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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 807 fasta sequence
[GACGGTGGTGGTGGTCGGGGTGGACGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGGGCAGCGGCGGCGCCGAGCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTCGGCTTCGGCGCCGGCCCCGGTACATCACCCGCCTCCTTGAATTGATCTCGATGAAATTTATTCTGAGCTGACTCGTTGATGGCGTCAGGGTCTGGAGAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGACGGCGGAGGATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCGGTAATCGATCGATCAAACTCTCTCACTCTCGCAGATTCTGCAGATTTCCGCACAGGGTTTCTGTGGCTAAACGGGCACCTGATTATTGGCATTATTGATGCATTTGGTTGCAGATGCACGCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTGTGCAACGCGGTGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAATTTCGGGTGTGAGCTGAGCCGAGCAATGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCTTGCGTTCTGTACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGTATCGAA]
[+] EMBL AK073356 [GACGGTGGTGGTGGTCGGGGTGGACGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGGGCAGCGGCGGCGCCGAGCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTCGGCTTCGGCGCCGGCCCCGGTACATCACCCGCCTCCTTGAATTGATCTCGATGAAATTTATTCTGAGCTGACTCGTTGATGGCGTCAGGGTCTGGAGAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGACGGCGGAGGATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCGGTAATCGATCGATCAAACTCTCTCACTCTCGCAGATTCTGCAGATTTCCGCACAGGGTTTCTGTGGCTAAACGGGCACCTGATTATTGGCATTATTGATGCATTTGGTTGCAGATGCACGCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTGTGCAACGCGGTGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAATTTCGGGTGTGAGCTGAGCCGAGCAATGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCTTGCGTTCTGTACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGTATCGAA]
consensusID : consensus_12251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 763 fasta sequence
[CAGTTCGAGTCAGAGCTATCTAACCAATCCATCCATCGAGCAATTGTTGATCCGTCTGTGAATTGTGATGGCGGCGNCGGAGGGGGAGCAGGGGAAGACGGTGGTGGTGGTCGGGGTGGACGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGGGCAGCGGCGGCGCCGA-GCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTC-GGCTTCGGCGCCGGCCCCGGGTCTGGAGAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGACGGCGGAGGATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCGATGCACGCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTGTGCAACGCGG-TGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAATTTCGGGTGTGAGCTGAGCCGAGCAATGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCTTGCGTTCTGTACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGTATCGAAATGTTTGTGCATCAGCCTATGCTTGCAGCCTTGTTATAAAAA]
[+] EMBL OSS12319A [CAGTTCGAGTCAGAGCTATCTAACCAATCCATCCATCGAGCAATTGTTGATCCGTCTGTGAATTGTGATGGCGGCGNCGGAGGGGGAGCAGGGGAAGACGGTGGTGGTGGTCGGGGTGGACGACATCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGNNCAGCNNCGGCGCCGAGGCTCGTCATCGTCCACGGCAAGCCCTCGCCGTNCTCCGTCGTC GGCTTCGGCGNCGGNCCCGGGTNTGGAGAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGAC ]
[+] EMBL AK064061 [ GACGGTGGTGGTGGTCGGGGTGGACGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGGGCAGCGGCGGCGCCGA GCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTC GGCTTCGGCGCCGGCCCCGGGTCTGGAGAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGACGGCGGAGGATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCGATGCACGCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTGTGCAACGCGG TGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAATTTCGGGTGTGAGCTGAGCCGAGCAATGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCTTGCGTTCTGTACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGTATCGAA ]
[+] EMBL AF491815 [ GACGGTGGTGGTGGTCGGGGTGGACGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGGGCGGCGGCGGCGCCGA GCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTC GGCTTCGGCGCCGGCCCCGGGTCTGGAGAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGACGGCGGAGGATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCGATGCACGCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTGTGCAACGCGG TGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAATTT ]
[+] EMBL AY224503 [ GACGGTGGTGGTGGTCGGGGTGGACGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGGGCAGCGGCGGCGCCGA GCTCGTCATCGTCCACGCCAAGCCCTCGCCGTYCTCCGTYGTS GGCTTCGGCGCCGGCCCCG GAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGACGGCGGAGGATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCG GCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTGTGCAACGCGG TGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAA ]
[+] EMBL AU064168 [ GACGGTGGTGGTGGTCGGGGTGGACGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGGGCAGCGGCGGCGCCGA GCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTC GGCTTCGGCGCCGGCCCCGGGTCTGGAGAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGACGGCGGAGGATTTCGTCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCGATGAACGCGTTNATCGAGGTGATCGAAGGGGAG CCANGTACGTGCTTTNCAACGCGGTTGGAGAAG ACANCGCGGGGTTNCT ]
[+] EMBL OSS12459A [ GACGGTGGTGGTGGTCGGGGTGGACGACAGCNAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGGGCAGCGGCGGCGCCGA GCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTC GGCTTCGGCGCCGGCCCNGGGTCTTGAGAGGTGGTGAGATAn ]
[+] EMBL AU094307 [ TGGT GTCGGGGTGGACGCAAGCGAGCNCAGCAATTACGCG TTGAGTGGACGATGCAGCACCTGCCGACCGGCATGNCGGGCANCGGCGGCGCCGA GCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTCGGGCTTCGGCGCCGGCCCCGGGTCTGAAGAGGTGGTGAGATACGTGAAGGCCGACCTGCGCAAGACGGCGGAGGATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCGATGCACGCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTGTGCAACGCGG TGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAATTTCGGGTGTGAGCTGAGCCGAGCAATGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCTTGCGTTCTGTACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGTATCGAAATGTTTGTGCATCAGCCTATGCTTGCAGCCTTGTTATAAAAA]
[+] EMBL AU173997 [ GCAAGACGGCGGAGGATGTCGTCGAGAAGGCGCGCCGCCTNTGCATCGCCAACGCGATGCACGCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTGTGCAACGCGG TGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAATTTCGGGTGTGAGCTGAGCCGAGCAATGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCTTGCGTTCTGTACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGTATCGAAATGTTTGTGCATCAaaaa ]
consensusID : consensus_12251#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence
[GGNNNTTTTTTTAAACNAACCCNNCCCCNCCCCCTNTTTNTTTTTTTTTNCCCCCCCCCCCCTGNGGGGNGGGGGGNAAAAGGGGGCCNAACCNNNCNAAAACGGCGGGGGGATTTTTTTGAGANGGGGNCCNCCTTNGGNNTCCCCAAAGGGGANGCAAGGCGTTAATNGAGGTAATNGAAGGGGGAGCCCAGGAACGTGTTGNGCAACGCGGNGGAGAAGCACAGCGCGGGGTTGTTNTTNTTCGGCANCCATGGTNACGGCGCAATCAAGAGGCCTTCCTGGGGAGCGTCAGCGANTANTGCGCCCACCACGCGCAATGNTCCGTCATGATNGTCAAGCAACCCAAGGCCAAGCGCTTTNGTGCCGAGACCGCGTGAAAAACACCAAATTTCGGGTGTGAGCTGAGCCGAGCAANGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCTTGCGTTCTGNACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGTATCGAAATGTTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AA753827 [GGNNNTTTTTTTAAACNAACCCNNCCCCNCCCCCTNTTTNTTTTTTTTTNCCCCCCCCCCCCTGNGGGGNGGGGGGNAAAAGGGGGCCNAACCNNNCNAAAACGGCGGGGGGATTTTTTTGAGANGGGGNCCNCCTTNGGNNTCCCCAAAGGGGANGCAAGGCGTTAATNGAGGTAATNGAAGGGGGAGCCCAGGAACGTGTTGNGCAACGCGGNGGAGAAGCACAGCGCGGGGTTGTTNTTNTTCGGCANCCATGGTNACGGCGCAATCAAGAGGCCTTCCTGGGGAGCGTCAGCGANTANTGCGCCCACCACGCGCAATGNTCCGTCATGATNGTCAAGCAACCCAAGGCCAAGCGCTTTNGTGCCGAGACCGCGTGAAAAACACCAAATTTCGGGTGTGAGCTGAGCCGAGCAANGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCTTGCGTTCTGNACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGTATCGAAATGTTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12251#0 ------------------------------------------------------------
consensus_12251#1 CAGTTCGAGTCAGAGCTATCTAACCAATCCATCCATCGAGCAATTGTTGATCCGTCTGTG 60
consensus_12251#2 ------------------------------------------------------------
consensus_12251#0 ------------------------------------GACGGTGGTGGTGGTCGGGGTGGA 24
consensus_12251#1 AATTGTGATGGCGGCGNCGGAGGGGGAGCAGGGGAAGACGGTGGTGGTGGTCGGGGTGGA 120
consensus_12251#2 ------------------------------------------------------------
consensus_12251#0 CGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCAT 84
consensus_12251#1 CGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCAT 180
consensus_12251#2 ------------------------------------------------------------
consensus_12251#0 GGCGGGCAGCGGCGGCGCCGAGCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGT 144
consensus_12251#1 GGCGGGCAGCGGCGGCGCCGAGCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGT 240
consensus_12251#2 -----------------------GGNNNTTTTTTTAAACNAACCCNNCCCCNCCCCCTNT 37
* * * * ** ** * ** ** * *
consensus_12251#0 CGTCGGCTTCGGCGCCGGCCCCGGTACATCACCCGCCTCCTTGAATTGATCTCGATGAAA 204
consensus_12251#1 CGTCGGCTTCGGCGCCGGCCCCGG------------------------------------ 264
consensus_12251#2 TTNTTTTTTTTTNCCCCCCCCC-------------------------------------- 59
** ** ****
consensus_12251#0 TTTATTCTGAGCTGACTCGTTGATGGCGTCAGGGTCTGGAGAGGTGGTGAGATACGTGGA 264
consensus_12251#1 ---------------------------------GTCTGGAGAGGTGGTGAGATACGTGGA 291
consensus_12251#2 ----------------------------------CCCTGNGGGGNGGGGGGNAAAAGGGG 85
* * * ** ** * * * **
consensus_12251#0 GGCCGACCTGCGCAAGACGGCGGAGG-ATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCG 323
consensus_12251#1 GGCCGACCTGCGCAAGACGGCGGAGG-ATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCG 350
consensus_12251#2 GCCNAACCNNNCNAAAACGGCGGGGGGATTTTTTTGAGANGGGGNCCNCCTTNGGNNTCC 145
* * *** ** ******* ** ** * * **** ** * * * * * **
consensus_12251#0 CCAACGCGGTAATCGATCGATCAAACTCTCTCACTCTCGCAGATTCTGCAGATTTCCGCA 383
consensus_12251#1 CCAACGCG---------------------------------------------------- 358
consensus_12251#2 CCAAAGGGG--------------------------------------------------- 154
**** * *
consensus_12251#0 CAGGGTTTCTGTGGCTAAACGGGCACCTGATTATTGGCATTATTGATGCATTTGGTTGCA 443
consensus_12251#1 ------------------------------------------------------------
consensus_12251#2 ------------------------------------------------------------
consensus_12251#0 GATGCACG-CGTTGATCGAGGTGATCGAAGGGG-AGCCCAGGTACGTGCTGTGCAACGCG 501
consensus_12251#1 -ATGCACG-CGTTGATCGAGGTGATCGAAGGGG-AGCCCAGGTACGTGCTGTGCAACGCG 415
consensus_12251#2 -ANGCAAGGCGTTAATNGAGGTAATNGAAGGGGGAGCCCAGGAACGTGTTGNGCAACGCG 213
* *** * **** ** ***** ** ******* ******** ***** ** ********
consensus_12251#0 GTGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAG 561
consensus_12251#1 GTGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAG 475
consensus_12251#2 GNGGAGAAGCACAGCGCGGGGTTGTTNTTNTTCGGCANCCATGGTNACGGCGCAATCAAG 273
* ********************** * * ****** ****** **************
consensus_12251#0 AGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATG 621
consensus_12251#1 AGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATG 535
consensus_12251#2 AGG-CCTTCCTGGGGAGCGTCAGCGANTANTGCGCCCACCACGCGCAATGNTCCGTCATG 332
*** ********************** ** ***************** ** *********
consensus_12251#0 ATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAAT 681
consensus_12251#1 ATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAAT 595
consensus_12251#2 ATNGTCAAGCAACCCAAGGCCAAGCGCTTTNGTGCCGAGACCGCGTGAAAAACACCAAAT 392
** ************************* * *****************************
consensus_12251#0 TTCGGGTGTGAGCTGAGCCGAGCAATGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCT 741
consensus_12251#1 TTCGGGTGTGAGCTGAGCCGAGCAATGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCT 655
consensus_12251#2 TTCGGGTGTGAGCTGAGCCGAGCAANGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCT 452
************************* **********************************
consensus_12251#0 TGCGTTCTGTACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGT 801
consensus_12251#1 TGCGTTCTGTACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGT 715
consensus_12251#2 TGCGTTCTGNACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGT 512
********* **************************************************
consensus_12251#0 ATCGAA------------------------------------------------------ 807
consensus_12251#1 ATCGAAATGTTTGTGCATCAGCCTATGCTTGCAGCCTTGTTATAAAAA------------ 763
consensus_12251#2 ATCGAAATGTTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 572
******
consensus_12251#0 ---
consensus_12251#1 ---
consensus_12251#2 AAA 575
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||