Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12277 cluster # 12277       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12277#0 length = 1396 sequences # 8  
consensus_12277#1 length = 1140 sequences # 2  

consensusID : consensus_12277#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1396
fasta sequence
                              [AAGAACACACTCGAGCTGAGCACGTCTAGCTAGCTATATCTCTCAACATCTTCCGAGCTACTACTAGTAGCTAGCTAGCTAGAGGAAGCAGCAGCAATGGCGAAATCTTGCACCTTGGTACTACTACTTGTCGCACTGGTCGGGCTCTCACTTCTTGTGAGCCCCATTGCTTGCTCCCGCAAGCTCAGCAAGCCGAAACCCAAGCCGAAGCCGAGCATGAAGAAGCCGGTGGTCCGGGCTCACAACAACTACACCGGTAGCCCGTCGGTGACGGTCACCACCGGCTGGGCCGCCGCCGGCGCCACGTACTACGGCGCCCCCAACGGCGACGGCAGCGACGGCGGCGCTTGCGGCTACCAGACCGCCGTCGGGCAGCGGCCGTTCTCGTCGATGATCGCCGCCGGGAGCCCGTCGCTGTACAAGGGAGGCAAGGGGTGCGGCGCGTGCTATGAGGTTAAATGCACGACCAACGCAGCTTGCTCCGGCCAGCCAGCCACCGTCGTCATCACCGACGAGTGCCCCGGGGGCATCTGCCTCGCCGGCGCCGCGCACTTCGACATGAGCGGCACTTCCATGGGCGCCATGGCCAAGCCCGGCATGGCCGACAAGCTCCGCGCCGCCGGTATCCTCCAGGTCCAGTACAGAAGGGTGCCATGCAAGTACAGCGGCGTGAACATCGCGTTCAGGGTTGACCAGGGGGCAAACCCGTTCTACTTCGAGGTGCTCATCGAGTTCGAGGACGGCGACGGCGACCTCAACGCCGTCGACCTGATGGAGGCCGGCTGCGGCTGGACGCCGATGGTGCAGAACTGGGGCGCGCTCTGGCGGTACAACTCCAACACCGGCAAGGCCCTGAAGGCGCCATTCTCGCTCCGCCTCACCTCCGACTCCGGCAAGGTGCTCGTCGCAAACAACGTCATCCCGGCGAGCTGGAAGCCCGGCGTGACGTACCGCTCCCTGGTGAACTACTCCTAAATTAATTACAGCTCTCTCCACATCTCCTGCAAGAAGCTGCAGTGCAGAGTTGCGGTAAATTGGTAATTACAGATTTATAATTAGCCTCGGGTTAATTATATGGCGGGAAATGTGCGTCCGGGTGTTGCGAGAGGCGGTGTCAGAAGAGGAGGAAAGGAGGTTTAAGAATCGTGTTCTTCCCTCCACGGTCTCTGCATTCCCCTAGTGATGTGACTGTGTCGTCGTCGATTTGTCTGTAAAATTTTATTTTTCTTAGTTATATCTTCCTCTGTTATTGTCATGTTGAGGGAGAAGCTTGAGCTGCAACTAATGTTGC-ATGCCGATGTATCAAG-TTTGTGTGTGTGTGTTTTTTTTGTACCACGCAAATCTTTCAGATAAATGGATTAGTACTG-TCAGAAGATTTCTGTACTTCAAAAAAAAA]

[+] EMBL AK059638             [AAGAACACACTCGAGCTGAGCACGTCTAGCTAGCTATATCTCTCAACATCTTCCGAGCTACTACTAGTAGCTAGCTAGCTAGAGGAAGCAGCAGCAATGGCGAAATCTTGCACCTTGGTACTACTACTTGTCGCACTGGTCGGGCTCTCACTTCTTGTGAGCCCCATTGCTTGCTCCCGCAAGCTCAGCAAGCCGAAACCCAAGCCGAAGCCGAGCATGAAGAAGCCGGTGGTCCGGGCTCACAACAACTACACCGGTAGCCCGTCGGTGACGGTCACCACCGGCTGGGCCGCCGCCGGCGCCACGTACTACGGCGCCCCCAACGGCGACGGCAGCGACGGCGGCGCTTGCGGCTACCAGACCGCCGTCGGGCAGCGGCCGTTCTCGTCGATGATCGCCGCCGGGAGCCCGTCGCTGTACAAGGGAGGCAAGGGGTGCGGCGCGTGCTATGAGGTTAAATGCACGACCAACGCAGCTTGCTCCGGCCAGCCAGCCACCGTCGTCATCACCGACGAGTGCCCCGGGGGCATCTGCCTCGCCGGCGCCGCGCACTTCGACATGAGCGGCACTTCCATGGGCGCCATGGCCAAGCCCGGCATGGCCGACAAGCTCCGCGCCGCCGGTATCCTCCAGGTCCAGTACAGAAGGGTGCCATGCAAGTACAGCGGCGTGAACATCGCGTTCAGGGTTGACCAGGGGGCAAACCCGTTCTACTTCGAGGTGCTCATCGAGTTCGAGGACGGCGACGGCGACCTCAACGCCGTCGACCTGATGGAGGCCGGCTGCGGCTGGACGCCGATGGTGCAGAACTGGGGCGCGCTCTGGCGGTACAACTCCAACACCGGCAAGGCCCTGAAGGCGCCATTCTCGCTCCGCCTCACCTCCGACTCCGGCAAGGTGCTCGTCGCAAACAACGTCATCCCGGCGAGCTGGAAGCCCGGCGTGACGTACCGCTCCCTGGTGAACTACTCCTAAATTAATTACAGCTCTCTCCACATCTCCTGCAAGAAGCTGCAGTGCAGAGTTGCGGTAAATTGGTAATTACAGATTTATAATTAGCCTCGGGTTAATTGTATGGCGGGAAATGTGCGTCCGGGTGTTGCGAGAGGCGGTGTCAGAAGAGGAGGAAAGGAGGTTTAAGAATCGTGTTCTTCCCTCCACGGTCTCTGCATTCCCCTAGTGATGTGACTGTGTCGTCGTCGATTTGTCTGTAAAATTTTATTTTTCTTAGTTATATCTTCCTCTGTTATTGTCATGTTGAGGGAGAAGCTTAAGCTGCAACTAATGTTGC ATGCCGATGTATCAAG TTTGTGTGTGTGTGTTTTTTTTGTACCACGCAAATCTTTCAGATAAATGGAT                                      ]
[+] EMBL OSS3352A             [                  AGCACGTCTAGCTAGCTATATCTCTCAACATCTTCCGAGCTACTACTAGTAGCTAGCTAGCTAGAGGAAGCAGCAGCAATGGCGAAATCTTGCACCTTGGTACTACTACTTGTCGCACTGGTCGGGCTCTCACTTCTTGTGAGCCCCATTGCTTGCTCCCGCAAGCTCAGCAAGCCGAAACCCAAGCCGAAGCCGAGCATGAAGAAGCCGGTGGTCCGGGCTCACAACAACTACACCGGTAGCCCGTCGGTGACGNTCACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM038507             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGAAGGC CCATTCTCGCTCCGCCTCACCTCCGACTCCGGCAAGGTGCTTTTC CCAAC ACGTCATCCCGGCGAGCTGGAAGCCCGGCGTGACGTACCGCTCCCTGGTGAACTACTCCTAAATTAATTACAGCTCTCTCCACATCTCCTGCAAGAAGCT CAGTGCAGAGTTGCGGTAAATTGGTAATTACAGATTTATAATTAGCCTCGGGTTAATTATATGGCGGGAAATGTGCGTCCGGGTGTTGCGAGAGGCGGTGTCAGAAGAGGAGGAAAGGAGGTTTAAGAACCGTGTTCTTCCCTCCACGGTCTCTGCATTCCCCTAGTGATGTGACTGTGTCGTCGTCGATTTGTCTGTAAAATTTTATTTTTCTTAGTTATATCTTCCTCTGTTATTGTCATGTTGAGGGAGAAGCTTGAGCTGCAACTAATGTTGC ATGCCGATGTATCAAG TTTGTGTGTGTGTG TTTTTTTGTACCACGC AATCTTTCAGATAAATGGATTAGTACTGCTCAGAAGATTTCTGTA    AAAAAAAAA]
[+] EMBL AU101525             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CGCTCCGCCTCACCTCCGACTCCGGCAAGGTGCTCGTCGCAAACAACGTCATCCCGGCGAGCTGGAAGCCCGGCGTGACGTACCGCTCCCTGGTGAACTACTCCTAAATTAATTACAGCTCTCTCCACATCTCCTGCAAGAAGCTGCAGTGCAGAGTTGCGGTAAATTGGTAATTACAGATTTATAATTAGCCTCGGGTTAATTATATGGCGGGAAATGTGCGTCCGGGTGTTGCGAGAGGCGGTGTCAGAAGAGGAGGAAAGGAGGTTTAAGAATCGTGTTCTTCCCTCCACGGTCTCTGCATTCCCCTAGTGATGTGACTGTGTCGTCGTCGATTTGTCTGTAAAATTTTATTTTTCTTAGTTATATCTTCCTCTGTTATTGTCATGTTGAGGGAGAAGCTTGAGCTGCAACTAATGTTGC ATGCCGATGTATCAAG TTTG                                                                                      ]
[+] EMBL AU032185             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CGCAAACAACGTCATCCCGGCGAGCTGGAAGCCCGGCGTGACGTACCGCTCCCTGGTGAACTACTCCTAAATTAATTACAGCTCTCTCCACATCTCCTGCAAGAAGCTGCAGTGCAGAGTTGCGGTAAATTGGTAATTACAGATTTATAATTAGCCTCGGGTTAATTATATGGCGGGAAATGTGCGTCCGGGTGTTGCGAGAGGCGGTGTCAGAAGAGGAGGAAAGGAGGTTTAAGAATCGTGTTCTTCCCTCCACGGTCTCTGCATTCCCCTAGTGATGTGACTGTGTCGTCGTCGATTTGTCTGTAAAATTTTATTTTTCTTAGTTATATCTTCCTCTGTTATTGTCATGTTGAGGGAGAAGCTTGAGCTGCAACTAATGTTGCAATGCCGATGTATCAAGTTTTGTGTGTGTGTGGTTTTTTTGTACCACGNAAATC                                                      ]
[+] EMBL AU032186             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCAAACAACGTCATCCCGGCGAGCTGGAAGCCCGGCGTGACGTACCGCTCCCTGGTGAACTACTCCTAAATTAATTACAGCTCTCTCCACATCTCCTGCAAGAAGCTGCAGTGCAGAGTTGCGGTAAATTGGTAATTACAGATTTATAATTAGCCTCGGGTTAATTATATGGCGGGAAATGTGCGTCCGGGTGTTGCGAGAGGCGGTGTCAGAAGAGGAGGAAAGGAGGTTTAAGAATCGTGTTCTTCCCTCCACGGTCTCTGCATTCCCCTAGTGATGTGACTGTGTCGTCGTCGATTTGTCTGTAAAATTTTATTTTTCTTAGTTATATCTTCCTCTGTTATTGTCATGTTGAGGGAGAAGCTTGAGCTGCAACTAATGTTGC ATGCCGATGTATCAAG TTTGTGTGTGTGTGTTTTTTTTGTACCACGCAAATCTTTCAGATAAATGGATTAGTACTG TCAGAAGATTTCTGTACTTCAAAAAAAAA]
[+] EMBL AY046927             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAAACAACGTCATCCCGGCGAGCTGGAAGCCCGGCGTGACGTACCGCTCCCTGGTGAACTACTCCTAAATTAATTACAGCTCTCTCCACATCTCCTGCAAGAAGCTGCAGTGCAGAGTTGCGGTAAATTGGTAATTACAGATTTATAATTAGCCTCGGGTTAATTATATGGCGGGAAATGTGCGTCCGGGTGTTGCGAGAGGCGGTGTCAGAAGAGGAGGAAAGGAGGTTTAAGAATCGTGTTCTTCCCTCCACGGTCTCTGCATTCCCCTAGTGATGTGACTGTGTCGTCGTCGATTTGTCTGTAAAATTTTATTTTTCTTAGTTATATCTTCCTCTGTTATTGTCATGTTGAGGGAGAAGCTTGAGCTGCAACTAATGTTGC ATGCCGATGTATCAAG TTTGTGTGTGTGTGTTTTTTTTGTACCACGCAAATCTTTCAGATAAATGGATTAGTACTG TCAGAAGATTTCTGTACTTCAAAAAAAAA]
[+] EMBL AU101526             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTGGTGAACTACTCCTAAATTAATTACAGCTCTCTCCACATCTCCTGCAAGAAGCTGCAGTGCAGAGTTGCGGTAAATTGGTAATTACAGATTTATAATTAGCCTCGGGTTAATTATATGGCGGGAAATGTGCGTCCGGGTGTTGCGAGAGGCGGTGTCAGAAGAGGAGGAAAGGAGGTTTAAGAATCGTGTTCTTCCCTCCACGGTCTCTGCATTCCCCTAGTGATGTGACTGTGTCGTCGTCGATTTGTCTGTAAAATTTTATTTTTCTTAGTTATATCTTCCTCTGTTATTGTCATGTTGAGGGAGAAGCTTGAGCTGCAACTAATGTTGC ATGCCGATGTATCAAG TTTGTGTGTGTGTGTTTTTTTTGTACCACGCAAATCTTTCAGATAAATGGATTAGTACTG TCAGAAGATTTCTGTACTTCAAAAA    ]


>consensus_12277#0 AAGAACACACTCGAGCTGAGCACGTCTAGCTAGCTATATCTCTCAACATCTTCCGAGCTA CTACTAGTAGCTAGCTAGCTAGAGGAAGCAGCAGCAATGGCGAAATCTTGCACCTTGGTA CTACTACTTGTCGCACTGGTCGGGCTCTCACTTCTTGTGAGCCCCATTGCTTGCTCCCGC AAGCTCAGCAAGCCGAAACCCAAGCCGAAGCCGAGCATGAAGAAGCCGGTGGTCCGGGCT CACAACAACTACACCGGTAGCCCGTCGGTGACGGTCACCACCGGCTGGGCCGCCGCCGGC GCCACGTACTACGGCGCCCCCAACGGCGACGGCAGCGACGGCGGCGCTTGCGGCTACCAG ACCGCCGTCGGGCAGCGGCCGTTCTCGTCGATGATCGCCGCCGGGAGCCCGTCGCTGTAC AAGGGAGGCAAGGGGTGCGGCGCGTGCTATGAGGTTAAATGCACGACCAACGCAGCTTGC TCCGGCCAGCCAGCCACCGTCGTCATCACCGACGAGTGCCCCGGGGGCATCTGCCTCGCC GGCGCCGCGCACTTCGACATGAGCGGCACTTCCATGGGCGCCATGGCCAAGCCCGGCATG GCCGACAAGCTCCGCGCCGCCGGTATCCTCCAGGTCCAGTACAGAAGGGTGCCATGCAAG TACAGCGGCGTGAACATCGCGTTCAGGGTTGACCAGGGGGCAAACCCGTTCTACTTCGAG GTGCTCATCGAGTTCGAGGACGGCGACGGCGACCTCAACGCCGTCGACCTGATGGAGGCC GGCTGCGGCTGGACGCCGATGGTGCAGAACTGGGGCGCGCTCTGGCGGTACAACTCCAAC ACCGGCAAGGCCCTGAAGGCGCCATTCTCGCTCCGCCTCACCTCCGACTCCGGCAAGGTG CTCGTCGCAAACAACGTCATCCCGGCGAGCTGGAAGCCCGGCGTGACGTACCGCTCCCTG GTGAACTACTCCTAAATTAATTACAGCTCTCTCCACATCTCCTGCAAGAAGCTGCAGTGC AGAGTTGCGGTAAATTGGTAATTACAGATTTATAATTAGCCTCGGGTTAATTATATGGCG GGAAATGTGCGTCCGGGTGTTGCGAGAGGCGGTGTCAGAAGAGGAGGAAAGGAGGTTTAA GAATCGTGTTCTTCCCTCCACGGTCTCTGCATTCCCCTAGTGATGTGACTGTGTCGTCGT CGATTTGTCTGTAAAATTTTATTTTTCTTAGTTATATCTTCCTCTGTTATTGTCATGTTG AGGGAGAAGCTTGAGCTGCAACTAATGTTGCATGCCGATGTATCAAGTTTGTGTGTGTGT GTTTTTTTTGTACCACGCAAATCTTTCAGATAAATGGATTAGTACTGTCAGAAGATTTCT GTACTTCAAAAAAAAA



consensusID : consensus_12277#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1140
fasta sequence
                              [TACCTAACCGATTGCCCAACAAGAAAATAGCAATGGTTAGCCGGGGCACTTTCGTTTTTGCCGTCCTAGTGGCGCTACCGATACTGTCACTCCCCGTCTCTGGCTACGAGCAGAACTACACTGCCGGCAGACGGAGCACCATGTCGCTGGGCAGAGGCTACGGCTGGTCCTCCGGCGGCGCGACGTGGTACGGCGGCCCGCAAGGNGACGGCAGCGAAGGTGGCGCGTGCGGTTACCAGAGCGCCGTCGGGCAGCGCCGTTTCTCGTCGATGATCGCCGCCGGGGGGCCCTCCCTCTTCAAGAATGGCAAAGGCTGCGGCTCATGCTACCAAATTAAGTGCANCGGCAACCGGGCGTTCTTCGGCCG-CCAGTGACCGTCGTGATCAACGACTTCTNCCCTTGAGGGGTATGCCTGAACGAGGCGGCGCACTTCGACATGAGCGGCACCGCCTTCGGCGCCATGGCCAACCGTGGCATGGGCGACCGCCTCCGCTCCGCCGGAGTCCTCAAGATCCAGTATAAGAGGGTGCCGTGCAGGTTTGCCATGAACGTGGCCTTCAAGGTGGACGCGGGCTCCAACCCGTACTACCTCGCCATCCTGGTCCAGTACGCGAACGGCGACGGCGACCTCGCCGCGGTGCACATCATGAAGGCCCGCGGCGGCGGCGGGTGGAAGGCGATGCAGCAGTCGTGGGGCGCCACCTGGCGCCTCAACTCCAACACCGGGAAGCCGCTGAGCCCGCCGTTCTCGATCCGGCTCACCTCGGGCTCCGGCAAGGTGCTCGTCGCCAACAACGTCATCCCCTCCGGGTGGCAGGCCGGGTTGACCTACCGATCCACCGTGAACTACGCCGCCTAATGCGGCGGCGTCGTGCGCGACTACGTACGCGCGTGTTTGTTAACGTCGCCGCGATAGATCCATCGCGAGGCAGAAGCTCGCCTCGTCGAAGTGAGTTCGGTGTGTGCGCGTCCGGGAATCGTGCGCAGCCGCGGTAAAAGAGGAGTTCGATCTGTTAGTGTTAAGTGTTCGTGATGTGTGTTCTCCCTCCGTGGCCGTTTGCAGAGCTGCTTCTAGTGACGTCTCTTGCTTGGTTATAACTTAACCGAATTCTGCGTTGCGATTTGCACTAAAAAAAAAAA]

[+] EMBL OSR28721A            [TACCTAACCGATTGCCCAACAAGAAAATAGCAATGGTTAGCCGGGGCACTTTCGTTTTTGCCGTCCTAGTGGCGCTACCGATACTGTCACTCCCCGTCTCTGGCTACGAGCAGAACTACACTGCCGGCAGACGGAGCACCATGTCGCTGGGCAGAGGCTACGGCTGGTCCTCCGGCGGCGCGACGTGGTACGGCGGCCCGCAAGGNGACGGCAGCGAAGGTGGCGCGTGCGGTTACCAGAGCGCCGTCGGGCAGCGCCGTTTCTCGTCGATGATCGCCGCCGGGGGGCCCTCCCTCTTCAAGAATGGCAAAGGCTGCGGCTCATGCTACCAAATTAAGTGCANCGGCAACCGGGCGTTCTTCGGCCG CCAGTGACCGTCGTGATCAACGACTTCTNCCCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AF261273             [  CCTAACCGATTGCCCAACAAGAAAATAGCAATGGTTAGCCGGGGCACTTTCGTTTTTGCCGTCCTAGTGGCGCTACCGATACTGTCACTCCCCGTCTCTGGCTACGAGCAGAACTACACTGCCGGCAGACGGAGCACCATGTCGCTGGGCAGAGGCTACGGCTGGTCCTCCGGCGGCGCGACGTGGTACGGCGGCCCGCAAGGCGACGGCAGCGAAGGCGGCGCGTGCGGTTACCAGAGCGCCGTCGGGCAGCGCCCGTTCTCGTCGATGATCGCCGCCGGCGGGCCCTCCCTCTTCAAGAATGGCAAAGGCTGCGGCTCATGCTACCAAATTAAGTGCACCGGCAACCGGGCGTGCTCCGGCCGCCCAGTGACCGTCGTGATCACCGACTCCTGCCCTGGAGGGGTATGCCTGAACGAGGCGGCGCACTTCGACATGAGCGGCACCGCCTTCGGCGCCATGGCCAACCGTGGCATGGGCGACCGCCTCCGCTCCGCCGGAGTCCTCAAGATCCAGTATAAGAGGGTGCCGTGCAGGTTTGCCATGAACGTGGCCTTCAAGGTGGACGCGGGCTCCAACCCGTACTACCTCGCCATCCTGGTCCAGTACGCGAACGGCGACGGCGACCTCGCCGCGGTGCACATCATGAAGGCCCGCGGCGGCGGCGGGTGGAAGGCGATGCAGCAGTCGTGGGGCGCCACCTGGCGCCTCAACTCCAACACCGGGAAGCCGCTGAGCCCGCCGTTCTCGATCCGGCTCACCTCGGGCTCCGGCAAGGTGCTCGTCGCCAACAACGTCATCCCCTCCGGGTGGCAGGCCGGGTTGACCTACCGATCCACCGTGAACTACGCCGCCTAATGCGGCGGCGTCGTGCGCGACTACGTACGCGCGTGTTTGTTAACGTCGCCGCGATAGATCCATCGCGAGGCAGAAGCTCGCCTCGTCGAAGTGAGTTCGGTGTGTGCGCGTCCGGGAATCGTGCGCAGCCGCGGTAAAAGAGGAGTTCGATCTGTTAGTGTTAAGTGTTCGTGATGTGTGTTCTCCCTCCGTGGCCGTTTGCAGAGCTGCTTCTAGTGACGTCTCTTGCTTGGTTATAACTTAACCGAATTCTGCGTTGCGATTTGCACTAAAAAAAAAAA]


>consensus_12277#1 TACCTAACCGATTGCCCAACAAGAAAATAGCAATGGTTAGCCGGGGCACTTTCGTTTTTG CCGTCCTAGTGGCGCTACCGATACTGTCACTCCCCGTCTCTGGCTACGAGCAGAACTACA CTGCCGGCAGACGGAGCACCATGTCGCTGGGCAGAGGCTACGGCTGGTCCTCCGGCGGCG CGACGTGGTACGGCGGCCCGCAAGGNGACGGCAGCGAAGGTGGCGCGTGCGGTTACCAGA GCGCCGTCGGGCAGCGCCGTTTCTCGTCGATGATCGCCGCCGGGGGGCCCTCCCTCTTCA AGAATGGCAAAGGCTGCGGCTCATGCTACCAAATTAAGTGCANCGGCAACCGGGCGTTCT TCGGCCGCCAGTGACCGTCGTGATCAACGACTTCTNCCCTTGAGGGGTATGCCTGAACGA GGCGGCGCACTTCGACATGAGCGGCACCGCCTTCGGCGCCATGGCCAACCGTGGCATGGG CGACCGCCTCCGCTCCGCCGGAGTCCTCAAGATCCAGTATAAGAGGGTGCCGTGCAGGTT TGCCATGAACGTGGCCTTCAAGGTGGACGCGGGCTCCAACCCGTACTACCTCGCCATCCT GGTCCAGTACGCGAACGGCGACGGCGACCTCGCCGCGGTGCACATCATGAAGGCCCGCGG CGGCGGCGGGTGGAAGGCGATGCAGCAGTCGTGGGGCGCCACCTGGCGCCTCAACTCCAA CACCGGGAAGCCGCTGAGCCCGCCGTTCTCGATCCGGCTCACCTCGGGCTCCGGCAAGGT GCTCGTCGCCAACAACGTCATCCCCTCCGGGTGGCAGGCCGGGTTGACCTACCGATCCAC CGTGAACTACGCCGCCTAATGCGGCGGCGTCGTGCGCGACTACGTACGCGCGTGTTTGTT AACGTCGCCGCGATAGATCCATCGCGAGGCAGAAGCTCGCCTCGTCGAAGTGAGTTCGGT GTGTGCGCGTCCGGGAATCGTGCGCAGCCGCGGTAAAAGAGGAGTTCGATCTGTTAGTGT TAAGTGTTCGTGATGTGTGTTCTCCCTCCGTGGCCGTTTGCAGAGCTGCTTCTAGTGACG TCTCTTGCTTGGTTATAACTTAACCGAATTCTGCGTTGCGATTTGCACTAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12277#0      AAGAACACACTCGAGCTGAGCACGTCTAGCTAGCTATATCTCTCAACATCTTCCGAGCTA 60
consensus_12277#1      ------------------------------------------------------------
                                                                                   

consensus_12277#0      CTACTAGTAGCTAGCTAGCTAGAGGAAGCAGCAGCAATGGCGAAATCTTGCACCTTGGTA 120
consensus_12277#1      -TACC--TAACCGATTGCCCA-ACAAGAAAATAGCAATGGTTAGCCGGGGCACTTTCGTT 56
                        ***   ** *    *  * * *  *   *  ********  *      **** ** ** 

consensus_12277#0      CTACTACTTGTCGCACTGGTCGGGCTCTCACTTCTTGTGAGCCCCATTGCTTGCTCCCGC 180
consensus_12277#1      TT------TGCCGTCCTAGTGGCGCTACCGATACTGTCACTCCCCGTCTCTGGCT----- 105
                        *      ** **  ** ** * ***  *  * **      **** *  ** ***     

consensus_12277#0      AAGCTCAGCAAGCCGAAACCCAAGCCGAAGCCGAGCATGAAGAAGCCGGTGGTCCGGGCT 240
consensus_12277#1      -------ACGAGCAGAA--CTACACTG------------------CCGGCAGACGGAGC- 137
                               * *** ***  * *  * *                  ****  * * * ** 

consensus_12277#0      CACAACAACTACACCGGTAGCCCGTCGGTGACGGTCACCACCGGCTGGGCCGCCGCCGGC 300
consensus_12277#1      -------ACCATGTCGCTGG-------GCAGAGGCTAC----GGCTGGTCCTCCGGCGGC 179
                              ** *   ** * *       *    **  **    ****** ** *** ****

consensus_12277#0      GCCACGTACTACGGCGCCCCCAACGGCGACGGCAGCGACGGCGGCGCTTGCGGCTACCAG 360
consensus_12277#1      GCGACGTGGTACGGCGGCCCGCAAGGNGACGGCAGCGAAGGTGGCGCGTGCGGTTACCAG 239
                       ** ****  ******* ***  * ** *********** ** ***** ***** ******

consensus_12277#0      ACCGCCGTCGGGCAGCGGCCGTTCTCGTCGATGATCGCCGCCGGGAGCCCGTCGCTGTAC 420
consensus_12277#1      AGCGCCGTCGGGCAGCGCCGTTTCTCGTCGATGATCGCCGCCGGGGGGCCCTCCCTCTTC 299
                       * *************** *  ************************ * ** ** ** * *

consensus_12277#0      AAGGGAGGCAAGGGGTGCGGCGCGTGCTATGAGGTTAAATGCACGACCAACGCAGCTTGC 480
consensus_12277#1      AAGAATGGCAAAGGCTGCGGCTCATGCTACCAAATTAAGTGCANCGGCAACCGGGCGTTC 359
                       ***   ***** ** ****** * *****  *  **** ****    ****   ** * *

consensus_12277#0      TCCGGCCAGCCAGCCACCGTCGTCATCACCGACGAGTGCCCCGGGGGCATCTGCCTCGCC 540
consensus_12277#1      TTCGGCC-GCCAGTGACCGTCGTGATCAACGACTTCTNCCCTTGAGGGGTATGCCTGAAC 418
                       * ***** *****  ******** **** ****   * ***  * **  * *****   *

consensus_12277#0      GGCGCCGCGCACTTCGACATGAGCGGCACTTCCATGGGCGCCATGGCCAAGCCCGGCATG 600
consensus_12277#1      GAGGCGGCGCACTTCGACATGAGCGGCACCGCCTTCGGCGCCATGGCCAACCGTGGCATG 478
                       *  ** ***********************  ** * ************** *  ******

consensus_12277#0      GCCGACAAGCTCCGCGCCGCCGGTATCCTCCAGGTCCAGTACAGAAGGGTGCCATGCAAG 660
consensus_12277#1      GGCGACCGCCTCCGCTCCGCCGGAGTCCTCAAGATCCAGTATAAGAGGGTGCCGTGCAGG 538
                       * ****   ****** *******  ***** ** ******* *  ******** **** *

consensus_12277#0      TACAGCGGCGTGAACATCGCGTTCAGGGTTGACCAGGGGGCAAACCCGTTCTACTTCGAG 720
consensus_12277#1      TT---TGCCATGAACGTGGCCTTCAAGGTGGACGCGGGCTCCAACCCGTACTACCTCGCC 595
                       *     * * ***** * ** **** *** ***  ***  * ******* **** ***  

consensus_12277#0      GTGCTCATCGAGTTCGAGGACGGCGACGGCGACCTCAACGCCGTCGACCTGATGGAGGCC 780
consensus_12277#1      ATCCTGGTCCAGTACGCGAACGGCGACGGCGACCTCGCCGCGGTGCACATCATGAAGGCC 655
                        * **  ** *** ** * *****************  *** **  ** * *** *****

consensus_12277#0      GGCTGCGGC------TGGACGCCGATGGTGCAGAACTGGGGCGCGCTCTGGCGGTACAAC 834
consensus_12277#1      CGCGGCGGCGGCGGGTGGAAGGCGATGCAGCAGTCGTGGGGCGCCACCTGGCGCCTCAAC 715
                        ** *****      **** * *****  ****   ********   ******   ****

consensus_12277#0      TCCAACACCGGCAAGGCCCTGAAGGCGCCATTCTCGCTCCGCCTCACCTCCGACTCCGGC 894
consensus_12277#1      TCCAACACCGGGAAGCCGCTGAGCCCGCCGTTCTCGATCCGGCTCACCTCGGGCTCCGGC 775
                       *********** *** * ****   **** ****** **** ******** * *******

consensus_12277#0      AAGGTGCTCGTCGCAAACAACGTCATCCCGGCGAGCTGGAAGCCCGGCGTGACGTACCGC 954
consensus_12277#1      AAGGTGCTCGTCGCCAACAACGTCATCCCCTCCGGGTGGCAGGCCGGGTTGACCTACCGA 835
                       ************** **************  *  * *** ** ****  **** ***** 

consensus_12277#0      TCCCTGGTGAACTACTCCTAAATTAATTACAGCTCTCTCCACATCTCCTGCAAGAAGCTG 1014
consensus_12277#1      TCCACCGTGAACTACGCCGCCTAATGCGGCGGCGTCGTGCGCGACTAC-GTACGCGCGTG 894
                       ***   ********* **           * **    * * *  ** * * * *    **

consensus_12277#0      CAGTGCAGAGTTGCGGTAAATTGGTAATTACAGATTTATAATTAGCCTCGGGTTAATTAT 1074
consensus_12277#1      TTTGTTAACGTCGCCGCGATAGATCCATCGCGAGGCAGAAGCTCGCCTCGTCGAAGTGAG 954
                             *  ** ** *  *       **  *        *  * ******    * * * 

consensus_12277#0      ATGGCGGGAAATGTGCGTCCGGGTGTTGCGAGAGGCGGTGTCAGAAGAGGAGGAAAGGAG 1134
consensus_12277#1      TT--CGGTGTGTGCGCGTCCGGGAATCGTGCGCAGCCGCGGTAAAAGAGGAGTTCGATCT 1012
                        *  ***    ** *********  * * * *  ** * *  * ********        

consensus_12277#0      GTTTAAGAATCGTGTTCTTCCCTCCACGGTCTCTGCATTCCCCTAGTGATGTGACTGTGT 1194
consensus_12277#1      GTTAGTGTTAAGTGTTCGT--------GATGTGTGTTCTCCCTC-----CGTGGCCGT-- 1057
                       ***   *    ****** *        * * * **   ****        *** * **  

consensus_12277#0      CGTCGTCGATTTGTCTGTAAAATTTTATTTTTCTTAGTTATATCTTCCTCTGTTATTGTC 1254
consensus_12277#1      --TTGCAGAGCTGCTTCTAGTGACGTCTCTTGCTTGGTTATAACTTAACCGAATTCTGC- 1114
                         * *  **  **  * **      * * ** *** ****** ***   *   *  **  

consensus_12277#0      ATGTTGAGGGAGAAGCTTGAGCTGCAACTAATGTTGCATGCCGATGTATCAAGTTTGTGT 1314
consensus_12277#1      --GTTGCGATTTGCACTAAAAAAAAAAA-------------------------------- 1140
                         **** *       **  *     **                                 

consensus_12277#0      GTGTGTGTTTTTTTTGTACCACGCAAATCTTTCAGATAAATGGATTAGTACTGTCAGAAG 1374
consensus_12277#1      ------------------------------------------------------------
                                                                                   

consensus_12277#0      ATTTCTGTACTTCAAAAAAAAA 1396
consensus_12277#1      ----------------------
                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)