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Oryza sativa
cluster # 12266 cluster # 12266       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12266#0 length = 1255 sequences # 4  
consensus_12266#1 length = 1248 sequences # 6  

consensusID : consensus_12266#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1255
fasta sequence
                              [ACAAAAAGCTTCTCTTTCCCTTCTCCTCCTCGGTGATCTGTCTCGCCGGGGCATCTCGAAAAGCATCCGACTCCGACGCCGCCGCGCGCCACCACCCGGCCGATCGCCGACGCCGCAGCCGCTGGAAGCAGCAGGGACGACGGAGAATCGGAGATGGACATCGAGGCGTTCATCCACGGCGGAAGCGGGGGCGGCGACGCCGACGCCGACCACCCGCTCGGCATCTTCTCCGCCGCCGACCTCTCCGGCTTCGGCTTCGCGGACTCGAGCACCATCACAGGGGGCATTCCCAATCACATATGGCCCCAGTCCCAGAACCTGAACGCACGGCATCCTGCGGTCTCCACGACAATTGAGTCGCAGTCATCAATCTGTGCAGCAGCAAGTCCCACATCAGCTACCAATCTGAACATGAAGGAGAGCCAAACTCTGGGAGGCACAAGTGGTTCGGATTCTGAAAGTGAATCGCTGTTGGATATAGAGGGTGGTCCATGCGAACAAAGCACGAACCCGTTGGACGTGAAGAGAGTGAGAAGGATGGTGTCCAATCGGGAGTCTGCTCGGCGATCGAGGAAGAGAAAGCAAGCTCACTTAGCTGATCTCGAGTCACAGGTTGACCAGCTCCGGGGCGAAAACGCATCGCTTTTCAAGCAGTTGACGGATGCCAACCAGCAATTCACAACTTCTGTCACGGACAACAGAATCCTCAAATCAGACGTTGAGGCCCTCCGGGTCAAGGTGAAGATGGCGGAGGACATGGTGGCGCGGGGGGCGCTGTCGTGCGGGCTCGGCCACCTGGGCGGGCTGTCGCCGGCGCTGAACCCCCGGCAGGCGTGCCGCGTCCCCGACGTGCTCGCCGGCCTGGACTACGCCGGCGACGACCCCTTCACGGCCGGGCTGTCCCAGCCGGAGCAGTT-GCAGATGCCCGGCGGCGAGGTGGTTGACGCCTGGGGCTGGGACAACCACCCCAACGGCGGCATGTCCAAGTGAAACTACTGGTCCTACTTCTATGTCAGCTCAGCTACGTTTGAAACGTGATGTGTCCAAGTGAACGGACTTGAGTTTTTCAGAGTCCTCGTGTCGAAGTGTCATGCACTCTTCCCTATTCCTGTAATAGAACTGACTAGCTAAGAGACTGAAAGTCTGAAACTACGAAGTATAAATGTGGTGGAATTTGGAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AB053473             [ACAAAAAGCTTCTCTTTCCCTTCTCCTCCTCGGTGATCTGTCTCGCCGGGGCATCTCGAAAAGCATCCGACTCCGACGCCGCCGCGCGCCACCACCCGGCCGATCGCCGACGCCGCAGCCGCTGGAAGCAGCAGGGACGACGGAGAATCGGAGATGGACATCGAGGCGTTCATCCACGGCGGAAGCGGGGGCGGCGACGCCGACGCCGACCACCCGCTCGGCATCTTCTCCGCCGCCGACCTCTCCGGCTTCGGCTTCGCGGACTCGAGCACCATCACAGGGGGCATTCCCAATCACATATGGCCCCAGTCCCAGAACCTGAACGCACGGCATCCTGCGGTCTCCACGACAATTGAGTCGCAGTCATCAATCTGTGCAGCAGCAAGTCCCACATCAGCTACCAATCTGAACATGAAGGAGAGCCAAACTCTGGGAGGCACAAGTGGTTCGGATTCTGAAAGTGAATCGCTGTTGGATATAGAGGGTGGTCCATGCGAACAAAGCACGAACCCGTTGGACGTGAAGAGAGTGAGAAGGATGGTGTCCAATCGGGAGTCTGCTCGGCGATCGAGGAAGAGAAAGCAAGCTCACTTAGCTGATCTCGAGTCACAGGTTGACCAGCTCCGGGGCGAAAACGCATCGCTTTTCAAGCAGTTGACGGATGCCAACCAGCAATTCACAACTTCTGTCACGGACAACAGAATCCTCAAATCAGACGTTGAGGCCCTCCGGGTCAAGGTGAAGATGGCGGAGGACATGGTGGCGCGGGGGGCGCTGTCGTGCGGGCTCGGCCACCTGGGCGGGCTGTCGCCGGCGCTGAACCCCCGGCAGGCGTGCCGCGTCCCCGACGTGCTCGCCGGCCTGGACTACGCCGGCGACGACCCCTTCACGGCCGGGCTGTCCCAGCCGGAGCAGTT GCAGATGCCCGGCGGCGAGGTGGTTGACGCCTGGGGCTGGGACAACCACCCCAACGGCGGCATGTCCAAGTGAAACTACTGGTCCTACTTCTATGTCAGCTCAGCTACGTTTGAAACGTGATGTGTCCAAGTGAACGGACTTGAGTTTTTCAGAGTCCTCGTGTCGAAGTGTCATGCACTCTTCCCTATTCCTGTAATAGAACTGACTAGCTAAGAGACTGAAAGTCTGAAACTACGAAGTATAAATGTGGTGGAATTTGGAACTAAAAAAAAA                                                                ]
[+] EMBL AK069575             [                                       GTCTCGCCGGGGCATCTCGAAAAGCATCCGACTCCGACGCCGCCGCGCGCCACCACCCGGCCGATCGCCGACGCCGCAGCCGCTGGAAGCAGCAGGGACGACGGAGAATCGGAGATGGACATCGAGGCGTTCATCCACGGCGGAAGCGGGGGCGGCGACGCCGACGCCGACCACCCGCTCGGCATCTTCTCCGCCGCCGACCTCTCCGGCTTCGGCTTCGCGGACTCGAGCACCATCACAGGGGGCATTCCCAATCACATATGGCCCCAGTCCCAGAACCTGAACGCACGGCATCCTGCGGTCTCCACGACAATTGAGTCGCAGTCATCAATCTGT   GCAGCAAGTCCCACATCAGCTACCAATCTGAACATGAAGGAGAGCCAAACTCTGGGAGGCACAAGTGGTTCGGATTCTGAAAGTGAATCGCTGTTGGATATAGAGGGTGGTCCATGCGAACAAAGCACGAACCCGTTGGACGTGAAGAGAGTGAGAAGGATGGTGTCCAATCGGGAGTCTGCTCGGCGATCGAGGAAGAGAAAGCAAGCTCACTTAGCTGATCTCGAGTCACAGGTTGACCAGCTCCGGGGCGAAAACGCATCGCTTTTCAAGCAGTTGACGGATGCCAACCAGCAATTCACAACTTCTGTCACGGACAACAGAATCCTCAAATCAGACGTTGAGGCCCTCCGGGTCAAGGTGAAGATGGCGGAGGACATGGTGGCGCGGGGGGCGCTGTCGTGCGGGCTCGGCCACCTGGGCGGGCTGTCGCCGGCGCTGAACCCCCGGCAGGCGTGCCGCGTCCCCGACGTGCTCGCCGGCCTGGACTACGCCGGCGACGACCCCTTCACGGCCGGGCTGTCCCAGCCGGAGCAGTT GCAGATGCCCGGCGGCGAGGTGGTTGACGCCTGGGGCTGGGACAACCACCCCAACGGCGGCATGTCCAAGTGAAACTACTGGTCCTACTTCTATGTCAGCTCAGCTACGTTTGAAACGTGATGTGTCCAAGTGAACGGACTTGAGTTTTTCAGAGTCCTCGTGTCGAAGTGTCATGCACTCTTCCCTATTCCTGTAATAGAACTGACTAGCTAAGAGACTGAAAGTCTGAAACTACGAAGTATAAATGTGGTGGA                                                                                   ]
[+] EMBL OSRITA2PR            [                                                                                                                                                                                                                                                                                                                                                                                                               ACCAATCTGAACATGAAGGAGAGCCAAACTCTGGGAGGCACAAGTGGTTCGGATTCTGAAAGTGAATCGCTGTTGGATATAGAGGGTGGTCCATGCGAACAAAGCACGAACCCGTTGGACGTGAAGAGAGTGAGAAGGATGGTGTCCAATCGGGAGTCTGCTCGGCGATCGAGGAAGAGAAAGCAAGCTCACTTAGCTGATCTCGAGTCACAGGTTGACCAGCTCCGGGGCGAAAACGCATCGCTTTTCAAGCAGTTGACGGATGCCAACCAGCAATTCACAACTTCTGTCACGGACAACAGAATCCTCAAATCAGACGTTGAGGCCCTCCGGGTCAAGGTGAAGATGGCGGAGGACATGGTGGCGCGGGGGGCGCTGTCGTGCGGGCTCGGCCACCTGGGCGGGCTGTCGCCGGCGCTGAACCCCCGGCAGGCGTGCCGCGTCCCCGACGTGCTCGCCGGCCTGGACTACGCCGGCGACGACCCCTTCACGGCCGGGCTGTCCCAGCCGGAGCAGTT GCAGATGCCCGGCGGCGAGTTGGTTGACGCCTGGGGCTGGGACAACCACCCCAACGGCGGCATGTCCAAGTGAAACTACTGGTCCTACTTCTATGTCAGCTCAGCTACGTTTGAAACGTGATGTGTCCAAGTGAACGGACTTGAGTTTTTCAGAGTCCTCGTGTCGAAGTGTCATGCACTCTTCCCTATTCCTGTAATAGAACTGACTAGCTAAGAGACTGAAAGTCTGAAACTACGAAGTATAAATGTGGTGGAATTTGGAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI795772             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTGGACTACGCCGGCGACGACCCCTTCACGGCCGGGCTGTCCCAGCCGGAGCAGTTGGCAGATGCCCGGCGGCGAGGTGGTTGACGCCTGGGGCTGGGACAACCACCCCAACGGCGGCATGTCCAAGTGAAACTACTGGTCCTACTTCTATGTCAGCTCAGCTACGTTTGAAACGTGATGTGTCCAAGTGAACGGACTTGAGTTTTTCAGAGTCCTCGTGTCGAAGTGTCATGCACTCTTCCCTATTCCTGTAATAGAACTGACTAGCTAAGAGACTGAAAGTCTGAAACTACGAAGTATAAATGTGGTGGAATTTGGAACTAAAAA                                                                    ]


>consensus_12266#0 ACAAAAAGCTTCTCTTTCCCTTCTCCTCCTCGGTGATCTGTCTCGCCGGGGCATCTCGAA AAGCATCCGACTCCGACGCCGCCGCGCGCCACCACCCGGCCGATCGCCGACGCCGCAGCC GCTGGAAGCAGCAGGGACGACGGAGAATCGGAGATGGACATCGAGGCGTTCATCCACGGC GGAAGCGGGGGCGGCGACGCCGACGCCGACCACCCGCTCGGCATCTTCTCCGCCGCCGAC CTCTCCGGCTTCGGCTTCGCGGACTCGAGCACCATCACAGGGGGCATTCCCAATCACATA TGGCCCCAGTCCCAGAACCTGAACGCACGGCATCCTGCGGTCTCCACGACAATTGAGTCG CAGTCATCAATCTGTGCAGCAGCAAGTCCCACATCAGCTACCAATCTGAACATGAAGGAG AGCCAAACTCTGGGAGGCACAAGTGGTTCGGATTCTGAAAGTGAATCGCTGTTGGATATA GAGGGTGGTCCATGCGAACAAAGCACGAACCCGTTGGACGTGAAGAGAGTGAGAAGGATG GTGTCCAATCGGGAGTCTGCTCGGCGATCGAGGAAGAGAAAGCAAGCTCACTTAGCTGAT CTCGAGTCACAGGTTGACCAGCTCCGGGGCGAAAACGCATCGCTTTTCAAGCAGTTGACG GATGCCAACCAGCAATTCACAACTTCTGTCACGGACAACAGAATCCTCAAATCAGACGTT GAGGCCCTCCGGGTCAAGGTGAAGATGGCGGAGGACATGGTGGCGCGGGGGGCGCTGTCG TGCGGGCTCGGCCACCTGGGCGGGCTGTCGCCGGCGCTGAACCCCCGGCAGGCGTGCCGC GTCCCCGACGTGCTCGCCGGCCTGGACTACGCCGGCGACGACCCCTTCACGGCCGGGCTG TCCCAGCCGGAGCAGTTGCAGATGCCCGGCGGCGAGGTGGTTGACGCCTGGGGCTGGGAC AACCACCCCAACGGCGGCATGTCCAAGTGAAACTACTGGTCCTACTTCTATGTCAGCTCA GCTACGTTTGAAACGTGATGTGTCCAAGTGAACGGACTTGAGTTTTTCAGAGTCCTCGTG TCGAAGTGTCATGCACTCTTCCCTATTCCTGTAATAGAACTGACTAGCTAAGAGACTGAA AGTCTGAAACTACGAAGTATAAATGTGGTGGAATTTGGAACTAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_12266#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1248
fasta sequence
                              [AGCTTTGTGGGGGGCGAAAAAGAGGAGCTTTCCCTTCTCCTTCTTCTCCTTCTCCTCCCTCGGTGATCTGCCTCGCTGGGGCATCTCTAAAAGCATCCGACTCCGACGCCACCACCACCAGTTCACCACCGCTGAAAGAATCAGCAGCAGCAGCAGAGGCCACACGAGGAGATGAAGAAGTGCCCGTCGGAGCTGAACTTCGAGGCGTTCTTCCACGGCGAGAGGGGGGAGGACGACGCCGACGCCGCCGCCGACCAGAAGCCCGGCGGCGGCCCGCACCCGCCGCCGTTCGCCATGTTCTCCGCCGCCGACCTCTCCAGCTTCGGCTTCGCGGACTCGGTGACGAGCACCATCACTGGGGTCATTCCCAATCACATATGGCCCCAGTCCCAGAGCCTCAACGCACGGCATCCTGCAGTCTACACAATTGAGTCGCAATCATCAATCTGTGCAGCAGCAAGTCCCACGTCAGCTACCACTCTGAACATGAAGGAGAGCCAAACTCTGGGAGGCACAAGTGGTTCAGATTCTGACAGTGAGTCGCTGTTGGATATAGAGGGCGGTCCATGCGAACAAAGCACAAACCCACTGGACGTTAAGAGAATGAGAAGGATGGTTTCCAACCGGGAGTCTGCTCGTCGATCAAGGAAGAGAAAGCAAGCTCACTTAGCTGATCTCGAGACGCAGGTTGACCAGCTCCGGGGCGAAAACGCATCGCTTTTCAAGCAGTTGACAGATGCCAATCAGCAATTCACGACGGCGGTCACGGACAACAGAATCCTCAAATCAGACGTGGAGGCCCTCCGGGTCAAGGTGAAGATGGCGGAGGACATGGTGGCGCGGGGGGCGCTGTCGTGCGGCCTCGGCCACCTGGGCGGGCTGTCGCCGGCGCTGAACCCCCGGCAGGGGGCGTGCCGCGTCCCCGACGTGCTCACCGGGCTGGACTACGCCGGCGACGACCCCTTCACCGGGCTGTCCCCGCCGGAGCAGGTGCAGATGCCCGGCGGTGGCGAGGTGGGTGACGCCTGGGGCTGGGACAACCACTCCAATGGCGCCATGTCCAAGTGAAAACTACTTCTTACTGCTTTGTCAGCTCAGCTACGTATAAAAATGTGATGTCCCAAGTGAACGGACTTGAGTTTTTCAGAGTCCTCGTGTCGTGTCAAGTGTCGTCCTGTAATAGAACTGACTAGCTATATATAGTACACAGTATTTGGTAAGAGACTGAAAAACTACGAAGTATAAATG]

[+] EMBL OSRITA1A             [AGCTTTGTGGGGGGCGAAAAAGAGGAGCTTTCCCTTCTCCTTCTTCTCCTTCTCCTCCCTCGGTGATCTGCCTCGCTGGGGCATCTCTAAAAGCATCCGACTCCGACGCCACCACCACCAGTTCACCACCTCTGGAAGAATCAGCAGCAGCAGCAGAGACCACACGAGGAGATGAAGAAGTGCCCGTCGGAGCTGAACTTCGAGGCGTTCTTCCACGGCGAGAGGGGGGAGGACGACGCCGACGCCGCCGCCGACCAGAAGCCCGGCGGCGGCCCGCACCCGCCGCCGTTCGCCATGTTCTCCGCCGCCGACCTCTCCAGCTTCGGCTTCGCGGACTCGGTGACGAGCACCATCACTGGGGTCATTCCCAATCACATATGGCCCCAGTCCCAGAGCCTCAACGCACGGCATCCTGCAGTCTACACAATTGAGTCGCAATCATCAATCTGTGCAGCAGCAAGTCCCACGTCAGCTACCACTCTGAACATGAAGGAGAGCCAAACTCTGGGAGGCACAAGTGGTTCAGATTCTGACAGTGAGTCGCTGTTGGATATAGAGGGCGGTCCATGCGAACAAAGCACAAACCCACTGGACGTTAAGAGAATGAGAAGGATGGTTTCCAACCGGGAGTCTGCTCGTCGATCAAGGAAGAGAAAGCAAGCTCACTTAGCTGATCTCGAGACGCAGGTTGACCAGCTCCGGGGCGAAAACGCATCGCTTTTCAAGCAGTTGACAGATGCCAATCAGCAATTCACGACGGCGGTCACGGACAACAGAATCCTCAAATCAGACGTGGAGGCCCTCCGGGTCAAGGTGAAGATGGCGGAGGACATGGTGGCGCGGGGGGCGCTGTCGTGCGGCCTCGGCCACCTGGGCGGGCTGTCGCCGGCGCTGAACCCCCGGCAGGGGGCGTGCCGCGTCCCCGACGTGCTCACCGGGCTGGACTACGCCGGCGACGACCCCTTCACCGGGCTGTCCCCGCCGGAGCAGGTGCAGATGCCCGGCGGTGGCGAGGTGGGTGACGCCTGGGGCTGGGACAACCACTCCAATGGCGCCATGTCCAAGTGAAAACTACTTCTTACTGCTTTGTCAGCTCAGCTACGTATAAAAATGTGATGTCCCAAGTGAACGGACTTGAGTTTTTCAGAGTCCTCGTGTCGTGTCAAGTGTCGTCCTGTAATAGAACTGACTAGCTATATATAGTACA                                         ]
[+] EMBL AK070674             [                                                           TCGGTGATCTGCCTCGCTGGGGCATCTCTAAAAGCATCCGACTCCGACGCCACCACCACCAGTTCACCACCGCTGAAAGAATCAGCAGCAGCAGCAGAGGCCACACGAGGAGATGAAGAAGTGCCCGTCGGAGCTGAACTTCGAGGCGTTCTTCCACGGCGAGAGGGGGGAGGACGACGCCGACGCCGCCGCCGACCAGAAGCCCGGCGGCGGCCCGCACCCGCCGCCGTTCGCCATGTTCTCCGCCGCCGACCTCTCCAGCTTCGGCTTCGCGGACTCGGTGACGAGCACCATCACTGGGGTCATTCCCAATCACATATGGCCCCAGTCCCAGAGCCTCAACGCACGGCATCCTGCAGTCTACACAATTGAGTCGCAATCATCAATCTGTGCAGCAGCAAGTCCCACGTCAGCTACCACTCTGAACATGAAGGAGAGCCAAACTCTGGGAGGCACAAGTGGTTCAGATTCTGACAGTGAGTCGCTGTTGGATATAGAGGGCGGTCCATGCGAACAAAGCACAAACCCACTGGACGTTAAGAGAATGAGAAGGATGGTTTCCAACCGGGAGTCTGCTCGTCGATCAAGGAAGAGAAAGCAAGCTCACTTAGCTGATCTCGAGACGCAGGTTGACCAGCTCCGGGGCGAAAACGCATCGCTTTTCAAGCAGTTGACAGATGCCAATCAGCAATTCACGACGGCGGTCACGGACAACAGAATCCTCAAATCAGACGTGGAGGCCCTCCGGGTCAAGGTGAAGATGGCGGAGGACATGGTGGCGCGGGGGGCGCTGTCGTGCGGCCTCGGCCACCTGGGCGGGCTGTCGCCGGCGCTGAACCCCCGGCAGGGGGCGTGCCGCGTCCCCGACGTGCTCACCGGGCTGGACTACGCCGGCGACGACCCCTTCACCGGGCTGTCCCCGCCGGAGCAGGTGCAGATGCCCGGCGGTGGCGAGGTGGGTGACGCCTGGGGCTGGGACAACCACTCCAATGGCGCCATGTCCAAGTGAAAACTACTTCTTACTGCTTTGTCAGCTCAGCTACGTATAAAAATGTGATGTCCCAAGTGAACGGACTTGAGTTTTTCAGAGTCCTCGTGTCGTGTCAAGTGTCGTCCTGTAATAGAACTGACTAGCTATATATAGTACACAGTATTTGGTAAGAGACTGAAAAACTACGAAGTATAAATG]
[+] EMBL AU065418             [                                                                                                                             tatCCGCTGAAAGAATCAGCAGCAGCAGCAGAGGCCACACGAGGAGATGAAGAAGTGCCCGTCGGAGCTGAACTTCGAGGCGTTCTTCCACGGCGAGAGGGGGGAGGACGACGNCGACGNCGCCGCCGACCAGAAGCCCNGCGGCGGCCCGCACCCGCCGCCGTTCGCCATGTTCTCCGCCGGCGACCTCTCCAGCTTCGGCTTCGCGGACTCGGTGACGAGCACCATCACTGGGGTCATTCCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU032215             [                                                                                                                         ncacanctCGCTGAAAGAATCAGCAGCAGCAGCAGAGGCCACACGAGGAGATGAAGAAGTGCCCGTCGGAGCTGANCTTCGAGGCGTTCTTCCACGACGAGAGGGTGGAGGACGACGACGACGTCGNCGACGACCAGAAGCCCNGCGGCGGCCCGCACCCGTCGACGTTCGCCATGTTCTCCGCCGCCGACCTCTCCANCTTCGGCTTCGCGGACTCGGTGACGAGCACCATCANTGGGGTCATTCCCAATCACATATNGTCCCAGTACCAGAGTCTCAACGNACGTCATCCTGCAGTCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU184647             [                                                                                                                                       AAGAATCAGCAGCAGCAGCAGAGGCCACACGAGGAGATGAAGAAGTGCCCGTCGGAGCTGAACTTCGAGGCGTTCTTCCACGGCGAGAGGGGGGAGGACGACGCCGACGCCGCCGCCGACCAGAAGCCCGGCGGCGGCCCGCACCCGCCGCCGTTCGCCATGTTCTCCGCCGCCGACCTCTCCAGCTTCGGCTTCGCGGACTCGGTGACGAGCACCATCACTGGGGTCATTCCCAATCACATATGGCCCCAGTCCCAGAGCCTCAACGCACGGNATCCTGCAGTCTACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA766185             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACTGCTTTGT NGCTCAGCTACGTATAAAAATGTGATGTCCCAAGTGAACGGACTTGAGTTTTTCAGAGTCCTCGTGTCGTGTCAAGTGTCGTCCTGTAATAGAACTGACTAGCTATATATAGTACACAGTATTTGGTAAGAG                         ]


>consensus_12266#1 AGCTTTGTGGGGGGCGAAAAAGAGGAGCTTTCCCTTCTCCTTCTTCTCCTTCTCCTCCCT CGGTGATCTGCCTCGCTGGGGCATCTCTAAAAGCATCCGACTCCGACGCCACCACCACCA GTTCACCACCGCTGAAAGAATCAGCAGCAGCAGCAGAGGCCACACGAGGAGATGAAGAAG TGCCCGTCGGAGCTGAACTTCGAGGCGTTCTTCCACGGCGAGAGGGGGGAGGACGACGCC GACGCCGCCGCCGACCAGAAGCCCGGCGGCGGCCCGCACCCGCCGCCGTTCGCCATGTTC TCCGCCGCCGACCTCTCCAGCTTCGGCTTCGCGGACTCGGTGACGAGCACCATCACTGGG GTCATTCCCAATCACATATGGCCCCAGTCCCAGAGCCTCAACGCACGGCATCCTGCAGTC TACACAATTGAGTCGCAATCATCAATCTGTGCAGCAGCAAGTCCCACGTCAGCTACCACT CTGAACATGAAGGAGAGCCAAACTCTGGGAGGCACAAGTGGTTCAGATTCTGACAGTGAG TCGCTGTTGGATATAGAGGGCGGTCCATGCGAACAAAGCACAAACCCACTGGACGTTAAG AGAATGAGAAGGATGGTTTCCAACCGGGAGTCTGCTCGTCGATCAAGGAAGAGAAAGCAA GCTCACTTAGCTGATCTCGAGACGCAGGTTGACCAGCTCCGGGGCGAAAACGCATCGCTT TTCAAGCAGTTGACAGATGCCAATCAGCAATTCACGACGGCGGTCACGGACAACAGAATC CTCAAATCAGACGTGGAGGCCCTCCGGGTCAAGGTGAAGATGGCGGAGGACATGGTGGCG CGGGGGGCGCTGTCGTGCGGCCTCGGCCACCTGGGCGGGCTGTCGCCGGCGCTGAACCCC CGGCAGGGGGCGTGCCGCGTCCCCGACGTGCTCACCGGGCTGGACTACGCCGGCGACGAC CCCTTCACCGGGCTGTCCCCGCCGGAGCAGGTGCAGATGCCCGGCGGTGGCGAGGTGGGT GACGCCTGGGGCTGGGACAACCACTCCAATGGCGCCATGTCCAAGTGAAAACTACTTCTT ACTGCTTTGTCAGCTCAGCTACGTATAAAAATGTGATGTCCCAAGTGAACGGACTTGAGT TTTTCAGAGTCCTCGTGTCGTGTCAAGTGTCGTCCTGTAATAGAACTGACTAGCTATATA TAGTACACAGTATTTGGTAAGAGACTGAAAAACTACGAAGTATAAATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12266#0      -------------------ACAAAAAGCTTCTCTTTC----------CCTTCTCCTCC-T 30
consensus_12266#1      AGCTTTGTGGGGGGCGAAAAAGAGGAGCTTTCCCTTCTCCTTCTTCTCCTTCTCCTCCCT 60
                                          *  *  *****  * ***          *********** *

consensus_12266#0      CGGTGATCTGTCTCGCCGGGGCATCTCGAAAAGCATCCGACTCCGACGCCGCCGCGCGCC 90
consensus_12266#1      CGGTGATCTGCCTCGCTGGGGCATCTCTAAAAGCATCCGACTCCGACGCCACCAC-CACC 119
                       ********** ***** ********** ********************** ** * * **

consensus_12266#0      ACCACCCGGCCGATCGCCGACGCCGCAGCCGCTG--GAAGCAGCA-GGGACGACGGAGAA 147
consensus_12266#1      AGTTCACCACCGCTGAAAGAATCAGCAGCAGCAGCAGAGGCCACACGAGGAGATGAAGAA 179
                       *   * *  *** *    **  * ***** ** *  ** **  ** * *  ** * ****

consensus_12266#0      -------TCGGAGATGGACATCGAGGCGTTCATCCACGGCGGAAGCGGGGGCGGCGACGC 200
consensus_12266#1      GTGCCCGTCGGAGCTGAACTTCGAGGCGTTCTTCCACGGCGAGAGGGGGGAGGACGACGC 239
                              ****** ** ** *********** *********  ** ****  * ******

consensus_12266#0      CGACGCCGAC---------------------------CACCCGC------TCGGCATCTT 227
consensus_12266#1      CGACGCCGCCGCCGACCAGAAGCCCGGCGGCGGCCCGCACCCGCCGCCGTTCGCCATGTT 299
                       ******** *                           *******      *** *** **

consensus_12266#0      CTCCGCCGCCGACCTCTCCGGCTTCGGCTTCGCGGACTCG------AGCACCATCACAGG 281
consensus_12266#1      CTCCGCCGCCGACCTCTCCAGCTTCGGCTTCGCGGACTCGGTGACGAGCACCATCACTGG 359
                       ******************* ********************      *********** **

consensus_12266#0      GGGCATTCCCAATCACATATGGCCCCAGTCCCAGAACCTGAACGCACGGCATCCTGCGGT 341
consensus_12266#1      GGTCATTCCCAATCACATATGGCCCCAGTCCCAGAGCCTCAACGCACGGCATCCTGCAGT 419
                       ** ******************************** *** ***************** **

consensus_12266#0      CTCCACGACAATTGAGTCGCAGTCATCAATCTGTGCAGCAGCAAGTCCCACATCAGCTAC 401
consensus_12266#1      CTACAC---AATTGAGTCGCAATCATCAATCTGTGCAGCAGCAAGTCCCACGTCAGCTAC 476
                       ** ***   ************ ***************************** ********

consensus_12266#0      CAATCTGAACATGAAGGAGAGCCAAACTCTGGGAGGCACAAGTGGTTCGGATTCTGAAAG 461
consensus_12266#1      CACTCTGAACATGAAGGAGAGCCAAACTCTGGGAGGCACAAGTGGTTCAGATTCTGACAG 536
                       ** ********************************************* ******** **

consensus_12266#0      TGAATCGCTGTTGGATATAGAGGGTGGTCCATGCGAACAAAGCACGAACCCGTTGGACGT 521
consensus_12266#1      TGAGTCGCTGTTGGATATAGAGGGCGGTCCATGCGAACAAAGCACAAACCCACTGGACGT 596
                       *** ******************** ******************** *****  *******

consensus_12266#0      GAAGAGAGTGAGAAGGATGGTGTCCAATCGGGAGTCTGCTCGGCGATCGAGGAAGAGAAA 581
consensus_12266#1      TAAGAGAATGAGAAGGATGGTTTCCAACCGGGAGTCTGCTCGTCGATCAAGGAAGAGAAA 656
                        ****** ************* ***** ************** ***** ***********

consensus_12266#0      GCAAGCTCACTTAGCTGATCTCGAGTCACAGGTTGACCAGCTCCGGGGCGAAAACGCATC 641
consensus_12266#1      GCAAGCTCACTTAGCTGATCTCGAGACGCAGGTTGACCAGCTCCGGGGCGAAAACGCATC 716
                       ************************* * ********************************

consensus_12266#0      GCTTTTCAAGCAGTTGACGGATGCCAACCAGCAATTCACAACTTCTGTCACGGACAACAG 701
consensus_12266#1      GCTTTTCAAGCAGTTGACAGATGCCAATCAGCAATTCACGACGGCGGTCACGGACAACAG 776
                       ****************** ******** *********** **  * **************

consensus_12266#0      AATCCTCAAATCAGACGTTGAGGCCCTCCGGGTCAAGGTGAAGATGGCGGAGGACATGGT 761
consensus_12266#1      AATCCTCAAATCAGACGTGGAGGCCCTCCGGGTCAAGGTGAAGATGGCGGAGGACATGGT 836
                       ****************** *****************************************

consensus_12266#0      GGCGCGGGGGGCGCTGTCGTGCGGGCTCGGCCACCTGGGCGGGCTGTCGCCGGCGCTGAA 821
consensus_12266#1      GGCGCGGGGGGCGCTGTCGTGCGGCCTCGGCCACCTGGGCGGGCTGTCGCCGGCGCTGAA 896
                       ************************ ***********************************

consensus_12266#0      CCCCCGGCAGG---CGTGCCGCGTCCCCGACGTGCTCGCCGGCCTGGACTACGCCGGCGA 878
consensus_12266#1      CCCCCGGCAGGGGGCGTGCCGCGTCCCCGACGTGCTCACCGGGCTGGACTACGCCGGCGA 956
                       ***********   *********************** **** *****************

consensus_12266#0      CGACCCCTTCACGGCCGGGCTGTCCCAGCCGGAGCAGTTGCAGATGCCCGGCGG---CGA 935
consensus_12266#1      CGACCCCTTCAC---CGGGCTGTCCCCGCCGGAGCAGGTGCAGATGCCCGGCGGTGGCGA 1013
                       ************   *********** ********** ****************   ***

consensus_12266#0      GGTGGTTGACGCCTGGGGCTGGGACAACCACCCCAACGGCGGCATGTCCAAGTGAAA-CT 994
consensus_12266#1      GGTGGGTGACGCCTGGGGCTGGGACAACCACTCCAATGGCGCCATGTCCAAGTGAAAACT 1073
                       ***** ************************* **** **** *************** **

consensus_12266#0      ACTGGTCCTACTTCTATGTCAGCTCAGCTACGTTTGAAA-CGTGATGTGTCCAAGTGAAC 1053
consensus_12266#1      ACT--TCTTACTGCTTTGTCAGCTCAGCTACGTATAAAAATGTGATGT-CCCAAGTGAAC 1130
                       ***  ** **** ** ***************** * ***  *******  **********

consensus_12266#0      GGACTTGAGTTTTTCAGAGTCCTCGTGTCGAAGTGTCATGCACTCTTCCCTATTCCTGTA 1113
consensus_12266#1      GGACTTGAGTTTTTCAGAGTCCTCGTGTCG---TGTCAAGTGTCGT--------CCTGTA 1179
                       ******************************   ***** *     *        ******

consensus_12266#0      ATAGAACTGACTAGCTAAGAGACTGAAAGTCTGAAACTACGAAGTATAAATGTGGTGGAA 1173
consensus_12266#1      ATAGAACTGACTAGCTATAT-------------ATAGTACACAGTATTTG-GTAAGAGAC 1225
                       *****************                * * ***  *****    **    ** 

consensus_12266#0      TTTGGAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1233
consensus_12266#1      TGAAAAACTACGAAGTATAAATG------------------------------------- 1248
                       *    *****  **  * ***                                       

consensus_12266#0      AAAAAAAAAAAAAAAAAAAAAA 1255
consensus_12266#1      ----------------------
                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)