATACTCTGCTGATAAGTTCCAATACATATTGGGATATTAAGCTTGACCAAAAAAAAAAA 301
**************************************************
consensus_12250#0 CTTTTCATTTAGGAAGCAGATGCTGAATGAGGTTGACAATTTTGACTGTTTCTATATTAG 3477
consensus_12250#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 331
* * ** * * ** *
consensus_12250#0 TTGATCCTGAAACATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3537
consensus_12250#1 ------------------------------------------------------------
consensus_12250#0 AAAAAA 3543
consensus_12250#1 ------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||