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Oryza sativa
cluster # 12271 cluster # 12271       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12271#0 length = 1331 sequences # 8  
consensus_12271#1 length = 1089 sequences # 1  
consensus_12271#2 length = 646 sequences # 1  

consensusID : consensus_12271#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1331
fasta sequence
                              [CCTCGACTCCCGGACGTCTCCTCGGCGAGTTCGCCCGCCGCCTCGCCTGCGTCGATCTCCATCGCCGCCGGCGTCTGCTGCTTCCGCCGCATCCTCGCTCGCTGGTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTTGTTATCCAGCATCTTTCTTTGACAAGCCACACCTGGAAGGTGGCGACAAAGTAATTATGCCACCATCTGCTCTTGATCGGCTTGCTTCTCTGCACATTGAATATCCTATGCTGTTTGAGTTGCATAATGATGCAACTCAGCGGATTTCACACTGTGGTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGATGATGCAAAACATGCTTCTTCAAGAGGGTGACACTGTCCGTGTAAAAAATACAACCCTTCCCAAGGGTACATATGTCAAGTTGCAGCCTCACACAACTGACTTTTTGGACATCTCAAATCCGAAGGCCATCCTGGAGAAAACACTAAGAAACTTCTCTTGTTTAACCACCGGCGATAGTATCATGGTAGCTTACAACAACAAACAATACTACATTGACATTGTTGAAACAAAACCTGCTTCCGCAGTTAG-TATTATTGAGACGGACTGTGAAGTGGACTTTGCACCTCCTCTTGATTACAAAGAACCTGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGATGAAAATGCTAAAGTTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTTCTGGAAAGC-GGCTGGATGGTAAAGCCTCAAAGCTACAAGCAACAGAGGTCCCTTCTGCCTCACGTTCTTCCCCTTCAGACTCAAA-CAAAAGGGTGAATCAGGAAACGTTAGCACCAGCATCTTCAGGAGCTAGCAACTCCACACGCCAGAAAT-CAGGAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAGCATTTAGTGGGAAGAGCTACTCCTTGAAACGTTAGCT-GGATTTTGTAGCCTTAACTTTTGGAATGAGCCATCCTAATTCACTTGGTGAATGTGTGGGGCCGTCTGGCTACTCTAGCGTAGACAAATGCGTATATTCACTTTTCATACTATGAAACACTAGCATGTATATCCAAATTAAACTATATAAATGCTTTAGCGTGATGGAAATATTGCATTTACAGTTATATTTATTTACCCGCGGCTAAAAAAAAAAAAAA]

[+] EMBL AK073711             [CCTCGACTCCCGGACGTCTCCTCGGCGAGTTCGCCCGCCGCCTCGCCTGCGTCGATCTCCATCGCCGCCGGCGTCTGCTGCTTCCGCCGCATCCTCGCTCGCTGGTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTTGTTATCCAGCATCTTTCTTTGACAAGCCACACCTGGAAGGTGGCGACAAAGTAATTATGCCACCATCTGCTCTTGATCGGCTTGCTTCTCTGCACATTGAATATCCTATGCTGTTTGAGTTGCATAATGATGCAACTCAGCGGATTTCACACTGTGGTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGATGATGCAAAACATGCTTCTTCAAGAGGGTGACACTGTCCGTGTAAAAAATACAACCCTTCCCAAGGGTACATATGTCAAGTTGCAGCCTCACACAACTGACTTTTTGGACATCTCAAATCCGAAGGCCATCCTGGAGAAAACACTAAGAAACTTCTCTTGTTTAACCACCGGCGATAGTATCATGGTAGCTTACAACAACAAACAATACTACATTGACATTGTTGAAACAAAACCTGCTTCCGCAGTTAG TATTATTGAGACGGACTGTGAAGTGGACTTTGCACCTCCTCTTGATTACAAAGAACCTGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGATGAAAATGCTAAAGTTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTTCTGGAAAGT GGCTGGATGGTAAAGCCTCAAAGCTACAAGCAACAGAGGTCCCTTCTGCCTCACGTTCTTCCCCTTCAGACTCAAA CAAAAGGGTGAATCAGGAAACGTTAGCACCAGCATCTTCAGGAGCTAGCAACTCCACACGCCAGAAAT CAGGAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAGCATTTAGTGGGAAGAGCTACTCCTTGAAACGTTAGCT GGATTTTGTAGCCTTAACTTTTGGAATGAGCCATCCTAATTCACTTGGTGAATGTGTGGGGCCGTCTGGCTACTCTAGCGTAGACAAATGCGTATATTCACTTTTCATACTATGAAACACTAGCATGTATATCCAAATTAAACTATATAAATGCTTTAGCGTGATGGAAATATTGC                                            ]
[+] EMBL AU183910             [            GACGTNTCCTCGGCGAGTTCGCCCGCCGCCTCGCCTGCGTCGATCTCCATCGCCGCCGGCGTCTGCTGCTTCCGCCGCATCCTCGCTCGCTGGTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGTTTTATGCAGGATATGGNTACCATGGGAGTAACTTTGAGCAAACATACCGTTGTTATCCAGCATCTTTCTTTGACAAGCCACACCTGGAAGGTGGCGACAAAGTAATTATGCCACCATCTGCTCTTGATCGGCTTGCTTCTCTGCACATTGAATATCCTATGCTGTTTGAGTTGCATAATGATGCAACTCAGCGGATTTCACACTGTGGTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGATGATGCAAAACATGCTTCTTCAAGAGGGTGACACTGTCCGTGTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL C98800               [                                                                                                                                                                                                                                                                                                                   TATGCTGTTTGAGTTGCATAATGATGCAACTCAGCGGATTTCACACTGTGGTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGATGATGCAAAACATGCTTCTTCAAGAGGGTGACACTGTCCGTGTAAAAAATACAACCCTTCCCAAGGGTACATATGTCAAGTTGCAGCCTCACACAACTGACTTTTTGGACATCTCAAATCCGAAGGCCATCCTGGAGAAAACACTAAGAAACTTCTCTTGTTTAACCACCGGCGATAGTATCATGGTAGCTTACAACAACAAACAATACTACATTGACATTGTTGAAACAAAACCTGCTTCCGCAGTTAGNNATAATTGAGACGGNCTGTGAAGTGGACTTTGCACCNCCCCTTGATTACCAAGAACCTGGAAATCCGGGGNAACCATCAG TCCCGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSR07381A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTTTTTGGACATCTCAAATCCGAA GCCATCCTGGAGAAAACACTAAGAAACTTCTCTTGTTTAACCACCGGCGATAGTATCATGGTAGCTTACAACAACAAACAATACTACATTGACATTGTTGAAACAAAACCTGCTTCCGCAGTTAG TATTATTGAGACGGACTGTGAAGTGGACTTTGCACCTCCTCTTGATTACAAAGAACCTGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTNAGGCAACTGCTGAAGATGAAAATGCTAAAGTTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTTCTGGAAAGC GGCTGGATGGTAAAGCCTCAAAGCTACAAGCAACAGAGGTCCCTTCTGCCTCACGTTCTTCCCCTTCAGGCTNAAACCAAAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSR07541A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTTTTTGGACATCTCAAATCCGAA GCCATCCTGGAGAAAACACTAAGAAACTTCTCTTGTTTAACCACCGGCGATAGTATCATGGTAGCTTACAACAACAAACAATACTACATTGACATTGTTGAAACAAAACCTGCTTCCGCAGTTAG TATTATTGAGACGGACTGTGAAGTGGACTTTGCACCTCCTCTTGATTACAAAGAACCTGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGATGAAAATGCTAAAGTTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTTCTGGAAAGC GGCTGGATGGTAAAGCCTCAAAGCTACAAGCAACAGAGGTCCCTTCTGCCTCA GTTCTTCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU164616             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAAAGACCCTGAAAATCNGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGATGAAAATGCTAAAGTTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTTCTGGAAAGCGGGCTGGATGGTAAAGCCTCAAAGCTACAAGCAACAGAGGTCCCTTCTGCCTCACGTTCTTCCCCTTCAGACTCAAA CAAAAGGGTGAATCAGGAAACGTTAGCACCAGCATCTTCAGGAGCTAGCAACTCCACACGCCAGAAAT CAGGAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAGCATTTAGTGGGAAGAGCTACTCCTTGAAACGTTAGCT GGATTTTGTAGCCTTAACTTTTGGAATGAGCCATCCTAATTCACTTGGTGAATGTGTGGGGCCGTCTGGCTACTCTAGCGTAGACAAATGCGTATATTCACTTTTCATACTATGAAACACTAGCATGTATATCCAAATTAAACTATATAAATGCTTTAGCGTGATGGAAATATTGCATTTACAGTTATATTTATTTACCCGCGGCTAAAAAAAAAAAAAA]
[+] EMBL AU031714             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGGAAACGTTAGCACCAGCATCTTCAGGAGCTAGCAACTCCACACGCCAGAAATNCAGGAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGANCCGCAAAAGGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAGCATTTAGTGGGAAGAGCTACTCCTTGAAACGTTAGCTGGGATTTTGTANCCTTAACTTTTGGAATGAGCCATCCTAATTCACTTGGTGAATGTGTGGGGCCGTCTGGCTACTCTAGCGTAGACAAATGCGTATATTCACTTTTCATACTATGAAACACTAGCATGTATATCCAAATTAAACTATATAAATGCTTTAGCGTGATGGAAATATTGCATTTACAGTTATATTTATTTACCCGCGGCTAAAAAANAACAA  ]
[+] EMBL C98801               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 gggtTAGC ACTCCACACGCCAG AAT CAGG AAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAAAGGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAGCATTTAGTGGGAAGAGCTACTCCTTGAAACGTTAGCT GGATTTTGTAGCCTTAACTTTTGGAATGAGCCATCCTAATTCACTTGGTGAATGTGTGGGGCCGTCTGGCTACTCTAGCGTAGACAAATGCGTATATTCACTTTTCATACTATGAAACACTAGCATGTATATCCAAATTAAACTATATAAATGCTTTAGCGTGATGGAAATATTGCATTTACAGTTATATTTATTTAaaa                    ]


>consensus_12271#0 CCTCGACTCCCGGACGTCTCCTCGGCGAGTTCGCCCGCCGCCTCGCCTGCGTCGATCTCC ATCGCCGCCGGCGTCTGCTGCTTCCGCCGCATCCTCGCTCGCTGGTTACGAGCCTGGGAG AAGTTGAGGCAAAGACCTGCAGCAAAATGTTTTATGCAGGATATGGCTACCATGGGAGTA ACTTTGAGCAAACATACCGTTGTTATCCAGCATCTTTCTTTGACAAGCCACACCTGGAAG GTGGCGACAAAGTAATTATGCCACCATCTGCTCTTGATCGGCTTGCTTCTCTGCACATTG AATATCCTATGCTGTTTGAGTTGCATAATGATGCAACTCAGCGGATTTCACACTGTGGTG TGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGATGATGCAAAACA TGCTTCTTCAAGAGGGTGACACTGTCCGTGTAAAAAATACAACCCTTCCCAAGGGTACAT ATGTCAAGTTGCAGCCTCACACAACTGACTTTTTGGACATCTCAAATCCGAAGGCCATCC TGGAGAAAACACTAAGAAACTTCTCTTGTTTAACCACCGGCGATAGTATCATGGTAGCTT ACAACAACAAACAATACTACATTGACATTGTTGAAACAAAACCTGCTTCCGCAGTTAGTA TTATTGAGACGGACTGTGAAGTGGACTTTGCACCTCCTCTTGATTACAAAGAACCTGAAA ATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGATGAAAATGCTAAAG TTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTTCTGGAAAGCGGCTGGATGGTAAAG CCTCAAAGCTACAAGCAACAGAGGTCCCTTCTGCCTCACGTTCTTCCCCTTCAGACTCAA ACAAAAGGGTGAATCAGGAAACGTTAGCACCAGCATCTTCAGGAGCTAGCAACTCCACAC GCCAGAAATCAGGAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAA AGGCTTCCGTTAAGGATGATGAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAGCATTTA GTGGGAAGAGCTACTCCTTGAAACGTTAGCTGGATTTTGTAGCCTTAACTTTTGGAATGA GCCATCCTAATTCACTTGGTGAATGTGTGGGGCCGTCTGGCTACTCTAGCGTAGACAAAT GCGTATATTCACTTTTCATACTATGAAACACTAGCATGTATATCCAAATTAAACTATATA AATGCTTTAGCGTGATGGAAATATTGCATTTACAGTTATATTTATTTACCCGCGGCTAAA AAAAAAAAAAA



consensusID : consensus_12271#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1089
fasta sequence
                              [GAGTTCGCCCGCCGCCTCGCCTGCGTCGATCTCCATCGCCGCCGGCGTCTGCTGCTTCCGCCGCATCCTCGCTCGCTGGTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTTGTTATCCAGCATCTTTCTTTGACAAGCCACACCTGGAAGGTGGCGACAAAGTAATTATGCCACCATCTGCTCTTGATCGGCTTGCTTCTCTGCACATTGAATATCCTATGCTGTTTGAGTTGCATAATGATGCAACTCAGCGGATTTCACACTGTGGTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGATGATGCAAAACATGCTTCTTCAAGAGGGTGACACTGTCCGTGTAAAAAATACAACCCCTCCCAAGGGTACATATGTCAAGTTGCAGCCTCACACAACTGACTTTTTGGACATCTCAAATCCGAGGGCCATCCTGGAGAAAACACTAAGAAACTTCTCTTGTTTAACCACCGGCGATAGTATCATGGTAGCTTACAACAACAAACAATACTACATTGACATTGTTGAAACAAAACCTGCTTCCGCAGTTAGTATTATTGAGACGGACTGTGAAGTGGACTTTGCACCTCCTCTTGATTACAAAGAACCTGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGGTTTGTCTTTAGATTAAGTGCACTTTAGTTTTCAGATGAACTTGTATTGAAAGGCTGAATTTTATCCTCCTCTTCTATAGCAATTTTTCAAGTGTGCTGCCATCTGGGAGCATGTACTCCACACCCTGAACTAGTATTTTCATCTACTCCCATAGTCCTGTATTTTGCATAGTAAACTGCAACATAAGTTAAACAAAGAACAATAGAAGGAAAACTAGAACTGGAAGACATGCTTGAATCAAAGACGTCAAGCACTCTGTCCAGTGGTGTGAAGTGGCACTGTTCTGGATTGCTTGGTTTTGGGGTTGACAGCCTTTCTGTCAACTTCTTGTATGCTACTAGTTTGTTTA]

[+] EMBL AK119957             [GAGTTCGCCCGCCGCCTCGCCTGCGTCGATCTCCATCGCCGCCGGCGTCTGCTGCTTCCGCCGCATCCTCGCTCGCTGGTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTTGTTATCCAGCATCTTTCTTTGACAAGCCACACCTGGAAGGTGGCGACAAAGTAATTATGCCACCATCTGCTCTTGATCGGCTTGCTTCTCTGCACATTGAATATCCTATGCTGTTTGAGTTGCATAATGATGCAACTCAGCGGATTTCACACTGTGGTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGATGATGCAAAACATGCTTCTTCAAGAGGGTGACACTGTCCGTGTAAAAAATACAACCCCTCCCAAGGGTACATATGTCAAGTTGCAGCCTCACACAACTGACTTTTTGGACATCTCAAATCCGAGGGCCATCCTGGAGAAAACACTAAGAAACTTCTCTTGTTTAACCACCGGCGATAGTATCATGGTAGCTTACAACAACAAACAATACTACATTGACATTGTTGAAACAAAACCTGCTTCCGCAGTTAGTATTATTGAGACGGACTGTGAAGTGGACTTTGCACCTCCTCTTGATTACAAAGAACCTGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGGTTTGTCTTTAGATTAAGTGCACTTTAGTTTTCAGATGAACTTGTATTGAAAGGCTGAATTTTATCCTCCTCTTCTATAGCAATTTTTCAAGTGTGCTGCCATCTGGGAGCATGTACTCCACACCCTGAACTAGTATTTTCATCTACTCCCATAGTCCTGTATTTTGCATAGTAAACTGCAACATAAGTTAAACAAAGAACAATAGAAGGAAAACTAGAACTGGAAGACATGCTTGAATCAAAGACGTCAAGCACTCTGTCCAGTGGTGTGAAGTGGCACTGTTCTGGATTGCTTGGTTTTGGGGTTGACAGCCTTTCTGTCAACTTCTTGTATGCTACTAGTTTGTTTA]


>consensus_12271#1 GAGTTCGCCCGCCGCCTCGCCTGCGTCGATCTCCATCGCCGCCGGCGTCTGCTGCTTCCG CCGCATCCTCGCTCGCTGGTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAA ATGTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTTGTTAT CCAGCATCTTTCTTTGACAAGCCACACCTGGAAGGTGGCGACAAAGTAATTATGCCACCA TCTGCTCTTGATCGGCTTGCTTCTCTGCACATTGAATATCCTATGCTGTTTGAGTTGCAT AATGATGCAACTCAGCGGATTTCACACTGTGGTGTGCTGGAATTTGTGGCAGAAGAAGGC ATGATCATCATGCCCTACTGGATGATGCAAAACATGCTTCTTCAAGAGGGTGACACTGTC CGTGTAAAAAATACAACCCCTCCCAAGGGTACATATGTCAAGTTGCAGCCTCACACAACT GACTTTTTGGACATCTCAAATCCGAGGGCCATCCTGGAGAAAACACTAAGAAACTTCTCT TGTTTAACCACCGGCGATAGTATCATGGTAGCTTACAACAACAAACAATACTACATTGAC ATTGTTGAAACAAAACCTGCTTCCGCAGTTAGTATTATTGAGACGGACTGTGAAGTGGAC TTTGCACCTCCTCTTGATTACAAAGAACCTGAAAATCCGCAGCAACCATCAGTTCCTGCA AGTGAGGCAACTGCTGAAGGTTTGTCTTTAGATTAAGTGCACTTTAGTTTTCAGATGAAC TTGTATTGAAAGGCTGAATTTTATCCTCCTCTTCTATAGCAATTTTTCAAGTGTGCTGCC ATCTGGGAGCATGTACTCCACACCCTGAACTAGTATTTTCATCTACTCCCATAGTCCTGT ATTTTGCATAGTAAACTGCAACATAAGTTAAACAAAGAACAATAGAAGGAAAACTAGAAC TGGAAGACATGCTTGAATCAAAGACGTCAAGCACTCTGTCCAGTGGTGTGAAGTGGCACT GTTCTGGATTGCTTGGTTTTGGGGTTGACAGCCTTTCTGTCAACTTCTTGTATGCTACTA GTTTGTTTA



consensusID : consensus_12271#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 646
fasta sequence
                              [GGCGAGTTCGCCCGCCGCCTCGCCTGCGTCGATCTCCATCGCCGCCGGCGTCTGCTGCTTCCGCCGCATCCTCGCTCGCTGGTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGTTTTATGCAGGATATGGCTACCATGGGAGTAACTATGAGCAAACATACCGTTGTAATCCAGCATCTTTCTTTGACAAGCCACACCTGGAAGGTGGCGACAAAGTACTCATGCCACCATCTGCTCTTGATCGGCTTGCTTCTCTGCACATCGAATATCCTATGCTGTTTGAGTTGCATAATGATGCTACTCAGCGGATTTCACACTGTGGTGTGCTGGAATTTGTGGCACAAGAAGGCATGATCATCATGCCCTACTGGATGATGCAAAACGTGCTCCTTCAAGAGGGTCACACTGTCCGTGTAAACATACGACCCTGCCCAACGGTACCTCTGTCAAGTCGCACCCTCACACAACCTAACTTTTGGACTTCTCACATCCGAAGGCCCTCCTGGAGACACCCTAAGAAACTTCTCTTGTCTACCCCCGGCGACTAGTTCATGGTACTTTCATCACCAACCCTTCGGCGGTGACATTTTTCAACAAACCTGCTTCCCCAATTTATTTTATTGAACGACTGTA]

[+] EMBL CA753538             [GGCGAGTTCGCCCGCCGCCTCGCCTGCGTCGATCTCCATCGCCGCCGGCGTCTGCTGCTTCCGCCGCATCCTCGCTCGCTGGTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGTTTTATGCAGGATATGGCTACCATGGGAGTAACTATGAGCAAACATACCGTTGTAATCCAGCATCTTTCTTTGACAAGCCACACCTGGAAGGTGGCGACAAAGTACTCATGCCACCATCTGCTCTTGATCGGCTTGCTTCTCTGCACATCGAATATCCTATGCTGTTTGAGTTGCATAATGATGCTACTCAGCGGATTTCACACTGTGGTGTGCTGGAATTTGTGGCACAAGAAGGCATGATCATCATGCCCTACTGGATGATGCAAAACGTGCTCCTTCAAGAGGGTCACACTGTCCGTGTAAACATACGACCCTGCCCAACGGTACCTCTGTCAAGTCGCACCCTCACACAACCTAACTTTTGGACTTCTCACATCCGAAGGCCCTCCTGGAGACACCCTAAGAAACTTCTCTTGTCTACCCCCGGCGACTAGTTCATGGTACTTTCATCACCAACCCTTCGGCGGTGACATTTTTCAACAAACCTGCTTCCCCAATTTATTTTATTGAACGACTGTA]


>consensus_12271#2 GGCGAGTTCGCCCGCCGCCTCGCCTGCGTCGATCTCCATCGCCGCCGGCGTCTGCTGCTT CCGCCGCATCCTCGCTCGCTGGTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGC AAAATGTTTTATGCAGGATATGGCTACCATGGGAGTAACTATGAGCAAACATACCGTTGT AATCCAGCATCTTTCTTTGACAAGCCACACCTGGAAGGTGGCGACAAAGTACTCATGCCA CCATCTGCTCTTGATCGGCTTGCTTCTCTGCACATCGAATATCCTATGCTGTTTGAGTTG CATAATGATGCTACTCAGCGGATTTCACACTGTGGTGTGCTGGAATTTGTGGCACAAGAA GGCATGATCATCATGCCCTACTGGATGATGCAAAACGTGCTCCTTCAAGAGGGTCACACT GTCCGTGTAAACATACGACCCTGCCCAACGGTACCTCTGTCAAGTCGCACCCTCACACAA CCTAACTTTTGGACTTCTCACATCCGAAGGCCCTCCTGGAGACACCCTAAGAAACTTCTC TTGTCTACCCCCGGCGACTAGTTCATGGTACTTTCATCACCAACCCTTCGGCGGTGACAT TTTTCAACAAACCTGCTTCCCCAATTTATTTTATTGAACGACTGTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12271#0      CCTCGACTCCCGGACGTCTCCTCGGCGAGTTCGCCCGCCGCCTCGCCTGCGTCGATCTCC 60
consensus_12271#2      -----------------------GGCGAGTTCGCCCGCCGCCTCGCCTGCGTCGATCTCC 37
consensus_12271#1      --------------------------GAGTTCGCCCGCCGCCTCGCCTGCGTCGATCTCC 34
                                                 **********************************

consensus_12271#0      ATCGCCGCCGGCGTCTGCTGCTTCCGCCGCATCCTCGCTCGCTGGTTACGAGCCTGGGAG 120
consensus_12271#2      ATCGCCGCCGGCGTCTGCTGCTTCCGCCGCATCCTCGCTCGCTGGTTACGAGCCTGGGAG 97
consensus_12271#1      ATCGCCGCCGGCGTCTGCTGCTTCCGCCGCATCCTCGCTCGCTGGTTACGAGCCTGGGAG 94
                       ************************************************************

consensus_12271#0      AAGTTGAGGCAAAGACCTGCAGCAAAATGTTTTATGCAGGATATGGCTACCATGGGAGTA 180
consensus_12271#2      AAGTTGAGGCAAAGACCTGCAGCAAAATGTTTTATGCAGGATATGGCTACCATGGGAGTA 157
consensus_12271#1      AAGTTGAGGCAAAGACCTGCAGCAAAATGTTTTATGCAGGATATGGCTACCATGGGAGTA 154
                       ************************************************************

consensus_12271#0      ACTTTGAGCAAACATACCGTTGTTATCCAGCATCTTTCTTTGACAAGCCACACCTGGAAG 240
consensus_12271#2      ACTATGAGCAAACATACCGTTGTAATCCAGCATCTTTCTTTGACAAGCCACACCTGGAAG 217
consensus_12271#1      ACTTTGAGCAAACATACCGTTGTTATCCAGCATCTTTCTTTGACAAGCCACACCTGGAAG 214
                       *** ******************* ************************************

consensus_12271#0      GTGGCGACAAAGTAATTATGCCACCATCTGCTCTTGATCGGCTTGCTTCTCTGCACATTG 300
consensus_12271#2      GTGGCGACAAAGTACTCATGCCACCATCTGCTCTTGATCGGCTTGCTTCTCTGCACATCG 277
consensus_12271#1      GTGGCGACAAAGTAATTATGCCACCATCTGCTCTTGATCGGCTTGCTTCTCTGCACATTG 274
                       ************** * ***************************************** *

consensus_12271#0      AATATCCTATGCTGTTTGAGTTGCATAATGATGCAACTCAGCGGATTTCACACTGTGGTG 360
consensus_12271#2      AATATCCTATGCTGTTTGAGTTGCATAATGATGCTACTCAGCGGATTTCACACTGTGGTG 337
consensus_12271#1      AATATCCTATGCTGTTTGAGTTGCATAATGATGCAACTCAGCGGATTTCACACTGTGGTG 334
                       ********************************** *************************

consensus_12271#0      TGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGATGATGCAAAACA 420
consensus_12271#2      TGCTGGAATTTGTGGCACAAGAAGGCATGATCATCATGCCCTACTGGATGATGCAAAACG 397
consensus_12271#1      TGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGATGATGCAAAACA 394
                       ***************** ***************************************** 

consensus_12271#0      TGCTTCTTCAAGAGGGTGACACTGTCCGTGTAAAAAATACAACCCTTCCCAAGGGTACAT 480
consensus_12271#2      TGCTCCTTCAAGAGGGTCACACTGTCCGTGTAAACA-TACGACCCTGCCCAACGGTACCT 456
consensus_12271#1      TGCTTCTTCAAGAGGGTGACACTGTCCGTGTAAAAAATACAACCCCTCCCAAGGGTACAT 454
                       **** ************ **************** * *** ****  ***** ***** *

consensus_12271#0      ATGTCAAGTTGCAGCCTCACACAACTGACTTTTTGGACATCTCAAATCCGAAGGCCATCC 540
consensus_12271#2      CTGTCAAGTCGCACCCTCACACAACCTAACTTTTGGACTTCTCACATCCGAAGGCCCTCC 516
consensus_12271#1      ATGTCAAGTTGCAGCCTCACACAACTGACTTTTTGGACATCTCAAATCCGAGGGCCATCC 514
                        ******** *** ***********  *  ******** ***** ****** **** ***

consensus_12271#0      TGGAGAAAACACTAAGAAACTTCTCTTGTTTAACCACCGGCGATAGTATCATGGTAGCTT 600
consensus_12271#2      TGGAGACA-CCCTAAGAAACTTCTCTTGTCTACCC-CCGGCGACTAGTTCATGGTA-CTT 573
consensus_12271#1      TGGAGAAAACACTAAGAAACTTCTCTTGTTTAACCACCGGCGATAGTATCATGGTAGCTT 574
                       ****** * * ****************** ** ** *******     ******** ***

consensus_12271#0      ACAACAACAAACAATACTACATTGACATTGTTGAAACAAAACCTGCTTCCGCAGTTAGTA 660
consensus_12271#2      TCATCACCAACCC-TTCGGCGGTGACATTTTTCAAC--AAACCTGCTTCCCCAATTTATT 630
consensus_12271#1      ACAACAACAAACAATACTACATTGACATTGTTGAAACAAAACCTGCTTCCGCAGTTAGTA 634
                        ** ** *** *  * *  *  ******* ** **   ************ ** **  * 

consensus_12271#0      TTATTGAGACGGACTGTGAAGTGGACTTTGCACCTCCTCTTGATTACAAAGAACCTGAAA 720
consensus_12271#2      TTATTGAA--CGACTGTA------------------------------------------ 646
consensus_12271#1      TTATTGAGACGGACTGTGAAGTGGACTTTGCACCTCCTCTTGATTACAAAGAACCTGAAA 694
                       *******    ******                                           

consensus_12271#0      ATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGATGAAAATGCTAAAG 780
consensus_12271#2      ------------------------------------------------------------
consensus_12271#1      ATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGGTTTG--TCTTTAGA 752
                                                                                   

consensus_12271#0      TTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTTCTGGAAAGCGGCTGGATGGTAAAG 840
consensus_12271#2      ------------------------------------------------------------
consensus_12271#1      TTAAGTGCACTTTAGTTTTCAGA---TGAACTTGTATTGAAA---GGCTGAAT--TTTAT 804
                                                                                   

consensus_12271#0      CCTCAAAGCTACAAGCAACAGAGGTCCCTTCTGCCTCACGTTCTTCCCCTTCAGACTCAA 900
consensus_12271#2      ------------------------------------------------------------
consensus_12271#1      CCTC---------------------CTCTTCTATAGCA-ATTTTTCAAGTGTGCTGCCAT 842
                                                                                   

consensus_12271#0      ACAAAAGGGTGAATCAGGAAACGTTAGCACCAGCATCTTCAGGAGCTAGCAACTCCACAC 960
consensus_12271#2      ------------------------------------------------------------
consensus_12271#1      CTGGGAGCATGTACTCCACACCCTGA--ACTAGTATTTTCATCTACT------CCCATAG 894
                                                                                   

consensus_12271#0      GCCAGAAATCAGGAAAGCTTGTTTTCGGTTCAAGTGCAAACAACAACAAAGAACCGCAAA 1020
consensus_12271#2      ------------------------------------------------------------
consensus_12271#1      TCCTGTATTTTGCATAG-TAAACTGCAACATAAGTTAAACAAAGAACAATAGAAGGAAAA 953
                                                                                   

consensus_12271#0      AGGCTTCCGTTAAGGATGAT-GAGTCTCCAAAGAAGGACGAGCCCAAGTTCCAAGCATTT 1079
consensus_12271#2      ------------------------------------------------------------
consensus_12271#1      CTAGAACTGGAAGACATGCTTGAATC----AAAGACGTCAAGCACTCTGTCCAG-----T 1004
                                                                                   

consensus_12271#0      AGTGGGAAGAGCTACTCCTTGAAACGTTAGCTGGATTTTGTAGCCTTAACTTTTGGAATG 1139
consensus_12271#2      ------------------------------------------------------------
consensus_12271#1      GGTGTGAAGTGGCACTGTTCTGGA---TTGCTTGGTTTTGGGGTTGACAGCCTTTCTGTC 1061
                                                                                   

consensus_12271#0      AGCCATCCTAATTCACTTGGTGAATGTGTGGGGCCGTCTGGCTACTCTAGCGTAGACAAA 1199
consensus_12271#2      ------------------------------------------------------------
consensus_12271#1      AACTTCTTGTATGCTACTAGTTTGTTTA-------------------------------- 1089
                                                                                   

consensus_12271#0      TGCGTATATTCACTTTTCATACTATGAAACACTAGCATGTATATCCAAATTAAACTATAT 1259
consensus_12271#2      ------------------------------------------------------------
consensus_12271#1      ------------------------------------------------------------
                                                                                   

consensus_12271#0      AAATGCTTTAGCGTGATGGAAATATTGCATTTACAGTTATATTTATTTACCCGCGGCTAA 1319
consensus_12271#2      ------------------------------------------------------------
consensus_12271#1      ------------------------------------------------------------
                                                                                   

consensus_12271#0      AAAAAAAAAAAA 1331
consensus_12271#2      ------------
consensus_12271#1      ------------
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)