These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12256#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 764 fasta sequence [ATAGCCGCACTACCTATTATTGATAGTCATTGTAAATACAAGGGGAATTAATAACTTATAAACACAAAGTCACAAACAGTACAGAGCCGGCACAGCAGTTAATAGAATATGCGCTTGACAGATGAATCACAAACATAAAAATCGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGATCCTGTGTAAAGAGAAAAGACGGCCCCCTTCTTCTCACACATGTTAGCCATACACGAGTATTTGATAGTCTTCACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGTTTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGGCCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAAATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACGCATAGAGTACCTACAAGAACAAGAGTAAAGAGGCATTTGAGAAGAAGATGTCAGGAGTGGTACAGTTACAGGAGAATTCGTTAGTCGTGCCATATAAGAAGTGTTTAGGATATTTCAAGGAGAACAAAAGATCTAGTAATTCAACCACTCAGTCTTCGACTCCTTGGTTTCTTGTGATTCAGAATTCATCCTTAATTTGGTATACAAATACAATCATGCAGATTTCAACAATGAACTGCATCCTTGTATTC] [+] EMBL CB632143 [ATAGCCGCACTACCTATTATTGATAGTCATTGTAAATACAAGGGGAATTAATAACTTATAAACACAAAGTCACAAACAGTACAGAGCCGGCACAGCAGTTAATAGAATATGCGCTTGACAGATGAATCACAAACATAAAAATCGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGATCCTGTGTAAAGAGAAAAGACGGCCCCCTTCTTCTCACACATGTTAGCCATACACGAGTATTTGATAGTCTTCACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGTTTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGGCCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAAATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACGCATAGAGTACCTACAAGAACAAGAGTAAAGAGGCATTTGAGAAGAAGATGTCAGGAGTGGTACAGTTACAGGAGAATTCGTTAGTCGTGCCATATAAGAAGTGTTTAGGATATTTCAAGGAGAACAAAAGATCTAGTAATTCAACCACTCAGTCTTCGACTCCTTGGTTTCTTGTGATTCAGAATTCATCCTTAATTTGGTATACAAATACAATCATGCAGATTTCAACAATGAACTGCATCCTTGTATTC] consensusID : consensus_12256#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 704 fasta sequence [TTCGTGCAGAACGCCATCTACTCCAATCGCATCACCATCTTCTCTAAAACCTACTGCCCGTAAGCCCTCCAGGACGCCCCTTTACACGGCTCCTTTCACCTGTTTTTCTGGTTGGATTTTGGGGGAATTTTTCAGGGATGTGCGTGTGCTTGATGGTGAGGAGTGGCAGGAGTAGATGCCGCAGCGAGGAGATCTCCGGGAATAGAGAACGGGTTCATATACCGTGAATTAGGGTGGATTTGTTGTGCAGTAGATGGTGTAGTGCGAATTAGGAAGATTTGCCCTGCAATTGGAACCCAGATTGTTGAGAAATAGCTTAATTTAAGTTAAATTGAGCTTGTGAACTGTGGTCGGATAGTTTTATTTGACGGAATTTGAACATTTTGTTTGCTTAGAACTGAAAATAGTTACCAAACTGTCCATATACGAGTAGTTTTTATTCAAACTGTTGAATAGATCCAGCTATGCCTTGGTTTGCTAGATTTAACTCTATGATGTAGTATAGTCCCCACTACACCCCCTCTGGGCAGTACAAAGCCCTGGTGAATTTTGTGGAATGTATTTCAGGTAAGTTCTCTTTACATTTTTTTGGAAGATCTTTACATATTTCTGTCGAGTCTTTAAAACAAAATAAAATGGTTTGACCTACTGATACAATAGAGAAGTCTTAATACAGAGGGGGTATCCTACTCGAATTGCTGTCT] [+] EMBL CB677522 [TTCGTGCAGAACGCCATCTACTCCAATCGCATCACCATCTTCTCTAAAACCTACTGCCCGTAAGCCCTCCAGGACGCCCCTTTACACGGCTCCTTTCACCTGTTTTTCTGGTTGGATTTTGGGGGAATTTTTCAGGGATGTGCGTGTGCTTGATGGTGAGGAGTGGCAGGAGTAGATGCCGCAGCGAGGAGATCTCCGGGAATAGAGAACGGGTTCATATACCGTGAATTAGGGTGGATTTGTTGTGCAGTAGATGGTGTAGTGCGAATTAGGAAGATTTGCCCTGCAATTGGAACCCAGATTGTTGAGAAATAGCTTAATTTAAGTTAAATTGAGCTTGTGAACTGTGGTCGGATAGTTTTATTTGACGGAATTTGAACATTTTGTTTGCTTAGAACTGAAAATAGTTACCAAACTGTCCATATACGAGTAGTTTTTATTCAAACTGTTGAATAGATCCAGCTATGCCTTGGTTTGCTAGATTTAACTCTATGATGTAGTATAGTCCCCACTACACCCCCTCTGGGCAGTACAAAGCCCTGGTGAATTTTGTGGAATGTATTTCAGGTAAGTTCTCTTTACATTTTTTTGGAAGATCTTTACATATTTCTGTCGAGTCTTTAAAACAAAATAAAATGGTTTGACCTACTGATACAATAGAGAAGTCTTAATACAGAGGGGGTATCCTACTCGAATTGCTGTCT] [+] EMBL CB639392 [TTCGTGCAGAACGCCATCTACTCCAATCGCATCACCATCTTCTCTAAAACCTACTGCCCGTAAGCCCTCCAGGACGCCCCTTTACACGGCTCCTTTCACCTGTTTTTCTGGTTGGATTTTG ] [+] EMBL CB636949 [ GGCTCCTTTCACCTGTTTTTCTGGTTGGATTTTGGGGGAATTTTTCAGGGATGTGCGTGTGCTTGATGGTGAGGAGTGGCAGGAGTAGATGCCGCAGCGAGGAGATCTCCGGGAATAGAGAACGGGTTCATATACCGTGAATTAGGGTGGATTTGTTGTGCAGTAGATGGTGTAGTGCAAATTAGGAAGATTTGCCCTGCAATTGGAACCCAGATTGTTGAGAAATAGCTTAATTTAAGTTAAATTGAGCTTGTGAACTGTGGTCGGATAGTTTTATTTGACGGAATTTGAACATTTTGTTTGCTTAGAACTGAAAATAGTTACCAAACTGTCCATATACGAGTAGTTTTTATTCAAACTGTTGAATAGATCCAGCTATGCCTTGGTTTGCTAGATTTAACTCTATGATGTAGTATAGTCCCCACTACACCCCCTCTGGGCAGTACAAAGCCCTGGTGAATNNTGT ] consensusID : consensus_12256#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 645 fasta sequence [AGTCAACTAAATTCAAGTACTTACACAAACCATAGCCGCACTACCTATTATTGATAGTCATTGTAAATACAAGGGGAATTAATAACTTATAAACACAAAGTCACAAACAGTACAGAGCCGGCACAGCAGTTAATAGAATATGCGCTTGACAGATGAATCACAAACATAGAAATCGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGATCCTGTGTAAAGAGAAAAGACGGCCCCCTTCTTCTCACACATGTTAGCCATACACGAGTATTTGATAGTCTTAACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGTTTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGGCCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAGATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACGCATAGAGTACGGGCAGTAGGTTTTAGAGAAGATGGTGATGCGATTGGAGTAGATGGCGTTCTGCACGAAGGCCGAANG-NAGCGCGTCGCCGCCGCGGGGTC] [-] EMBL AK067828 [AGTCAACTAAATTCAAGTACTTACACAAACCATAGCCGCACTACCTATTATTGATAGTCATTGTAAATACAAGGGGAATTAATAACTTATAAACACAAAGTCACAAACAGTACAGAGCCGGCACAGCAGTTAATAGAATATGCGCTTGACAGATGAATCACAAACATAGAAATCGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGATCCTGTGTAAAGAGAAAAGACGGCCCCCTTCTTCTCACACATGTTAGCCATACACGAGTATTTGATAGTCTTAACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGTTTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGGCCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAGATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACGCATAGAGTACGGGCAGTAGGTTTTAGAGAAGATGGTGATGCGATTGGAGTAGATGGCGTTCTGCACGAA ] [+] EMBL CB636950 [ AACCATAGCCGCACTACCTATTATTGATAGTCATTGTAAATACAAGGGGAATTAATAACTTATAAACACAAAGTCACAAACAGTACAGAGCCGGCACAGCAGTTAATAGAATATGCGCTTGACAGATGAATCACAAACATAGAAATCGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGATCCTGTGTAAAGAGAAAAGACGGCCCCCTTCTTCTCACACATGTTAGCCATACACGAGTATTTGATAGTCTTAACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGTTTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGGCCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAGATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACGCATAG ] [-] EMBL AU101847 [ tTTTTAAATACAAGGGGAATTAATAACTTATAAACACAAAGTCACAAACAGTACAGAGCCGGCACAGCAGTTAATAGAATATGCGCTTGACAGATGAATCACAAACATAGAAATCGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGATCCTGTGTAAAGAGAAAAGACGGCCCCCTTCTTCTCACACATGTTAGCCATACACGAGTATTTGATAGTCTTAACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGTTTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGGCCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAGATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACGCATAGAGTACGGGCAGTAGGTTTTAGAGAAGATGGTGATGCGATTGGAGTAGATGGCGTTCTGCACGAAGGCCGAANG NAGCGCGTCGCCGCCGCGGGGTC] [-] EMBL CA305745 [ AGCAGTTAATAGAATATGCGCTTGACAGATGAATCACAAACATAGAAATCGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGATCCTGTGTAAAGAGAAAAGACGGCCCCCTTCTTCTCACACATGTTAGCCATACACGAGTATTTGATAGTCTTCACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGTTTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGGCCATTCACGAACACCTGTGACACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAGATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACG ] [-] EMBL AU181752 [ TGATAGTCTTAACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGTTTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGGCCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAGATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACGCATAGAGTACGGGCAGTAGGTTTTAGAGAAGATGGTGATGCGATTGGAGTAGATGGCGTTCTGCACGAA ] [-] EMBL OSC8631 [ gaCCACCAACGTGCTGGCCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGCCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAGATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACGCATAGAGTACGGGCAGTAGGTTTTAGAGAAGATGGTGATGCGATTGGAGTAGATGGCGTTCTGCACGAAGGCCGAAGGCGAGC CGTCGCCGCCGCGGGGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12256#0 -------------------------------ATAGCCGCACTACCTATTATTGATAGTCA 29 consensus_12256#2 AGTCAACTAAATTCAAGTACTTACACAAACCATAGCCGCACTACCTATTATTGATAGTCA 60 consensus_12256#1 -TTCGTGCAGAACGCCATCTACTCCAATCGCATCACCATCTTCTCTAAAACCTACTGCCC 59 ** ** * *** * * * * consensus_12256#0 TTGTAAATACAAGGGGAATTAATAACTTATAAACACAAAGTCACAAAC--AGTACAGAGC 87 consensus_12256#2 TTGTAAATACAAGGGGAATTAATAACTTATAAACACAAAGTCACAAAC--AGTACAGAGC 118 consensus_12256#1 GTAAGCCCTCCAGGACGCCCCTTTACACGGCTCCTTTCACCTGTTTTTCTGGTTGGATTT 119 * * *** * ** * * ** consensus_12256#0 CGGCACAGCAGTTAATAGA---ATATGCGCTTGACAG--ATGAATCACAAACATAAAAAT 142 consensus_12256#2 CGGCACAGCAGTTAATAGA---ATATGCGCTTGACAG--ATGAATCACAAACATAGAAAT 173 consensus_12256#1 TGGGGGAATTTTTCAGGGATGTGCGTGTGCTTGATGGTGAGGAGTGGCAGGAGTAGATGC 179 ** * ** * ** ** ****** * * ** * ** ** * consensus_12256#0 CGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGAT 202 consensus_12256#2 CGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGAT 233 consensus_12256#1 CGCAGCGAGGAGATCTCCGGGAATAGAGAACGGGTTCATATACCGTGAATTAGGGTGGAT 239 ** * * * * *** * * * * *** * * * * * * **** consensus_12256#0 CCTGTGTAAAG-AGAAAAGACGGCCCCCTTC--------TTCTCACACATGTTAGCCATA 253 consensus_12256#2 CCTGTGTAAAG-AGAAAAGACGGCCCCCTTC--------TTCTCACACATGTTAGCCATA 284 consensus_12256#1 TTGTTGTGCAGTAGATGGTGTAGTGCGAATTAGGAAGATTTGCCCTGCAATTGGAACCCA 299 *** ** *** * * * ** * ** * * * consensus_12256#0 CACGAGTATTTGATAGTCTTCACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGT 313 consensus_12256#2 CACGAGTATTTGATAGTCTTAACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGT 344 consensus_12256#1 GATTGTTGAGAAATAGCTTAATTTAAGTTAAATTGAGCTTGTGAACTGTGGTCGGATAGT 359 * * **** * ** ** * * * ** * * *** consensus_12256#0 TTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGG 373 consensus_12256#2 TTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGG 404 consensus_12256#1 TTTATTTGACGGAATTTGAACATTTTGTTTGCTTAGAACTGAAAATAGTTACCAAACTGT 419 ** * * ** * ****** * * * * *** consensus_12256#0 CCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGA 433 consensus_12256#2 CCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGA 464 consensus_12256#1 CCATATACGAGTAGTTTTTATTCAA----ACTGTTGAATAGATCCAGCT--ATGCCTTGG 473 **** **** * * * ** ** * * ** ** ** * * *** consensus_12256#0 ATTTCTCTACCATCCTCTCTGAAATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCT 493 consensus_12256#2 ATTTCTCTACCATCCTCTCTGAGATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCT 524 consensus_12256#1 --TTTGCTAGATTTAACTCTATGATGTAGTATAGTCCCCACTACACCCCCTCTGGGCAGT 531 ** *** * **** ** **** * * * * ** * * consensus_12256#0 CTAAATATACGCTTAGCAC-GCATAGAGTACCTACAAGAACAAGAGTAAAGAGGCATTTG 552 consensus_12256#2 CTAAATATACGCTTAGCAC-GCATAGAGTACGGGCAGTA-------------GGTTTTAG 570 consensus_12256#1 ACAAAGCCCTGGTGAATTTTGTGGAATGTATTTCAGGTAAGTTCTCTTTAC-ATTTTTTT 590 *** * * * * * *** * ** consensus_12256#0 AGAAGAAGATGTCAGGAGTGGTACAGTTACAGGAGAATTCGTTAGTCGTGCCATATAAGA 612 consensus_12256#2 AGAAGATGGTGATGCGATTGGAGTAGATG-----GCGTTCTGCACGAAGGCCGAANGNAG 625 consensus_12256#1 GGAAGATCTTTACATATTTCTGTCGAGT---------CTTTAAAACAAAATAAAATGGTT 641 ***** * * * * * * consensus_12256#0 AGTGTTTAGGATATTTCAAGGAGAACAAAAGATCTAGTAATTCAACCACTCAGTCTTCGA 672 consensus_12256#2 CGCGTC---GCCGCCGCGGGGTC------------------------------------- 645 consensus_12256#1 TGACCTACTGATACAATAGAGAAGTCTTAATACAGAGGGGGTATCCTACTCGAATTGCTG 701 * * * consensus_12256#0 CTCCTTGGTTTCTTGTGATTCAGAATTCATCCTTAATTTGGTATACAAATACAATCATGC 732 consensus_12256#2 ------------------------------------------------------------ consensus_12256#1 TCT--------------------------------------------------------- 704 consensus_12256#0 AGATTTCAACAATGAACTGCATCCTTGTATTC 764 consensus_12256#2 -------------------------------- consensus_12256#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||