These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12260#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1508 fasta sequence [TCTTTTTTTTTACGAATACCAAAATAATGACAATTACCTCCCAGCCTCTTGCAAATATTACAAATTATATGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGCCTACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGATTGTCTGTAAACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAAGACTCCAGCTTGGGCAAGGCATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACACGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATGGCTGAAAATAGGAAAAGTTAGTCCACACAGATTTTTTTCCCCTCTGAATAATATGCTCATGTGTTAGGAAAACTTGAGAAAGAGCATGAGCATCTTGACACAAAAAAAAATAGAGAAGATATAATAGCACCAGGTAGATACTAGTTCCTATCATGCGCAAAAATGTGAATAAATATTTTATCACGCTTTACTGTGGAGGGCAACTTACAATTAGGTACCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAATTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAGGCACAGAGAGCCAGGTAGAATCTGTTTGTTTGTTTCTGCACAAAAGGAAAAGTACAAAGATAAGATTTCAGATACTTTTTATTCCTTTAGCTAGTAAAAGGAGTATAGTTACACAATGAGAAATATCCAGGACCTTGGACCTGGATAAAGAAATAAAAGAGTTCTGTCCAAGTGCTATAATGATTATTTTTCATTGATCACGCATTATCTGTTCAAGTGTGAACTACAAGGGCATACATTTGGCATGTTTAAAGTGTAAATGCTATATGAAAGTATGATAACCTTAAACTGCAATACGCCACAAAAATTTTTTACAGCATACTCCAATCAAAGTTGATATTACACAAAATAAAAATATTATAAAGCTTCCACAGTCCAGAACAAGAGATGAAAAAACTGTTAACTTATTCCAAATGTTATTTGCTGATTTTTATTGGAATCAGATCCTGCTTAAAATTCATGTTTTCATATGTAGCTCAATAATGCAGCAAAAAGTTCAGAATCCTTTTTGTTTTGTGAGGAGAAACCCATAACTGAATCAATCAAAGGTTTCCAAGTTAGGAATTCTCTCACCCTGCCACCTTTGGGGAAAGGTTTAGAGCCATTCTTGCATGTGTGGGCATCACAGAATTGGCGCAAGAGAAATTCATGAAGACGGCTGGCAGATTGCCCTTGATTAATAGGAAAGCAACTATCTGCAAGGCTCTATTAGCAGAAGCAAAACTGAGTTAGATAATTTCCATCAGTAGGCCAGAAAATGCTCAATGTATATCACATCTATTGTTTAACCATAAGAACCAAGGTAGCAAAC] [+] EMBL CB682248 [TCTTTTTTTTTACGAATACCAAAATAATGACAATTACCTCCCAGCCTCTTGCAAATATTACAAATTATATGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGCCTACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGATTGTCTGTAAACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAAGACTCCAGCTTGGGCAAGGCATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACACGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATGGCTGAAAATAGGAAAAGTTAGTCCACACAGATTTTTTTCCCCTCTGAATAATATGCTCATGTGTTAGGAAAACTTGAGAAAGAGCATGAGCATCTTGACACAAAAAAAAATAGAGAAGATATAATAGCACCAGGTAGATACTAGTTCCTATCATGCGCAAAAATGTGAATAAATATTTTATCACGCTTTACTGTGGAGGGCAACTTACAATTAGGTACCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAATTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAGGCACAGAGAGCCAGGTAGAATCTGTTTGTTTGTTTCTGCACAAAAGGAAAAGTACAAAGATAAGATTTCAGATACT ] [-] EMBL CB682247 [ TGTTAAGGCACAGAGAGCCAGGTAGAATCTGTTTGTTTGTTTCTGCACAAAAGGAAAAGTACAAAGATAAGATTTCAGATACTTTTTATTCCTTTAGCTAGTAAAAGGAGTATAGTTACACAATGAGAAATATCCAGGACCTTGGACCTGGATAAAGAAATAAAAGAGTTCTGTCCAAGTGCTATAATGATTATTTTTCATTGATCACGCATTATCTGTTCAAGTGTGAACTACAAGGGCATACATTTGGCATGTTTAAAGTGTAAATGCTATATGAAAGTATGATAACCTTAAACTGCAATACGCCACAAAAATTTTTTACAGCATACTCCAATCAAAGTTGATATTACACAAAATAAAAATATTATAAAGCTTCCACAGTCCAGAACAAGAGATGAAAAAACTGTTAACTTATTCCAAATGTTATTTGCTGATTTTTATTGGAATCAGATCCTGCTTAAAATTCATGTTTTCATATGTAGCTCAATAATGCAGCAAAAAGTTCAGAATCCTTTTTGTTTTGTGAGGAGAAACCCATAACTGAATCAATCAAAGGTTTCCAAGTTAGGAATTCTCTCACCCTGCCACCTTTGGGGAAAGGTTTAGAGCCATTCTTGCATGTGTGGGCATCACAGAATTGGCGCAAGAGAAATTCATGAAGACGGCTGGCAGATTGCCCTTGATTAATAGGAAAGCAACTATCTGCAAGGCTCTATTAGCAGAAGCAAAACTGAGTTAGATAATTTCCATCAGTAGGCCAGAAAATGCTCAATGTATATCACATCTATTGTTTAACCATAAGAACCAAGGTAGCAAAC] consensusID : consensus_12260#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1418 fasta sequence [ACCTCCAAGCCTCTTGCAAATATTACAAATTATACGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGCCTACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGATTGTCTGTAAACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAAGACTCCAGCTTGGGCAAGGCATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACACGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATGGAATTAGGTACCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAATTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAGGCACAGAGAGCCAGGTAGAATCTGTTTGTTTGTTTCCTGCCACCTTTGGGGAAAGGTTTAGAGCCATTCTTGCATGTGTGGGCATCACAGAATTGGCGCAAGAGAAATTCATGAAGACGGCTGGCAGATTGCCCTTGATTAATAGGAAAGCAACTATCTGCAAGGCTCTCACAAAGATGACGATTCCTTGCAGCTGCAGTTGCACTGCATTTACTCTTTGGTTTCTTAAACTCCAACATCAGATCACAGTGAAGTGCTCCACATAGATCAGCCAAGCATCTTCCTTGACTATTATCCACAAGATTATTGTGCCGATTGTGAAAATGCTGATCAAGGAACTTCTCTGCTCGGAAGGCTTTCTTGCAGAAACCACAGCGCCATTCATTTATATCAAAGTGAATCTTATGCTGCTCCTGTTCCCGAAACATGTCATTACCAGGATGAAGTCTACATTTGCTTGGGAGTTCATATTTCTCTTTTTCCACAAAGGGCATCAAATACTCATCAATAGCTTTCCAAGCTGCACGGCTTCTTTCCCTTGAGCAATGCACTTGATTTGTGTGTTCATGTGACATAAGAAGAGTTCTGGATCCAGCAGCTTCATGAAATTCCTGGTGTGATGCCGCCGCAACAGCTAAAAGGCAGGAAGCGAAGAGGACGAGGTAGGCGGCGGAGCGAGAGCGACCACCCTCCCGCCTCGGCATCCTCCAAGCTTCTACAACCTTCTGGAGAATAATCGGAGGGGACCTCAGGTACTTGTTCTCATCCGAGCTATCTTGGATGGATCTCCCGCTCCACCCCACCCCAAGTCCAGTGCAGCAGAGGGGAGTAGGGGACTGTCTGGAGAGGAAGAGAGGGAGGGGAGCTGCGGGCTTCGATTCGAAGCGGCGGAGGCAGCCAGGTCAGGCGAGCGTGCTCCGGCGGGAGGATCGCCGGCGGCCGGCGGCGCGAGCGAGAGAGGCG] [-] EMBL AK069593 [ACCTCCAAGCCTCTTGCAAATATTACAAATTATATGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGCCTACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGATTGTCTGTAAACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAAGACTCCAGCTTGGGCAAGGCATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACACGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATGGAATTAGGTACCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAATTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAGGCACAGAGAGCCAGGTAGAATCTGTTTGTTTGTTTCCTGCCACCTTTGGGGAAAGGTTTAGAGCCATTCTTGCATGTGTGGGCATCACAGAATTGGCGCAAGAGAAATTCATGAAGACGGCTGGCAGATTGCCCTTGATTAATAGGAAAGCAACTATCTGCAAGGCTCTCACAAAGATGACGATTCCTTGCAGCTGCAGTTGCACTGCATTTACTCTTTGGTTTCTTAAACTCCAACATCAGATCACAGTGAAGTGCTCCACATAGATCAGCCAAGCATCTTCCTTGACTATTATCCACAAGATTATTGTGCCGATTGTGAAAATGCTGATCAAGGAACTTCTCTGCTCGGAAGGCTTTCTTGCAGAAACCACAGCGCCATTCATTTATATCAAAGTGAATCTTATGCTGCTCCTGTTCCCGAAACATGTCATTACCAGGATGAAGTCTACATTTGCTTGGGAGTTCATATTTCTCTTTTTCCACAAAGGGCATCAAATACTCATCAATAGCTTTCCAAGCTGCACGGCTTCTTTCCCTTGAGCAATGCACTTGATTTGTGTGTTCATGTGACATAAGAAGAGTTCTGGATCCAGCAGCTTCATGAAATTCCTGGTGTGATGCCGCCGCAACAGCTAAAAGGCAGGAAGCGAAGAGGACGAGGTAGGCGGCGGAGCGAGAGCGACCACCCTCCCGCCTCGGCATCCTCCAAGCTTCTACAACCTTCTGGAGAATAATCGGAGGGGACCTCAGGTACTTGTTCTCATCCGAGCTATCTTGGATGGATCTCCCGCTCCACCCCACCCCAAGTCCAGTGCAGCAGAGGGGAGTAGGGGACTGTCTGGAGAGGAAGAGAGGGAGGGGAGCTGCGGGCTTCGATTCGAAGCGGCGGAGGCAGCCAGGTCAGGCGAGCGTGCTCCGGCGGGAGGATCGCCGGCGGCCGGCGGCGCGAGCGAGAGAGGCG] [+] EMBL CB650776 [ CCTCCAAGCCTCTTGCAAATATTACAAATTATACGTGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGCCTACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGATTGTCTGTAAACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAAGACTCCAGCTTGGGCAAGGCATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACACGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATGGAATTAGGTACCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAATTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAGGCACAGAGAGCCAGGTAGAATCTGTTTGTTTGTTTCCTGCCACCTTTGGGGAAAGGTTTAGAGCCATTCTTGCATGTGTGGGCATCACAGAATTGGCGCAAGAGAAATTCATGAAGACGGCTGGCAGATTGCCCTTGATTAATAGGAAAGCAACTATCTGCAAGGCTCTCACAAAGATGACGATTCCTTGCAGCTGCAGTTGCACTGCATTTACTCTTTGGTTTCTTAAACTCCAACATCAGATCACAGTGAAGTGCTCCACATAGATCAGCCAAGCATCTTCCTTGACTATTATCCACAAGATTATTGTGCCGATTGTGAAAATGCTGATCAAGGAACT ] [+] EMBL CB650812 [ CCTCCAAGCCTCTTGCAAATATTACAAATTATACGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGCCTACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGATTGTCTGTAAACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAAGACTCCAGCTTGGGCAAGGCATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACACGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAAAAGCAGGGCATGGAATTAGGTACCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAATTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAGGCACAGAGAGCCAGGTAGAATCTGTTTGTTTGTTTCCTGCCACCTTTGGGGAAAGGTTTAGAGCCATTCTTGCATGTGTGGGCATCACAGAATTGGCGCAAGAGAAATTCATGAAGACGGCTGGCAGATTGCCCTTGATTAATAGGAAAGCAACTATCTGCAAGGCTCTCACAAAGATGACGATTCCTTGCAGCTGCAGTTGCACTGCATTTACTCTTTGGTTTCTTAAACTCCAACATCAGATCACAGTGAAGTGCTCCACATAGATCAGCCAAGCATCTTCCTTGACTATTATCCACAAGATTATTGTGCCGATTGTGAAAATGCTGATCAAGGAAC ] consensusID : consensus_12260#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 857 fasta sequence [CGCCTCTCTCGCTCGCGCCGCCGCGCCGCCGGCGATCCTCCCGCCGGAGCACGCTCGCCTGACCTGGCTGCCTCCGCCGCTTCGAATCGAAGCCCGCAGCTCCCCCTCCCTCTCTTCCTCTCCAGACAGTCCCCTACTCCCCTCTGCTGCACTGGACTTGGGGTGGGGTGGAGCGGGAGATCCATCCAAGATAGCTCGGAGTGAGTGATTTCCCCTTTTTTCTGAAGGTTGTAGAAGCTTGGAGGATGCCGAGGCGGGA-GGGTGGTCGCTCTCGCTCCGCCGCCTACCTCGTCCTCTTCGCTTCCTGCCTTTTAGCTGTTGCGGCGGCATCACACCAGGAATTTCATGAAGCTGCTGGATCCAGAACTCTTCTTATGTCACATGAACACACAAATCAAGTGCATTGCTCAAGGGAAAGAAGCCGTGCAGCTTGGAAAGCTATTGATGAGTATTTGATGCCCTTTGTGGAAAAAGAGAAATATGAACTCCCAAGCAAATGTAGACTTCATCCTGGTAATGACATGTTTCGGGAACAGGAGCAGCATAAGATTCACTTTGATATAAATGAATGGCGCTGTGGTTTCTGCAAGAAAGCCTTCCGAGCAGAGAAGGTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATACTCAAGGAAGATGCTTGGCTGATCTATGTGGAGCACTTCACTGTGATCTGATGTTGGAGTTTAACACACCAAAGAGTAAATGCAGTGCAACTGCAGCTGCAAGGAATCGTCATCTTTGTGAGAGCCTAGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGACTTCATGAATTTCTCTTGCGCCAA] [+] EMBL CF280475 [CGCCTCTCTCGCTCGCGCCGCCGCGCCGCCGGCGATCCTCCCGCCGGAGCACGCTCGCCTGACCTGGCTGCCTCCGCCGCTTCGAATCGAAGCCCGCAGCTCCCCCTCCCTCTCTTCCTCTCCAGACAGTCCCCTACTCCCCTCTGCTGCACTTTACTTGGGGTGGGGTGGAGCGGGAGATCCATCCAAGATAGCTTTTATTGAGTGATTTCCCCTTTTTTCTGAAGGTTGTAGAAGCTTGGAGGATGCCGAGGCGGGAGGGGTGGTCGCTCTCGCTCCGCCGCCTACCTCGTCCTCTTCGCTTCCTGCCTTTTAGCTGTTGCGGCGGCATCACACCAGGAATTTCATGAAGCTGCTGGATCCAGAACTCTTCTTATGTCACATGAACACACAAATCAAGTGCATTGCTCAAGGGAAAGAAGCCGTGCAGCTTGGAAAGCTATTGATGAGTATTTGATGCCCTTTGTGGAAAAAGAGAAATATGAACTCCCAAGCAAATGTAGACTTCATCCTGGTAATGACATGTTTCGGGAACAGGAGCAGCATAAGATTCACTTTGATATAAATGAATGGCGCTGT ] [+] EMBL CB650811 [ GACCTGGCTGCCTCCGCCGCTTCGAATCGAAGCCCGCAGCTCCCCCTCCCTCTCTTCCTCTCCAAACAGTCCCCTACTCCCCTCTGCTGCACTGGACTTGGGGTGGGGTGGAGCGGGAGATCCATCCAAGATAGCTCGGAGTGAGTGATTTCCCCTTTTTTCTGAAGGTTGTAGAAGCTTGGAGGATGCCGAGGCGGGA GGGTGGTCTCTCTCACTCCGCCGCCTACCTCGTCCTCTTCGCTTCCTGCCTTTTATCTGTTGCGGCGGCATCACACCAGGAATTTCATGAAGCTGCTGGATCCAGAACTCTTCTTATGTCACATGAACACACAAATCAAGTGCATTGCTCAAGGGAAAGAAGCCGTGCAGCTTGGAAAGCTATTGATGAGTATTTGATGCCCTTTGTGGAAAAAGAGAAATATGAACTCCCAAGCAAATGTAGACTTCATCCTGGTAATGACATGTTTCGGGAACAGGAGCAGCATAAGATTCACTTTGATATAAATGAATGGCGCTGTGGTTTCTGCAAGAAAGCCTTCCGAGCAGAGAAGGTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATACTCAAGGAAGATGCTTGGCTGATCTATGTGGAGCACTTCACTGTGATCTGATGTTGGAGTTTAACACACCAAAGAGTAAATGCAGTGCAACTGCAGCTGCAAGGAATCGTCATCTTTGTGAGAGCCTAGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGACTTCATGAATTTCTCTTGCGCCAA] [+] EMBL CB650775 [ GACCTGGCCGTCTCCGCCGCTTCGAATCGAAGCCCGCAGCTCCCCCTCCCTCTCTTCCTCTCCAGACAGTCCCCTACTCCCCTCTGCTGCACTGGACTTGGGGTGGGGTGGAGCGGGAGATCCATCCAAGATAGCTCGGAGTGAGTGATTTCCCCTTTTTTCTGAAGGTTGTAGAAGCTTGGAGGATGCCGAGGCGGGA GGGTGGTCGCTCTCGCTCCGCCGCCTACCTCGTCCTCTTCGCTTCCTGCCTTTTAGCTGTTGCGGCGGCATCACACCAGGAATTTCATGAAGCTGCTGGATCCAGAACTCTTCTTATGTCACATGAACACACAAATCAAGTGCATTGCTCAAGGGAAAGAAGCCGTGCAGCTTGGAAAGCTATTGATGAGTATTTGATGCCCTTTGTGGAAAAAGAGAAATATGAACTCCCAAGCAAATGTAGACTTCATCCTGGTAATGACATGTTTCGGGAACAGGAGCAGCATAAGATTCACTTTGATATAAATGAATGGCGCTGTGGTTTCTGCAAGAAAGCCTTCCGAGCAGAGAAGTTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATAGTCAAGGAAGATGCTTGGCTGATCTATGTGGAGCACTTCACTGTGATCTGATGTTGGAGTTTAAGAAACCAAAGAGTAAATGCAGTGCAACTGCAGCTGCAAGGAATCGTCATCTTTGTGAGAGCCTTGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTCTTCA ] consensusID : consensus_12260#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [TTTTTTTGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGCCTACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGATTGTCTGTAAACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAAGACTCCAGCTTGGGCAAGACATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACACGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATGGCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAATTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAGGCACAGAGAG] [+] EMBL CF280474 [TTTTTTTGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGCCTACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGATTGTCTGTAAACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAAGACTCCAGCTTGGGCAAGACATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACACGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATGGCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAATTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAGGCACAGAGAG] consensusID : consensus_12260#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence [CAGAACTCTTCTTATGTCACATGAACACACAAATAAGTGCATAGCTCAAGGGAAAAGAGGCGGTCAGCTTGGAAAACTATTAGGTATTTGATCCCCTTTGTGGAAAAAGAGAAATATGAACTCCCAAGCAAATGTAGACTTATCCTGGTAATGACATGGTTTGGGAAACCGGAGCAGCATAACATTCACTTTGATATAAATGAATGGCGCTGTGGGTTTCTGTCAAG] [+] EMBL D42188 [CAGAACTCTTCTTATGTCACATGAACACACAAATAAGTGCATAGCTCAAGGGAAAAGAGGCGGTCAGCTTGGAAAACTATTAGGTATTTGATCCCCTTTGTGGAAAAAGAGAAATATGAACTCCCAAGCAAATGTAGACTTATCCTGGTAATGACATGGTTTGGGAAACCGGAGCAGCATAACATTCACTTTGATATAAATGAATGGCGCTGTGGGTTTCTGTCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12260#1 -----------------------------------ACCTCCAAGCCTCTTGCAAATATTA 25 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 TCTTTTTTTTTACGAATACCAAAATAATGACAATTACCTCCCAGCCTCTTGCAAATATTA 60 consensus_12260#2 ----------------------------------------CGCCTCTCTCGCTCGCGCCG 20 consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 CAAATTATACGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGC 85 consensus_12260#3 ---TTTTTTTGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGC 57 consensus_12260#0 CAAATTATATGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGC 120 consensus_12260#2 CCGCGCCGCCGGCGATCCTCCCGCCGGAGCACGCTCGCCTGACCTGGCTGCCTCCGCCGC 80 consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 CT---ACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGAT 142 consensus_12260#3 CT---ACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGAT 114 consensus_12260#0 CT---ACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGAT 177 consensus_12260#2 TTCGAATCGAAGCCCGCAGCTCCCCCTCCCTCTCTTCCTCTCCAGACAGTCCCCTACTCC 140 consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 TGTCTGTA--AACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAA 200 consensus_12260#3 TGTCTGTA--AACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAA 172 consensus_12260#0 TGTCTGTA--AACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAA 235 consensus_12260#2 CCTCTGCTGCACTGGACTTGGGGTGGGGTGGAGCGGGAGATCCATCCAAGATAGCTCGGA 200 consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 GACTCCAGCTTGGGCAAGGCATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACA 260 consensus_12260#3 GACTCCAGCTTGGGCAAGACATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACA 232 consensus_12260#0 GACTCCAGCTTGGGCAAGGCATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACA 295 consensus_12260#2 GTGAGTGATTTCCCCTTTTTTCTGAAGGTTGTAGAAGCTTGGAGGATGCCGAGGCGGGAG 260 consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 CGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATG 320 consensus_12260#3 CGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATG 292 consensus_12260#0 CGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATG 355 consensus_12260#2 GGTGGTCGCTCTCGCTCCGCCGCCTACCTCGTCCTCTTCGCTTCCTGCCTTTTAGCTGTT 320 consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 GA--------------ATTAGGTACCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAA 366 consensus_12260#3 G------------------------CTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAA 328 consensus_12260#0 GCTGAAAATAGGAAAAGTTAGTCCACACAGATTTTTTTCCCCTCTGAATAATATGCTCAT 415 consensus_12260#2 GCGGCG---GCATCACACCAGGAATTTCATGAAGCTGCTGGATCCAGA-ACTCTTCTTAT 376 consensus_12260#4 --------------------------------------------CAGA-ACTCTTCTTAT 15 * * * * * consensus_12260#1 TTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGAT 426 consensus_12260#3 TTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGAT 388 consensus_12260#0 GTGTTAGGAAAACTTGAGAAAGAGCATGAGCATCTTGACACAAAAAAAAATAGAGAAGAT 475 consensus_12260#2 GTCACATGAACACACAA-----ATCAAGTGCATTGCTCAAGGGAAAGAAGCCGTGCAGCT 431 consensus_12260#4 GTCACATGAACACACAA-----AT-AAGTGCATAGCTCAAGGGAAAAGAGGCGGTCAGCT 69 * ** * * ** * ** * consensus_12260#1 AGAACAGTGGCAA--AAGTACTA-TTGTTA--AGGCACAGAGAGCCAGGTAGAATCTGTT 481 consensus_12260#3 AGAACAGTGGCAA--AAGTACTA-TTGTTA--AGGCACAGAGAG---------------- 427 consensus_12260#0 ATAATAGCACCAGGTAGATACTAGTTCCTATCATGCGCAAAAATGTGAATAAATATTTTA 535 consensus_12260#2 TGGAAAGCTATTGATGAGTATTTGATGCCCT-TTGTGGAAAAAGAGAAATATGAACTCCC 490 consensus_12260#4 TGGAAAACTATTA---GGTATTTGATCCCCT-TTGTGGAAAAAGAGAAATATGAACTCCC 125 * * ** * * * * * * consensus_12260#1 TGTTTGTTTCCTG-------CCACCTTTGGGGAAAGGTTTAGAGCCATTCTTGCATGTGT 534 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 TCACGCTTTACTGTGGAGGGCAACTTACAATTAGGTACCTAAGATGGTTTTTTCTTTTGG 595 consensus_12260#2 AAGCAAATGTAGACTTCATCCTGGTAATGACATGTTTCGGGAA-CAGGAGCAGCATA-AG 548 consensus_12260#4 AAGCAAATGTAGACTT-ATCCTGGTAATGACATGGTTTGGGAAACCGGAGCAGCATA-AC 183 consensus_12260#1 GGGCATCACAGAATTGGCGCAAGAGAAATTCATGAAGACGGCTGGCAGATTGCCCTTGAT 594 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 ACAACTTTCGAAATTCGTCTTAAA-----TTTTGACCGCCTTTCTTCATTTCCCTCTGGT 650 consensus_12260#2 ATTCACTTTGATATAAATGAATGG-----CGCTGTGG-TTTCTGCAAGAAAGCCTTCCGA 602 consensus_12260#4 ATTCACTTTGATATAAATGAATGG-----CGCTGTGGGTTTCTGTCAAG----------- 227 consensus_12260#1 TAATAGGAAAGCAACTATCTGCAAGGCTCTCACAAAGATGACGATTCCTTGCAGCTGCAG 654 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 --GCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAG-GCACAGAGAG 707 consensus_12260#2 GCAGAGAAGGTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATACT 662 consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 TTGCACTGCATTTACTCTTTGGTTTCTTAAACTCCAACATCAGATCACAGTGAAGTGCTC 714 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 CCAGGTAGAATCTGTTTGTTTGTTTCT---GCACAAAAGGAAAAGTACAAAGATAAGATT 764 consensus_12260#2 CAAGGAAGATGCTTGGCTGATCTATGTGGAGCACTTCACTGTGATCTGATGTTGGAGTTT 722 consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 CACATAGATCAGCCAAGCATCTTCCTTGACTATTATCCACAAGATTATTGTGCCGATTGT 774 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 T-CAGATACTTTTTA-----TTCCTTTAGCTAGTAAAAGGAGTATAGTTACACAATGAGA 818 consensus_12260#2 A--ACACACCAAAGAGTAAATGCAGTGCAACTGCAGCTGCAAGGAATCGTCATCTTTGTG 780 consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 GAAAATGCTGATCAAGGAACT---TCTCTGCTCGGAAGGCTTTCTTGCAGAAACCACAGC 831 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 AATATCCAGGACCTTGGACCTGGATAAAGAAATAAAAGAGTTCTGTCCAAGTGCTATAAT 878 consensus_12260#2 AGAGCCTAGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGACTTCATG 840 consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 GCCATTCATTTAT--ATCAAAGTGAATCTTATGCTGCTCCTGTTCCCGAAACATGTCATT 889 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 GATTATTTTTCATTGATCACGCATTATCTGTTCAAGTGTGAACTACAAGGGCATACATTT 938 consensus_12260#2 AATTTCTCTTGCGCCAA------------------------------------------- 857 consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 ACCAGGATGAAGTCTACATTTGCTTGGGAGTTCATATTTCTCTTTTTCCACAAAGGGCAT 949 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 GGCATGTTTAAAGTGTAAATGCTATATGAAAGTATGATAACCTTAAACTGCAATACGCCA 998 consensus_12260#2 ------------------------------------------------------------ consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 CAAATACTCATCAATAGCTTTCCAAGCTGCACGGCTTCTTTCCCTTGAGCAATGCACTTG 1009 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 CAAAAATTTTTTACAGCATACTCCAATCAAAGTTGATATTACACAAAATAAAAATATTA- 1057 consensus_12260#2 ------------------------------------------------------------ consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 ATTTGTGTGTTCATGTGACATAAGAAGAGTTCTGGATCCAGCAGCTTCATGAAATTCCTG 1069 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 --TAAAGCTTCCACAGTCCAGAACAAGAGATGAAAAAACTGTTAACTTATTCCAAATGTT 1115 consensus_12260#2 ------------------------------------------------------------ consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 GTGTGATG-CCGCCGCAACAGCTAAAAGGCAGGAAGCGAAGAGGACGAGGTAGGCGGCGG 1128 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 ATTTGCTGATTTTTATTGGAATCAGATCCTGCTTAAAATTCATGTTTTCATATGTAGCTC 1175 consensus_12260#2 ------------------------------------------------------------ consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 AGCGAGAGCGACCACCCTCCCGCCTCGGCATCCTCCAAGCTTCTACAACCTTCTGGAGAA 1188 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 AATAATGCAGCAAAAAGTTCAGAATCCTTTTTGTTTTGTGAGGAGAAACCCATAACTGAA 1235 consensus_12260#2 ------------------------------------------------------------ consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 TAATCGGAGGGGACCTCAGGTACTTGTTCTC--ATCCGAGCTATCTTGGATGGATCTCCC 1246 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 TCAATCAAAGGTTTCCAAGTTAGGAATTCTCTCACCCTGCCACCTTTGGGGAAAGGTTTA 1295 consensus_12260#2 ------------------------------------------------------------ consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 GCTCCACCCCACCCCAAGTCCAGTGCAGCAGAGGGGAGTAGGGGACTGTCTGGAGAGGAA 1306 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 GAGCCATTCTTGCATGTGTGGGCATCACAGAATTGGCGCAAGAGAAATTCATGAAGACGG 1355 consensus_12260#2 ------------------------------------------------------------ consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 GAGAGGGAGGGGAGCTGCGGGCTTCGATTCGAAGCGGCGGAGGCAGCCAGGTCAGGCGAG 1366 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 CTGGCAGATTGCCCTTGATTAATAGGAAAGCAACTATCTGCAAGGCTCTATTAGCAGAAG 1415 consensus_12260#2 ------------------------------------------------------------ consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 CGTGCTCCGGCGGGAGGATCGCCGGCGGCCGGCGGCGCGAGCGAGAGAGGCG-------- 1418 consensus_12260#3 ------------------------------------------------------------ consensus_12260#0 CAAAACTGAGTTAGATAATTTCCATCAGTAGGCCA-GAAAATGCTCAATGTATATCACAT 1474 consensus_12260#2 ------------------------------------------------------------ consensus_12260#4 ------------------------------------------------------------ consensus_12260#1 ---------------------------------- consensus_12260#3 ---------------------------------- consensus_12260#0 CTATTGTTTAACCATAAGAACCAAGGTAGCAAAC 1508 consensus_12260#2 ---------------------------------- consensus_12260#4 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||