These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1493 fasta sequence [CACCATCTTCTTCTTCTTCTTCTTCGTCTTCGTCACCGCCAGCCAACCACCTGACAAAGCAAGCAATCGAGCTGAGCACCCCAACCCAACCCTAGGCAGAGGCTGAGGCTGAGCGAGATCGCGGGCATGAGCTCCGCGCCGCAGCAGTTGCTCGATTCGTCGTCTCCGGGGCCGGGGCCGGGGCCGGAGGTGGAGGACGACGGGGGAAGGAGGGTGAGGAAGCCCTACACCATCACCAAGTCGCGGGAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTGTTTGATCGTGATTGGAAAAAGATTGAAGCATATG-TTGGCTCTAAGACTGTAATACAGATCAGAAGCCATGCACAGAAGTACTTTTTGAAGGTTCAAAAGAATGGAACAGGCGAGCATTTGCCCCCTCCTAGGCCAAAACGGAAGGCAGCACATCCATACCCACATAAAGCCTCAAAAAGAGCCCCTCAAGTTGTCCTACCACAACAAGCTTCTCATCTAATGGAGCAAGGCTGTCTTATACCTATGGACATATCTCCTGTTGCTAGAAACTTTAATGCAAATGATGTATTTTCTTCCTGGGATAGTGCTCTTGCCCAAAGTTTCAGTCCAAGGCATACACATGGTGCAGCAAATAATTGTTCTAGTAGCGTAGAGAGCCAATCTGGAACTTGTCCAACTTCTGAGGCAGTTGAGCAAGAGATCATGCTTCCAACGCTGCGTGCCATGCCAGACTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGATCCAGAGACAAGTGGGCATCTTCAGAGGTTGAGAGAGATGGATCCAATCGATGTTGAAACAGTGCTGTTACTGATGAAAAATTTGTCAATAAACCTGACAAACCCAAACTTTGAAGCACATAGGAAGGTACTCGCATCACATGGATATGGCATGGACCAAGTGAAGCATGAGAATTTAGGGGATCTGGGATCAACTCACACCCTTCATCTCCCATTCATGGTAACGACCAAATGAAAGAACACCACCACAATCAGCATCCATTGGGGGTAACAAGCAAACCCTGCTATCAGCACCCAGTGGCGATTTTGAGTGAATCCGAAATACCACATTGTGTTAGCGACATGTTGTACTGTCACGTTGTACATATAGCAGTTAGTAATGCTCTAACCATTAGGCTAGTTTTGCTCATCATCTAGATGGCCAGGTAGTTTATGTGCCTGTGATTTTTTTTTTTTGCCTTTCCTTTTATTTTAACTCATCTATGAACCTGCCACATAGTGGGGTATGTTGTATCACGGCATATGCATGCCTTTTGTTTTTAACCCCCTTTGAGAGTTTGGTACTTTGGTTGCATGTATTTTTGGCCGTGTATGCATATATGTATATGCGTGTGATTATGTATAGCTGTTTGCACAGGCTAACAAACAGTAGTTTGTATGGTAAATAATATGTGTCGTGTCCCCTCAAAAAAAAAAAAAAAAAAA] [+] EMBL AK111672 [CACCATCTTCTTCTTCTTCTTCTTCGTCTTCGTCACCGCCAGCCAACCACCTGACAAAGCAAGCAATCGAGCTGAGCACCCCAACCCAACCCTAGGCAGAGGCTGAGGCTGAGCGAGATCGCGGGCATGAGCTCCGCGCCGCAGCAGTTGCTCGATTCGTCGTCTCCGGGGCCGGGGCCGGGGCCGGAGGTGGAGGACGACGGGGGAAGGAGGGTGAGGAAGCCCTACACCATCACCAAGTCGCGGGAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTGTTTGATCGTGATTGGAAAAAGATTGAAGCATATG TTGGCTCTAAGACTGTAATACAGATCAGAAGCCATGCACAGAAGTACTTTTTGAAGGTTCAAAAGAATGGAACAGGCGAGCATTTGCCCCCTCCTAGGCCAAAACGGAAGGCAGCACATCCATACCCACATAAAGCCTCAAAAAGAGCCCCTCAAGTTGTCCTACCACAACAAGCTTCTCATCTAATGGAGCAAGGCTGTCTTATACCTATGGACATATCTCCTGTTGCTAGAAACTTTAATGCAAATGATGTATTTTCTTCCTGGGATAGTGCTCTTGCCCAAAGTTTCAGTCCAAGGCATACACATGGTGCAGCAAATAATTGTTCTAGTAGCGTAGAGAGCCAATCTGGAACTTGTCCAACTTCTGAGGCAATTGAGCAAGAGATCATGCTTCCAACGCTGCGTGCCATGCCAGACTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGATCCAGAGACAAGTGGGCATCTTCAGAGGTTGAGAGAGATGGATCCAATCGATGTTGAAACAGTGCTGTTACTGATGAAAAATTTGTCAATAAACCTGACAAACCCAAACTTTGAAGCACATAGGAAGGTACTCGCATCACATGGATATGGCATGGACCAAGTGAAGCATGAGAATTTAGGGGATCTGGGATCAACTCACACCCTTCATCTCCCATTCATGGTAACGACCAAATGAAAGAACACCACCACAATCAGCATCCATTGGGGGTAACAAGCAAACCCTGCTATCAGCACCCAGTGGCGATTTTGAGTGAATCCGAAATACCACATTGTGTTAGCGACATGTTGTACTGTCACGTTGTACATATAGCAGTTAGTAATGCTCTAACCATTAGGCTAGTTTTGCTCATCATCTAGATGGCCAGGTAGTTTATGTGCCTGTGATTTTTTTTTTTTGCCTTTCCTTTTATTTTAACTCATCTATGAACCTGCCACATAGTGGGGTATGTTGTATCACGGCATATGCATGCCTTTTGTTTTTAACCCCCTTTGAGAGTTTGGTACTTTGGTTGCATGTATTTTTGGCCGTGTATGCATATATGTATATGCGT ] [+] EMBL AK119640 [ ACCATTTTCTTCTTCTTCTTCTTCGTCTTCGTCACCGCCAGCCAACCACCTGACAAAGCAAGCAATCGAGCTGAGCACCCCAACCCAACCCTAGGCAGAGGCTGAGGCTGAGCGAGATCGCGGGCATGAGCTCCGCGCCGCAGCAGTTGCTCGATTCGTCGTCTCCGGGGCCGGGGCCGGGGCCGGAGGTGGAGGACGACGGGGGAAGGAGGGTGAGGAAGCCCTACACCATCACCAAGTCGCGGGAGAGTTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTGTTTGATCGTGATTGGAAAAAGATTGAAGCATATG TTGGCTCTAAGACTGTAATACAGATCAGAAGCCATGCACAGAAGTACTTTTTGAAGGTTCAAAAGAATGGAACAGGCGAGCATTTGCCCCCTCCTAGGCCAAAACGGAAGGCAGCACATCCATACCCACATAAAGCCTCAAAAAGAGCCCCTCAAGTTGTCCTACCACAACAAGCTTCTCATCTAATGGAGCAAGGCTGTCTTATACCTATGGACATATCTCCTGTTGCTAGAAACTTTAATGCAAATGATGTATTTTCTTCCTGGGATAGTGCTCTTGCCCAAAGTTTCAGTCCAAGGCATACACATGGTGCAGCAAATAATTGTTCTAGTAGCGTAGAGAGCCAATCTGGAACTTGTCCAACTTCTGAGGCAATTGAGCAAGAGATCATGCTTCCAACGCTGCGTGCCATGCCAGACTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGATCCAGAGACAAGTGGGCATCTTCAGAGGTTGAGAGAGATGGATCCAATCGATGTTGAAACAGTGCTGTTACTGATGAAAAATTTGTCAATAAACCTGACAAACCCAAACTTTGAAGCACATAGGAAGGTACTCGCATCACATGGATATGGCATGGACCAAGTGAAGCATGAGAATTTAGGGGATCTGGGATCAACTCACACCCTTCATCTCCCATTCATGGTAACGACCAAATGAAAGAACACCACCACAATCAGCATCCATTGGGGGTAACAAGCAAACCCTGCTATCAGCACCCAGTGGCGATTTTGAGTGAATCCGAAATACCACATTGTGTTAGCGACATGTTGTACTGTCACGTTGTACATATAGCAGTTAGTAATGCTCTAACCATTAGGCTAGTTTTGCTCATCATCTAGATGGCCAGGTAGTTTATGTGCCTGTGATTTTTTTTTTTTGCCTTTCCTTTTATTTTAACTCATCTATGAACCTGCCACATAGTGGGGTATGTTGTATCACGGCATATGCATGCCTTTTGTTTTTAACCCCCTTTGAGAGTTTGGTACTTTGGTTGCATGTATTTTTGGCCGTGTATGCATATATGTATATGCGTGTGATTATGTATAGCTGTTTGCACAGGCTAACAAACAGTAGTTTGTATGGTAAATAATATGTGTC ] [+] EMBL CB630035 [ TCTTCTTCTTCGTCTTCGTCACCGCCAGCCAACCACCTGACAAAGCAAGCAATCGAGCTGAGCACCCCAACCCAACCCTAGGCAGAGGCTGAGGCTGAGCGAGATCGCGGGCATGAGCTCCGCGCCGCAGCAGTTGCTCGATTCGTCGTCTCCGGGGCCGGGGCCGGGGCCGGAGGTGGAGGACGACGGGGGAAGGAGGGTGAGGAAGCCCTACACCATCACCAAGTCGCGGGAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTGTTTGATCGTGATTGGAAAAAGATTGAAGCATATG TTGGCTCTAAGACTGTAATACAGATCAGAAGCCATGCACAGAAGTACTTTTTGAAGGTTCAAAAGAATGGAACAGGCGAGCATTTGCCCCCTCCTAGGCCAAAACGGAAGGCAGCACATCCATACCCACATAAAGCCTCAAAAAGAGCCCCTCAAGTTGTCCTACCACAACAAGCTTCTCATCTAATGGAGCAAGGCTGTCTTATACCTATGGACATATCTCCTGTTGCTAGAAACTTTAATGCAAATGATGTATTTTCTTCCTGGGATAGTGCTCTTGCCCAAAGTTTCAGTCCAAGGCATACACATGGTGCAGCAAATAATTGTTCTAGTAGCATAGAGAGCCAATCTGGAACTTGTCCAACTTCTGAGGCAATTGAGCAAGAGATCATGCTTCCAACGCTGCGTGCCATGCCCGACTTTGCTCCAGTATACAACTTCCTGGGAAGC ] [+] EMBL CF315068 [ GACAAAGCAAGCAATCGAGCTGAGCACCCCAACCCAACCCTAGGCAGAGGCTGAGGCTGAGCGAGATCGCGGGCATGAGCTCCGCGCCGCAGCAGTTGCTCGATTCGTCGTCTCCGGGGCCGGGGCCGGGGCCGGAGGTGGAGGACGACGGGGGAAGGAGGGTGAGGAAGCCCTACACCATCACCAAGTCGCGGGAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTGTTTGATCGTGATTGGAAAAAGATTGAAGCATATG TTGGCTCTAAGACTGTAATACAGATCAGAAGCCATGCACAGAAGTACTTTTTGAAGGTTCAAAAGAATGGAACAGGCGAGCATTTGCCCCCTCCTAGGCCAAAACGGAAGGCAGCACATCCATACCCACATAAAGCCTCAAAAAGAGCCCCTCAAGTTGTCCTACCACAACAAGCTTCTCATCTAATGGAGCAAGGCTGTCTTATACCTATGGACATATCTCCTGTTGCTAGAAACTTTAATGCAAATGATGTA ] [+] EMBL CF303077 [ AGCAATCGAGCTGAGCACCCCAACCCAACCCTAGGCAGAGGCTGAGGCTGAGCGAGATCGCGGGCATGAGCTCCGCGCCGCAGCAGTTGCTCGATTCGTCGTCTCCGGGGCCGGGGCCGGGGCCGGAGGTGGAGGACGACGGGGGAAGGAGGGTGAGGAAGCCCTACACCATCACCAAGTCGCGGGAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTGTTTGATCGTGATTGGAAAAAGATTGAAGCATATG TTGGCTCTAAGACTGTAATACAGATCAGAAGCCATGCACAGAAGTACTTTTTGAAGGTTCAAAAGAATGGAACAGGCGAGCATTTGCCCCCTCCTAGGCCAAAACGGAAGGCAGCACATCCATACCCACATAAAGCCTCAAAAAGAGCCCCTCAAGTTGTCCTACCACAACAAGCTTCTCATCTAATGGAGCAAGGCTGTCTTATACCTATGGACATATCTCCTGTTGCTAGAAACTTTAATGCAAATG ] [+] EMBL CB661280 [ ATATGCCTTGCTCTAAGACTGTAATACAGATCAGAAGCCATGCACAGAAGTACTTTTTGAAGGTTCAAAAGAATGGAACAGGCGAGCATTTGCCCCCTCCTAGGCCAAAACGGAAGGCAGCACATCCATACCCACATAAAGCCTCAAAAAGAGCCCCTCAAGTTGTCCTACCACAACAAGCTTCTCATCTAATGGAGCAAGGCTGTCTTATACCTATGGACATATCTCCTGTTGCTAGAAACTTTAATGCAAATGATGTATTTTCTTCCTGGGATAGTGCTCTTGCCCAAAGTTTCAGTCCAAGGCATACACATGGTGCAGCAAATAATTGTTCTAGTAGCGTAGAGAGCCAATCTGGAACTTGTCCAACTTCTGAGGCAGTTGAGCAAGAGATCATGCTTCCAACGCTGCGTGCCATGCCAGACTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGATCCAGAGACAAGTGGGCATCTTCAGAGGTTGAGAGAGATGGATCCAATCGATGTTGAAACAGTGCTGTTACTGATGAAAAATTTGTCAATAAACCTGACAAACCCAAACTTTGAAGCACATAGGAAGGTACTCGCATCACATGGATATGGCATGGACCAAGTGAAGCATGAGAATTTAGGGGATCTGGGATCAACTCACACCCTTCATCTCCCATTCATGGTAACGACCAAATGAAAGAACACCACCACAATCAGCATCCATTGGGGGTAACAAGCAAACCCTGCTATCAGCACCCAGTGGCGA ] [+] EMBL CB661246 [ ATATG TTGGCTCTAAGACTGTAATACAGATCAGAAGCCATGCACAGAAGTACTTTTTGAAGGTTCAAAAGAATGGAACAGGCGAGCATTTGCCCCCTCCTAGGCCAAAACGGAAGGCAGCACATCCATACCCACATAAAGCCTCAAAAAGAGCCCCTCAAGTTGTCCTACCACAACAAGCTTCTCATCTAATGGAGCAAGGCTGTCTTATACCTATGGACATATCTCCTGTTGCTAGAAACTTTAATGCAAATGATGTATTTTCTTCCTGGGATAGTGCTCTTGCCCAAAGTTTCAGTCCAAGGCATACACATGGTGCAGCAAATAATTGTTCTAGTAGCGTAGAGAGCCAATCTGGAACTTGTCCAACTTCTGAGGCAGTTGAGCAAGAGATCATGCTTCCAACGCTGCGTGCCATGCCAGACTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGATCCAGAGACAAGTGGGCATCTTCAGAGGTTGAGAGAGATGGATCCAATCGATGTTGAAACAGTGCTGTTACTGATGAAAAATTTGTCAATAAACCTGACAAACCCAAACTTTGAAGCACATAGGAAGGTACTCGCATCACATGGATATGGCATGGACCAAGTGAAGCATGAGAATTTAGGGGATCTGGGATCAACTCACACCCTTCATCTCCCATTCATGGTAACGACCAAATGAAAGAACACCACCACAATCAGCATCCATTGGGGGTAACAAGCAAACCCTGCTATCAGCACCCAGTGGCGATTTTGAGTGAATCCGANATACCACATTGTGTTAGCGACAT ] [-] EMBL CB661279 [ GCAAGGCTGTCTTATACCTATGGACATATCTCCTGTTGCTAGAAACTTTAATGCAAATGATGTATTTTCTTCCTGGGATAGTGCTCTTGCCCAAAGTTTCAGTCCAAGGCATACACATGGTGCAGCAAATAATTGTTCTAGTAGCGTAGAGAGCCAATCTGGAACTTGTCCAACTTCTGAGGCAGTTGAGCAAGAGATCATGCTTCCAACGCTGCGTGCCATGCCAGACTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGATCCAGAGACAAGTGGGCATCTTCAGAGGTTGAGAGAGATGGATCCAATCGATGTTGAAACAGTGCTGTTACTGATGAAAAATTTGTCAATAAACCTGACAAACCCAAACTTTGAAGCACATAGGAAGGTACTCGCATCACATGGATATGGCATGGACCAAGTGAAGCATGAGAATTTAGGGGATCTGGGATCAACTCACACCCTTCATCTCCCATTCATGGTAACGACCAAATGAAAGAACACCACCACAATCAGCATCCATTGGGGGTAACAAGCAAACCCTGCTATCAGCACCCAGTGGCGATTTTGAGTGAATCCGAAATACCACATTGTGTTAGCGACATGTTGTACTGTCACGTTGTACATATAGCAGTTAGTAATGCTGTAACCATTAGGCTAGTTTTGCTCATCATCTAGATGGCCAGGTAGTTTATGTGCCTGTGATTTTTTTTTTTTGCCTTTCCTTTTATTTTAACTCATCTATGAACCTGCCACATAGTGGGGTATGTTGTATCACGGCATATGCAT ] [-] EMBL CB661245 [ ACATATCTCCTGTTGCTAGAAACTNTAATGCAAATGATGTATTTTCTTCCTGGGATAGTGCTCTTGCCCAAAGTTTCAGTCCAAGGCATACACATGGTGCAGCAAATAATTGTTCTAGTAGCGTAGAGAGCCAATCTGGAACTTGTCCAACTTCTGAGGCAGTTGAGCAAGAGATCATGCTTCCAACGCTGCGTGCCATGCCAGACTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGATCCAGAGACAAGTGGGCATCTTCAGAGGTTGAGAGAGATGGATCCAATCGATGTTGAAACAGTGCTGTTACTGATGAAAAATTTGTCAATAAACCTGACAAACCCAAACTTTGAAGCACATAGGAAGGTACTCGCATCACATGGATATGGCATGGACCAAGTGAAGCATGAGAATTTAGGGGATCTGGGATCAACTCACACCCTTCATCTCCCATTCATGGTAACGACCAAATGAAAGAACACCACCACAATCAGCATCCATTGGGGGTAACAAGCAAACCCTGCTATCAGCACCCAGTGGCGATTTTGAGTGAATCCGAAATACCACATTGTGTTAGCGACATGTTGTACTGTCACGTTGTACATATAGCAGTTAGTAATGCTCTAACCATTAGGCTAGTTTTGCTCATCATCTAGATGGCCAGGTAGTTTATGTGCCTGTGATTTTTTTTTTTTGCCTTTCCTTTTATTTTAACTCATCTATGAACCTGCCACATAGTGGGGTATGTTGTATCACGGGATATnc ] [-] EMBL CA760888 [ aaaaaATGGATCCAATCGGT TTTAACCAGTGCTGTTTCTGATAAAAAATTTGTCAATAACCTTGCCAAACCCAACCTTTTAAGCCCATAGGAAGGTCCTCGCATCCCATGGATTTGGCATGGGCCAAGTGAAGCATGAGAATTTAGGGGATCTGGGATCAACTCACACCCTTCATCTCCCATTCATGGTAACGACCAAATGAAAGAACCCCCCCCCAATTAGCATCCATTGGGGGTAACAAGCAAACCCTGCTATCAGCACCCAGTGGCGATTTTGAGTGAATCCGAAATACCCCATTGTGTTAGCGACATGTTGTACTGTCACGTTGTACATATAGCAGTTAGTAATGCTCTAACCATTAGGCTAGTTTTGCTCATTATCTAGATGGCCAGGTAGTTTATGTGCCTGTGA TTTTTTTTTTTGCCTTTCCTTTTATTTTAACTCATCTATGAACCTGCCACATAGTGGGGTATGTTGTATCCCGGCATATGCATGCCTTTTGTTTTTAACCCCCTTTGAGAGTTTGGTACTTTGGTTGCATGTATTTTTGGCCGTGTATGCATATATGTATATGCGTGTGATTATGTATAGCTGTTTGCACAGGCTAACAAACAGTAGTTTGTATGGTAAATAATATGTGTCGTGTCCCCTCAAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||