These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 807 fasta sequence [GACGGTGGTGGTGGTCGGGGTGGACGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGGGCAGCGGCGGCGCCGAGCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTCGGCTTCGGCGCCGGCCCCGGTACATCACCCGCCTCCTTGAATTGATCTCGATGAAATTTATTCTGAGCTGACTCGTTGATGGCGTCAGGGTCTGGAGAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGACGGCGGAGGATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCGGTAATCGATCGATCAAACTCTCTCACTCTCGCAGATTCTGCAGATTTCCGCACAGGGTTTCTGTGGCTAAACGGGCACCTGATTATTGGCATTATTGATGCATTTGGTTGCAGATGCACGCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTGTGCAACGCGGTGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAATTTCGGGTGTGAGCTGAGCCGAGCAATGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCTTGCGTTCTGTACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGTATCGAA] [+] EMBL AK073356 [GACGGTGGTGGTGGTCGGGGTGGACGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGGGCAGCGGCGGCGCCGAGCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTCGGCTTCGGCGCCGGCCCCGGTACATCACCCGCCTCCTTGAATTGATCTCGATGAAATTTATTCTGAGCTGACTCGTTGATGGCGTCAGGGTCTGGAGAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGACGGCGGAGGATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCGGTAATCGATCGATCAAACTCTCTCACTCTCGCAGATTCTGCAGATTTCCGCACAGGGTTTCTGTGGCTAAACGGGCACCTGATTATTGGCATTATTGATGCATTTGGTTGCAGATGCACGCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTGTGCAACGCGGTGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAATTTCGGGTGTGAGCTGAGCCGAGCAATGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCTTGCGTTCTGTACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGTATCGAA] consensusID : consensus_12251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 763 fasta sequence [CAGTTCGAGTCAGAGCTATCTAACCAATCCATCCATCGAGCAATTGTTGATCCGTCTGTGAATTGTGATGGCGGCGNCGGAGGGGGAGCAGGGGAAGACGGTGGTGGTGGTCGGGGTGGACGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGGGCAGCGGCGGCGCCGA-GCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTC-GGCTTCGGCGCCGGCCCCGGGTCTGGAGAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGACGGCGGAGGATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCGATGCACGCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTGTGCAACGCGG-TGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAATTTCGGGTGTGAGCTGAGCCGAGCAATGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCTTGCGTTCTGTACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGTATCGAAATGTTTGTGCATCAGCCTATGCTTGCAGCCTTGTTATAAAAA] [+] EMBL OSS12319A [CAGTTCGAGTCAGAGCTATCTAACCAATCCATCCATCGAGCAATTGTTGATCCGTCTGTGAATTGTGATGGCGGCGNCGGAGGGGGAGCAGGGGAAGACGGTGGTGGTGGTCGGGGTGGACGACATCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGNNCAGCNNCGGCGCCGAGGCTCGTCATCGTCCACGGCAAGCCCTCGCCGTNCTCCGTCGTC GGCTTCGGCGNCGGNCCCGGGTNTGGAGAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGAC ] [+] EMBL AK064061 [ GACGGTGGTGGTGGTCGGGGTGGACGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGGGCAGCGGCGGCGCCGA GCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTC GGCTTCGGCGCCGGCCCCGGGTCTGGAGAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGACGGCGGAGGATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCGATGCACGCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTGTGCAACGCGG TGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAATTTCGGGTGTGAGCTGAGCCGAGCAATGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCTTGCGTTCTGTACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGTATCGAA ] [+] EMBL AF491815 [ GACGGTGGTGGTGGTCGGGGTGGACGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGGGCGGCGGCGGCGCCGA GCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTC GGCTTCGGCGCCGGCCCCGGGTCTGGAGAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGACGGCGGAGGATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCGATGCACGCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTGTGCAACGCGG TGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAATTT ] [+] EMBL AY224503 [ GACGGTGGTGGTGGTCGGGGTGGACGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGGGCAGCGGCGGCGCCGA GCTCGTCATCGTCCACGCCAAGCCCTCGCCGTYCTCCGTYGTS GGCTTCGGCGCCGGCCCCG GAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGACGGCGGAGGATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCG GCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTGTGCAACGCGG TGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAA ] [+] EMBL AU064168 [ GACGGTGGTGGTGGTCGGGGTGGACGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGGGCAGCGGCGGCGCCGA GCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTC GGCTTCGGCGCCGGCCCCGGGTCTGGAGAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGACGGCGGAGGATTTCGTCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCGATGAACGCGTTNATCGAGGTGATCGAAGGGGAG CCANGTACGTGCTTTNCAACGCGGTTGGAGAAG ACANCGCGGGGTTNCT ] [+] EMBL OSS12459A [ GACGGTGGTGGTGGTCGGGGTGGACGACAGCNAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCATGGCGGGCAGCGGCGGCGCCGA GCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTC GGCTTCGGCGCCGGCCCNGGGTCTTGAGAGGTGGTGAGATAn ] [+] EMBL AU094307 [ TGGT GTCGGGGTGGACGCAAGCGAGCNCAGCAATTACGCG TTGAGTGGACGATGCAGCACCTGCCGACCGGCATGNCGGGCANCGGCGGCGCCGA GCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTCGGGCTTCGGCGCCGGCCCCGGGTCTGAAGAGGTGGTGAGATACGTGAAGGCCGACCTGCGCAAGACGGCGGAGGATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCGCCAACGCGATGCACGCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTGTGCAACGCGG TGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAATTTCGGGTGTGAGCTGAGCCGAGCAATGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCTTGCGTTCTGTACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGTATCGAAATGTTTGTGCATCAGCCTATGCTTGCAGCCTTGTTATAAAAA] [+] EMBL AU173997 [ GCAAGACGGCGGAGGATGTCGTCGAGAAGGCGCGCCGCCTNTGCATCGCCAACGCGATGCACGCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTGTGCAACGCGG TGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAATTTCGGGTGTGAGCTGAGCCGAGCAATGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCTTGCGTTCTGTACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGTATCGAAATGTTTGTGCATCAaaaa ] consensusID : consensus_12251#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [GGNNNTTTTTTTAAACNAACCCNNCCCCNCCCCCTNTTTNTTTTTTTTTNCCCCCCCCCCCCTGNGGGGNGGGGGGNAAAAGGGGGCCNAACCNNNCNAAAACGGCGGGGGGATTTTTTTGAGANGGGGNCCNCCTTNGGNNTCCCCAAAGGGGANGCAAGGCGTTAATNGAGGTAATNGAAGGGGGAGCCCAGGAACGTGTTGNGCAACGCGGNGGAGAAGCACAGCGCGGGGTTGTTNTTNTTCGGCANCCATGGTNACGGCGCAATCAAGAGGCCTTCCTGGGGAGCGTCAGCGANTANTGCGCCCACCACGCGCAATGNTCCGTCATGATNGTCAAGCAACCCAAGGCCAAGCGCTTTNGTGCCGAGACCGCGTGAAAAACACCAAATTTCGGGTGTGAGCTGAGCCGAGCAANGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCTTGCGTTCTGNACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGTATCGAAATGTTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AA753827 [GGNNNTTTTTTTAAACNAACCCNNCCCCNCCCCCTNTTTNTTTTTTTTTNCCCCCCCCCCCCTGNGGGGNGGGGGGNAAAAGGGGGCCNAACCNNNCNAAAACGGCGGGGGGATTTTTTTGAGANGGGGNCCNCCTTNGGNNTCCCCAAAGGGGANGCAAGGCGTTAATNGAGGTAATNGAAGGGGGAGCCCAGGAACGTGTTGNGCAACGCGGNGGAGAAGCACAGCGCGGGGTTGTTNTTNTTCGGCANCCATGGTNACGGCGCAATCAAGAGGCCTTCCTGGGGAGCGTCAGCGANTANTGCGCCCACCACGCGCAATGNTCCGTCATGATNGTCAAGCAACCCAAGGCCAAGCGCTTTNGTGCCGAGACCGCGTGAAAAACACCAAATTTCGGGTGTGAGCTGAGCCGAGCAANGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCTTGCGTTCTGNACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGTATCGAAATGTTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12251#0 ------------------------------------------------------------ consensus_12251#1 CAGTTCGAGTCAGAGCTATCTAACCAATCCATCCATCGAGCAATTGTTGATCCGTCTGTG 60 consensus_12251#2 ------------------------------------------------------------ consensus_12251#0 ------------------------------------GACGGTGGTGGTGGTCGGGGTGGA 24 consensus_12251#1 AATTGTGATGGCGGCGNCGGAGGGGGAGCAGGGGAAGACGGTGGTGGTGGTCGGGGTGGA 120 consensus_12251#2 ------------------------------------------------------------ consensus_12251#0 CGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCAT 84 consensus_12251#1 CGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCACCTGGCGAGCGGCAT 180 consensus_12251#2 ------------------------------------------------------------ consensus_12251#0 GGCGGGCAGCGGCGGCGCCGAGCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGT 144 consensus_12251#1 GGCGGGCAGCGGCGGCGCCGAGCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGT 240 consensus_12251#2 -----------------------GGNNNTTTTTTTAAACNAACCCNNCCCCNCCCCCTNT 37 * * * * ** ** * ** ** * * consensus_12251#0 CGTCGGCTTCGGCGCCGGCCCCGGTACATCACCCGCCTCCTTGAATTGATCTCGATGAAA 204 consensus_12251#1 CGTCGGCTTCGGCGCCGGCCCCGG------------------------------------ 264 consensus_12251#2 TTNTTTTTTTTTNCCCCCCCCC-------------------------------------- 59 ** ** **** consensus_12251#0 TTTATTCTGAGCTGACTCGTTGATGGCGTCAGGGTCTGGAGAGGTGGTGAGATACGTGGA 264 consensus_12251#1 ---------------------------------GTCTGGAGAGGTGGTGAGATACGTGGA 291 consensus_12251#2 ----------------------------------CCCTGNGGGGNGGGGGGNAAAAGGGG 85 * * * ** ** * * * ** consensus_12251#0 GGCCGACCTGCGCAAGACGGCGGAGG-ATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCG 323 consensus_12251#1 GGCCGACCTGCGCAAGACGGCGGAGG-ATGTCGTCGAGAAGGCGCGCCGCCTCTGCATCG 350 consensus_12251#2 GCCNAACCNNNCNAAAACGGCGGGGGGATTTTTTTGAGANGGGGNCCNCCTTNGGNNTCC 145 * * *** ** ******* ** ** * * **** ** * * * * * ** consensus_12251#0 CCAACGCGGTAATCGATCGATCAAACTCTCTCACTCTCGCAGATTCTGCAGATTTCCGCA 383 consensus_12251#1 CCAACGCG---------------------------------------------------- 358 consensus_12251#2 CCAAAGGGG--------------------------------------------------- 154 **** * * consensus_12251#0 CAGGGTTTCTGTGGCTAAACGGGCACCTGATTATTGGCATTATTGATGCATTTGGTTGCA 443 consensus_12251#1 ------------------------------------------------------------ consensus_12251#2 ------------------------------------------------------------ consensus_12251#0 GATGCACG-CGTTGATCGAGGTGATCGAAGGGG-AGCCCAGGTACGTGCTGTGCAACGCG 501 consensus_12251#1 -ATGCACG-CGTTGATCGAGGTGATCGAAGGGG-AGCCCAGGTACGTGCTGTGCAACGCG 415 consensus_12251#2 -ANGCAAGGCGTTAATNGAGGTAATNGAAGGGGGAGCCCAGGAACGTGTTGNGCAACGCG 213 * *** * **** ** ***** ** ******* ******** ***** ** ******** consensus_12251#0 GTGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAG 561 consensus_12251#1 GTGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAG 475 consensus_12251#2 GNGGAGAAGCACAGCGCGGGGTTGTTNTTNTTCGGCANCCATGGTNACGGCGCAATCAAG 273 * ********************** * * ****** ****** ************** consensus_12251#0 AGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATG 621 consensus_12251#1 AGGGCCTTCCTGGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATG 535 consensus_12251#2 AGG-CCTTCCTGGGGAGCGTCAGCGANTANTGCGCCCACCACGCGCAATGNTCCGTCATG 332 *** ********************** ** ***************** ** ********* consensus_12251#0 ATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAAT 681 consensus_12251#1 ATCGTCAAGCAACCCAAGGCCAAGCGCTCTCGTGCCGAGACCGCGTGAAAAACACCAAAT 595 consensus_12251#2 ATNGTCAAGCAACCCAAGGCCAAGCGCTTTNGTGCCGAGACCGCGTGAAAAACACCAAAT 392 ** ************************* * ***************************** consensus_12251#0 TTCGGGTGTGAGCTGAGCCGAGCAATGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCT 741 consensus_12251#1 TTCGGGTGTGAGCTGAGCCGAGCAATGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCT 655 consensus_12251#2 TTCGGGTGTGAGCTGAGCCGAGCAANGTGTGTGTGGTTCGCTTGGGTAGCAGCAGCTTCT 452 ************************* ********************************** consensus_12251#0 TGCGTTCTGTACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGT 801 consensus_12251#1 TGCGTTCTGTACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGT 715 consensus_12251#2 TGCGTTCTGNACATGGGATGATTTGTATGTGTTAGTTTCATAGGTTTTATCAGTTTATGT 512 ********* ************************************************** consensus_12251#0 ATCGAA------------------------------------------------------ 807 consensus_12251#1 ATCGAAATGTTTGTGCATCAGCCTATGCTTGCAGCCTTGTTATAAAAA------------ 763 consensus_12251#2 ATCGAAATGTTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 572 ****** consensus_12251#0 --- consensus_12251#1 --- consensus_12251#2 AAA 575 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||