These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1463 fasta sequence [CGCTGCGAAGCCATCTTCTTCTCGGTCTCCACGCGCTTTCACCTCCGTATTTTACTCGCGCCCTTCTCTCTCTCCTCGACCTCATTCGCCTCGCCTCGCGTCTCGTCTCGTTCGCCCCTCGCCACCACGCAACACGCCATGGGCGCGGCCGACGACGCCAACCACCGCCACGAGGAGGCCAGCCCCCTCCTGCCACCGGGCGGCGGCGGCGGCGGCGGCAAGAAGCTCCACCAGTCTCCGCCTCCATCGCCTCCGGAGGCAGCCAAGTGC-TGCGCCGATGGAGTCCCCGTCGTTATGGGCGAGCCGCTCGGGGCACCCGCACCGCCGCGGGAGAGC-TGGAACTCGGGGGTGCTCTCCTGCCTCGGCCGCAACGACGAGTTCTGCAGCAGCGACGTCGAAGTGTGTCTTCTTGGAAGCATAGCACCATGTGTGCTGTATGGTAGTAATGTTGAGAGGTTTGCAGCCAGACCAGGAACTTTTGCAAACAGCT-GCTTGCCTTACACTGGCCTCTATAT-GCTTGGGAATGCTCTCTTCGGGTGGAACTGCATAGCCCCA-TGGTTCTCTCATCACACTCGTACAGCTATTCG-TCGACGATACA-ATCTTGAGGGTAGC-TTTGAGGCTTTCACTAAGCA-ATGTGGGTGCTGCCATGGCCTTGTTGAGGATGAGGGGAACCGTGAGCACCTGGAGGTTGCCTGCGACCTTGCAACTCACTACTTCTGTCACCC-TTGTGCGCTCTGCCAGGAGGGACGCGAGCTGCGGCGCAGGGTCCCCCATCCTGGCTTCAACGGGCGATCTGTCTTGGTCATGACGCCACCAAAGGAGCAGACTATGGGTCGTGGCATGTGAACCGTGCCAAACATCTGCTCTGCTCTATTTGCACTTGAGCTATTATGTGATGAATGTTCTCTACTGCCTTGGTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGATATGGGATCATGATGGACAATGGAAACTCCAGCCTGTTTCTCTGAATTGTGTTGATCGTCTTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTAATACTGTATCACGTTTGTGTTGGCAATCCACTTTTAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTGGGCTTACCTAACCTTATCTTAAACAAAAAGGGAAAATTCCGGGCCCTAAAATAAAATCCCCCTTATAGGAAGTCTTTTAAAAATCAATGGCCCGTGTTTTAAAAACTTGGAAATGGAAAAAACCTTGGCTTACCCAAATTAAATCCCTTTGAAAAAAATCCCCTTTTCCCAATTTGGCAAAAAACAAAAAAGGCCCCAACAAATCCCCTTTCCAAAAATTTGCCCACCTTATACTACCGGAATTTAAAGGTTAACCCCTAA] [+] EMBL AK072658 [CGCTGCGAAGCCATCTTCTTCTCGGTCTCCACGCGCTTTCACCTCCGTATTTTACTCGCGCCCTTCTCTCTCTCCTCGACCTCATTCGCCTCGCCTCGCGTCTCGTCTCGTTCGCCCCTCGCCACCACGCAACACGCCATGGGCGCGGCCGACGACGCCAACCACCGCCACGAGGAGGCCAGCCCCCTCCTGCCACCGGGCGGCGGCGGCGGCGGCGGCAAGAAGCTCCACCAGTCTCCGCCTCCATCGCCTCCGGAGGCAGCCAAGTGC TGCGCCGATGGAGTCCCCGTCGTTATGGGCGAGCCGCTCGGGGCACCCGCACCGCCGCGGGAGAGC TGGAACTCGGGGGTGCTCTCCTGCCTCGGCCGCAACGACGAGTTCTGCAGCAGCGACGTCGAAGTGTGTCTTCTTGGAAGCATAGCACCATGTGTGCTGTATGGTAGTAATGTTGAGAGGTTTGCAGCCAGACCAGGAACTTTTGCAAACAGCT GCTTGCCTTACACTGGCCTCTATAT GCTTGGGAATGCTCTCTTCGGGTGGAACTGCATAGCCCCA TGGTTCTCTCATCACACTCGTACAGCTATTCG TCGACGATACA ATCTTGAGGGTAGC TTTGAGGCTTTCACTAAGCA ATGTGGGTGCTGCCATGGCCTTGTTGAGGATGAGGGGAACCGTGAGCACCTGGAGGTTGCCTGCGACCTTGCAACTCACTACTTCTGTCACCC TTGTGCGCTCTGCCAGGAGGGACGCGAGCTGCGGCGCAGGGTCCCCCATCCTGGCTTCAACGGGCGATCTGTCTTGGTCATGACGCCACCAAAGGAGCAGACTATGGGTCGTGGCATGTGAACCGTGCCAAACATCTGCTCTGCTCTATTTGCACTTGAGCTATTATGTGATGAATGTTCTCTACTGCCTTGGTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGATATGGGATCATGATGGACAATGGAAACTCCAGCCTGTTTCTCTGAATTGTGTTGATCGTCTTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTAATACTGTATCACGTTTGTGTTGGCAATCCACTTTT ] [+] EMBL AU075439 [ TTCTCTCTCTCCTCGACCTCATTCGCCTCGCCTCGCGTCTCGTCTCGTTCGCCCCTCGCCACCACGCAACACGCCATGGG GCGGCCGACGACGCCAACCACCGCCACGAGGAGGCCAGCCCCCTCCTGCCACCGGGCGGCGGCGGCGGCGGCGGCAAGAAGCTCCACCAGTCTCCGCCTCCATCGCCTCCGGAGGCAGCCAAGTGC TGCGCCGATGGAGTCCCCGTCGTTATGGGCGAGCCGCTCGGGGCACCCGCACCGCCGCGGGAGAGC TGGAACTCGGGGGTGCTCTCCTGCCTCGGCCGCAACGACGAGTTCTGCAGCAGCGACGTCGAAGTGTGTCTTCTTGGAAGCATAGCACCATGTGTGCTGTATGGTAGTAATGTTGAGAGGTTTGCAGCCAGACCAGGAACTTTTGCAAACAGCTGGCTTGCCTTACACTGGCNTCTATATGGCTTGGGA ] [+] EMBL AU095168 [ TTCTCTCTCTCCTCGACCTCATTCGCCTCGCCTCGCGTCTCGTCTCGTTCGCCCCTCGCCACCACGCAACACGCCATGGGCGCGGCCGACGACGCCAACCACCGCCACGAGGAGGCCAGCCCCCTCCTGCCACCGGGCGGCGGCGGCGGCGGCGGCAAGAAGCTCCACCAGTCTCCGCCTCCATCGCCTCCGGAGGCAGCCAAGTNCTTGCGCCGATGGAGTCCCCGTCGTTATNGGCGAGCCGCTCGGGGCA CCGCACNGCCGCGGGAGAGCTTGGAATTCGGGGGTGCTCTTCTTGCTCGGCCGCAA ] [+] EMBL AU181900 [ CTCTCTCTCCTCGACCTCATTCGCCTCGCCTCGCGTCTCGTCTCGTTCGCCCCTCGCCACCACGCAACACGCCATGGGCGCGGCCGACGACGCCAACCACCGCCACGAGGAGGCCAGCCCCCTCCTGCCACCGGGCGGCGGCGGCGGCGGCGGCAAGAAGCTCCACCAGTCTCCGCCTCCATCGCCTCCGGAGGCAGCCAAGTGC TGCGCCGATGGAGTCCCCGTCGTTATGGGCGAGCCGCTCGGGGCACCCGCACCGCCGCGGGAGAGC TGGAACTCGGGGGTGCTCTCCTGCCTCGGCCGCAACGACGAGTTCTGCAGCAGCGACGTCGAAGTGTGTCTTCTTGGAAGCATAGCACCATGTGTGCTGTATGGTAGTAATGTTGAGAGGTTTGCAGCCAGACCAGGAACTTTTGCAAACAGCT GCTTGCCTTAC ] [+] EMBL BI812585 [ aATAGCCCCACTGGTTCTCTCATCACACTCGTACAGCGATTCGCTCGACGATACACATCTTGAGGGTAGCTTTTGAGGCTTTCACTAAGCACATGTGGGTGCT CCATGGCCTTGTTGAGGATGAGGGGAACCGTGAGCACCTGGAGGTTGCCTGCGACCTTGCAACTCACTACTTCTGTCACCC TTGTGCGCTCTGCCAGGAGGGACGCGAGCTGCGGCGCAGGGTCCCCCATCCTGGCTTCAACGGGCGATCTGTCTTGGTCATGACGCCACC AAGGAGCAGACTATGGGTCGTGGCATGTGAACCGTGCCAAACATCTGCTCTGCTCTATTTGCACTTGAGCTATTATGTGATGAATGTTCTCTACTGCCTTGGTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGATATGGGATCATGATGGACCATGGAAACTCCAGCCTGTTTCTCTGAAaaaaa ] [+] EMBL AU031065 [ AGGGGAACCGTGAGCACCTGGAGNTTGCCTGCGACTTTNCAACTCACTACTTCTGTCACCCTTTGTGCGCTCTGCCAGGAGGGACGCGAGCTGCGGCGCAGGGTCCCCCATCCTGGCTTCAACGGGCGATCTGTCTTGGTCATGACGCCACCAAAGGAGCAGACTATGGGTCGTGGCATGTGAACCGTGCCAAACATCTGCTCTGCTCTATTTGCACTTGAGCTATTATGTGATGAATGTTCTCTACTGCCTTGGTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGATATGGGATCATGATGGACAATGGAAACTCCAGCCTGTTTCTCTGAATTGTGTTGATCGTCTTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTAATACTGTAaaaa ] [+] EMBL AU181901 [ TGCGACCTTGCAACTCACTACTTCTGTCACCC TTGTGCGCTCTGCCAGGAGGGACGCGAGCTGCGGCGCAGGGTCCCCCATCCTGGCTTCAACGGGCGATCTGTCTTGGTCATGACGCCACCAAAGGAGCAGACTATGGGTCGTGGCATGTGAACCGTGCCAAACATCTGCTCTGCTCTATTTGCACTTGAGCTATTATGTGATGAATGTTCTCTACTGCCTTGGTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGATATGGGATCATGATGGACAATGGAAACTCCAGCCTGTTTCTCTGAATTGTGTTGATCGTCTTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTAATACTGTATCACGTTTGTGTTGGCAATCCACTTTTAAACTTAAAAAA ] [+] EMBL AU030912 [ nGCTGCGGCGCAGGGTCCCCCATCCTGGCTTCAACGGGCGATCTGTCTTGGTCATGACGCCACCAAAGGNGCAGACTATGGGTCGTGGCATGTGAACCGTGCCAAACATCTGCTCTGCTCTATTTGCACTTGAGCTATTATGTGATGAATGTTCTCTACTGCCTTGGTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGATATGGGATCATGATGGACAATGGAAACTCCAGCCTGTTTCTCTGAATTGTGTTGATCGTCTTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTNATNCTGTAaaaa ] [+] EMBL CF318870 [ GCCTGTTTCTCTGAATTGTGTTGATCGTCTTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTAATACTGTATCACGTTTGTGTTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTGGGCTTACCTAACCTTATCTTAAACAAAAAGGGAAAATTCCGGGCCCTAAAATAAAATCCCCCTTATAGGAAGTCTTTTAAAAATCAATGGCCCGTGTTTTAAAAACTTGGAAATGGAAAAAACCTTGGCTTACCCAAATTAAATCCCTTTGAAAAAAATCCCCTTTTCCCAATTTGGCAAAAAACAAAAAAGGCCCCAACAAATCCCCTTTCCAAAAATTTGCCCACCTTATACTACCGGAATTTAAAGGTTAACCCCTAA] consensusID : consensus_12261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [GTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGATATGGGATCATGATGGACCATGGAAACTCCAGCCTGTTTCTCTGAATTCTGTTGATCGTCTTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTAATACTGTATCACGTTTGTGTTGGCAATCCACTTTTAAACTTATCGATGTGAAGCAGATGTGTCAATGGGCACCCTTGCGGCCTTGCCTATTTGAAACTGCCACTCATGCTGTTTATAAATCTGCTGGAAGTTGTGAAA] [+] EMBL BI806022 [GTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGATATGGGATCATGATGGACCATGGAAACTCCAGCCTGTTTCTCTGAATTCTGTTGATCGTCTTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTAATACTGTATCACGTTTGTGTTGGCAATCCACTTTTAAACTTATCGATGTGAAGCAGATGTGTCAATGGGCACCCTTGCGGCCTTGCCTATTTGAAACTGCCACTCATGCTGTTTATAAATCTGCTGGAAGTTGTGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12261#0 CGCTGCGAAGCCATCTTCTTCTCGGTCTCCACGCGCTTTCACCTCCGTATTTTACTCGCG 60 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 CCCTTCTCTCTCTCCTCGACCTCATTCGCCTCGCCTCGCGTCTCGTCTCGTTCGCCCCTC 120 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 GCCACCACGCAACACGCCATGGGCGCGGCCGACGACGCCAACCACCGCCACGAGGAGGCC 180 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 AGCCCCCTCCTGCCACCGGGCGGCGGCGGCGGCGGCGGCAAGAAGCTCCACCAGTCTCCG 240 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 CCTCCATCGCCTCCGGAGGCAGCCAAGTGCTGCGCCGATGGAGTCCCCGTCGTTATGGGC 300 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 GAGCCGCTCGGGGCACCCGCACCGCCGCGGGAGAGCTGGAACTCGGGGGTGCTCTCCTGC 360 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 CTCGGCCGCAACGACGAGTTCTGCAGCAGCGACGTCGAAGTGTGTCTTCTTGGAAGCATA 420 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 GCACCATGTGTGCTGTATGGTAGTAATGTTGAGAGGTTTGCAGCCAGACCAGGAACTTTT 480 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 GCAAACAGCTGCTTGCCTTACACTGGCCTCTATATGCTTGGGAATGCTCTCTTCGGGTGG 540 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 AACTGCATAGCCCCATGGTTCTCTCATCACACTCGTACAGCTATTCGTCGACGATACAAT 600 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 CTTGAGGGTAGCTTTGAGGCTTTCACTAAGCAATGTGGGTGCTGCCATGGCCTTGTTGAG 660 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 GATGAGGGGAACCGTGAGCACCTGGAGGTTGCCTGCGACCTTGCAACTCACTACTTCTGT 720 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 CACCCTTGTGCGCTCTGCCAGGAGGGACGCGAGCTGCGGCGCAGGGTCCCCCATCCTGGC 780 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 TTCAACGGGCGATCTGTCTTGGTCATGACGCCACCAAAGGAGCAGACTATGGGTCGTGGC 840 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 ATGTGAACCGTGCCAAACATCTGCTCTGCTCTATTTGCACTTGAGCTATTATGTGATGAA 900 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 TGTTCTCTACTGCCTTGGTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGA 960 consensus_12261#1 -----------------GTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGA 43 ******************************************* consensus_12261#0 TATGGGATCATGATGGACAATGGAAACTCCAGCCTGTTTCTCTGAATTGTGTTGATCGTC 1020 consensus_12261#1 TATGGGATCATGATGGACCATGGAAACTCCAGCCTGTTTCTCTGAATTCTGTTGATCGTC 103 ****************** ***************************** *********** consensus_12261#0 TTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTA 1080 consensus_12261#1 TTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTA 163 ************************************************************ consensus_12261#0 ATACTGTATCACGTTTGTGTTGGCAATCCACTTTTAAACTTAAAAAAAAAAAAAAAAAAA 1140 consensus_12261#1 ATACTGTATCACGTTTGTGTTGGCAATCCACTTTTAAACTTATCGATGTGAAGCAGATGT 223 ****************************************** * ** * * consensus_12261#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTC 1200 consensus_12261#1 GTCAATGGGCACCCTTGCGGCCTTGCCTATTTGAAACTGCCACTCATG-----CTGTTTA 278 ** * * *** * * * * * consensus_12261#0 TGGGCTTACCTAACCTTATCTTAAACAAAAAGGGAAAATTCCGGGCCCTAAAATAAAATC 1260 consensus_12261#1 TAAATCTGCTGGAAGTTGTGAAA------------------------------------- 301 * * * * ** * * consensus_12261#0 CCCCTTATAGGAAGTCTTTTAAAAATCAATGGCCCGTGTTTTAAAAACTTGGAAATGGAA 1320 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 AAAACCTTGGCTTACCCAAATTAAATCCCTTTGAAAAAAATCCCCTTTTCCCAATTTGGC 1380 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 AAAAAACAAAAAAGGCCCCAACAAATCCCCTTTCCAAAAATTTGCCCACCTTATACTACC 1440 consensus_12261#1 ------------------------------------------------------------ consensus_12261#0 GGAATTTAAAGGTTAACCCCTAA 1463 consensus_12261#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||