These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12296#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1284 fasta sequence [ACACCAACCGATTTCGCAGCGCCAGCCCACTGATTCCTCACCGAATTTTTTCATTTTTTTTCTCTCTTTCCATTCTCCCCGGCGATCGAGTAGCCGGCTTCTGCTCGCCGCCCGCGCGCCGGAGGGAGGCGAGGTCCAAAGCCGGCGAGGCGCCATGCACCACGACCCCAACCCCTTCGACGAGGGCGCCGACGATAACCCCTTCTCCAATGGAGGAGGTGGTGGAGCACGTCGTGGTGGTGGTGGCGGCGGTGGTGGTGGCGGTGGCGGAGGCAAGTCTCAGTTCTCGTTCGGGTTCGGCGGCCTCGGCGGCGGCAGCAAGGGCGGTGCCACTGTCGACATCCCCCTCGACAACATGAGCGATTCGAAGGGCAAGGGGAAGGAGCTGTTGCAATGGGAGGCAGATCTCAAGAGACGAGAGGCGGATATCAGGAGAAGGGAGGAAGCTCTCAAGAGTGCCGGGGTGCCCATGGAGGAGAAGAACTGGCCACCATTCTTCCCAATTATCCACCACGACATTGCCAACGAGATACCTGCCAATGCACAGAAGTTGCAGTACCTTGCATTTGCAAGCTGGCTTGGGATTGTACTTTGTCTCTTCTGGAATTTT-ATTGCTGTCATTGTCTGTTGGATCAGAGG-AGGAGATT-CCAAGCTCTTTTT-CCTGGCTACTATCTACGGTATGCTTGGAATGCCTCTGTCATACTTGATGTGGTATAGGCCTCTGTACCGCGCAATGAGAACTGATAGCGCATTCAGCTTTGGATGGTTTTTCCTTTGCTACATGCTTCACATTGCCTTCTGTGTATTTGCTGCCATCGCT-CCA-CCAGTTATATTTCGTGGAAAAT-CATTAA-CTGGTATATTGG-CTG-CAA-TTGA-CA-CCTTCT-CTGAT-CA-TG-CA-ATAGT-CGGGATCTTTTA-CTTTGTCGGATTTG-CCTTGTTTTG-CTTGGAGACA-CTTGTGAG-CATTTGGGTTCTTCAGAAAGTATACA-TGTATTT-CAGAGGG-CA-CA-AGTGAAGTGGG-CCGTGGAAGAAATATTACAAAAGCCCACCAAATACTATCTGATTGAGCTGCAGTTCTGTGCATACATATATGTACATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAGTGTTA-TTTTTTTTAACAGGAATACTATTTTATAGTGTTGTTTTCTGGGCTGATCGGTCTGTTGTGTTGAACCTCAATTCTTTACCTATACAAATTGCACTTTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK106197 [ACACCAACCGATTTCGCAGCGCCAGCCCACTGATTCCTCACCGAATTTTTTCATTTTTTTTCTCTCTTTCCATTCTCCCCGGCGATCGAGTAGCCGGCTTCTGCTCGCCGCCCGCGCGCCGGAGGGAGGCGAGGTCCAAAGCCGGCGAGGCGCCATGCACCACGACCCCAACCCCTTCGACGAGGGCGCCGACGATAACCCCTTCTCCAATGGAGGAGGTGGTGGAGCACGTCGTGGTGGTGGTGGCGGCGGTGGTGGTGGCGGTGGCGGAGGCAAGTCTCAGTTCTCGTTCGGGTTCGGCGGCCTCGGCGGCGGCAGCAAGGGCGGTGCCACTGTCGACATCCCCCTCGACAACATGAGCGATTCGAAGGGCAAGGGGAAGGAGCTGTTGCAATGGGAGGCAGATCTCAAGAGACGAGAGGCGGATATCAGGAGAAGGGAGGAAGCTCTCAAGAGTGCCGGGGTGCCCATGGAGGAGAAGAACTGGCCACCATTCTTCCCAATTATCCACCACGACATTGCCAACGAGATACCTGCCAATGCACAGAAGTTGCAGTACCTTGCATTTGCAAGCTGGCTTGGGATTGTACTTTGTCTCTTCTGGAATTTT ATTGCTGTCATTGTCTGTTGGATCAGAGG AGGAGATT CCAAGCTCTTTTT CCTGGCTACTATCTACGGTATGCTTGGAATGCCTCTGTCATACTTGATGTGGTATAGGCCTCTGTACCGCGCAATGAGAACTGATAGCGCATTCAGCTTTGGATGGTTTTTCCTTTGCTACATGCTTCACATTGCCTTCTGTGTATTTGCTGCCATCGCT CCA CCAGTTATATTTCGTGGAAAAT CATTAA CTGGTATATTGG CTG CAA TTGA CA CCTTCT CTGAT CA TG CA ATAGT CGGGATCTTTTA CTTTGTCGGATTTG CCTTGTTTTG CTTGGAGACA CTTGTGAG CATTTGGGTTCTTCAGAAAGTATACA TGTATTT CAGAGGG CA CA AGTGAAGTGGG CCGTGGAAGAAATATTACAAAAGCCCACCAAATACTATCTGATTGAGCTGCAGTTCTGTGCATACATATATGTACATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAGTGTTA TTTTTTTTAACAGGAATACTATTTTATAGTGTTGTTTTCTGGGCTGATCGGTCTGTTGTGTTGAACCTCAATTCTTTACCTATACAAATTG ] [+] EMBL AU173008 [ CAGCGCCAGCCCACTGATTCCTCACCGAATTTTTTCATTTTTTTTCTCTCTTTCCATTCTCCCCGGCGATCGAGTAGCCGGCTTCTGCTCGCCGCCCGCGCGCCGGAGGGAGGCGAGGTCCAAAGCCGGCGAGGCGCCATGCACCACGACCCCAACCCCTTCGACGAGGGCGCCGACGATAACCCCTTCTCCAATGGAGGAGGTGGTGGAGCACGTCGTGGTGGTGGTGGCGGCGGTGGTGGTGGCGGTGGCGGAGGCAAGTCTCAGTTCTCGTTCGGGTTCGGCGGCCTCGGCGGCGGCAGCAAGGGCGGTGCCACTGTCGACATCCCCCTCGACAACATGAGCGATTCGAAGGGCAAGGGGAAGGAGCTGTTGCAATGGGAGGCAGATCTCAAGAGACGAGAGGCGGATATCAGGAGAAGGGAGGAAGCTCTCAAGAGTGCCGGGGTGCCCATGGAGGAGAAGAACTGGCCACCATTCTTCCCAATTATCCACCACGACATTGCCAACGAGATACCTGCCAATGCACAGAAGTTGCAGTACCTTGCATTTGCAAGCTGGCTTGGGATTGTACTTTGTCTCTTC ] [+] EMBL AU161407 [ TCCCCGGCGATCGAGTAGCCGGCTTCTGCTCGCCGCCCGCGCGCCGGAGGGAGGCGAGGTCCAAAGCCGGCGAGGCGCCATGCACCACGACCCCAACCCCTTCGACGAGGGCGCCGACGATAACCCCTTCTCCAATGGAGGAGGTGGTGGAGCACGTCGTGGTGGTGGTGGCGGCGGTGGTGGTGGCGGTGGCGGAGGCAAGTCTCAGTTCTCGTTCGGGTTCGGCGGCCTCGGCGGCGGCAGCAAGGGCGGTGCCACTGTCGACATCCCCCTCGACAACATGAGCGATTCGAAGGGCAAGGGGAAGGAGCTGTTGCAATGGGAGGCAGATCTCAAGAGACGAGAGGCGGATATCAGGAGAAGGGAGGAAGCTCTCA ] [+] EMBL AU161408 [ CTTCTGNAATTTTAATTGCTGTCATTGTCTGTTGGTCCAGAGGAAGAAGATTCCCAAGCTCTTTTTCCCTGGCTACTATCTACGGTATGCTTGGAATGCNTCTGTCATACTTGATGTGGTATAGGCCTCTGTACCGCGCAATGAGAACTGATAGCGCATTCAGCTTTGGATGGTTTTTCCTTTGCTACATGCTTCACATTGCCTTCTGTGTATTTGCTGCCATCGCT CCA CCAGTTATATTTCGTGGAAAAT CATTAA CTGGTATATTGG CTG CAA TTGA CA CCTTCT CTGAT CA TG CA ATAGT CGGGATCTTTTA CTTTGTCGGATTTG CCTTGTTTTG CTTGGAGACA CTTGTGAG CATTTGGGTTCTTCAGAAAGTATACA TGTATTT CAGAGGG CA CA AGTGAAGTGGG CCGTGGAAGAAATATTACAAAAGCCCACCAAATACTATCTGATTGAGCTGCAGTTCTGTGCATACATATATGTACATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAGTGTTA TTTTTTTTAACAGGAATACTATTTTATAGTGTTGTTTTCTGGGCTGATCGGTCTGTTGTGTTGAACCTCAATTCTTTACCTATACAAATTGCACTTTGTTCAAAAAAAA ] [+] EMBL CA767255 [ ACTGATAGCGCATTCAGCTTTGGATGGTTTTTCCTTTGCTACATGCTTCACATTGCCTTCTGTGTATTTGCTGCCATCGCT CCA CCAGTTATATTTCGTGGAAAAT CATTAA CTGGTATATTGG CTG CAA TTGA CA CCTTCT CTGAT CA TG CA ATAGT CGGGATCTTTTA CTTTGTCGGATTTG CCTTGTTTTG CTTGGAGACA CTTGTGAG CATTTGGGTTCTTCAGAAAGTATACA TGTATTT CAGAGGG CA CA AGTGAAGTGGG CCGTGGAAGAAATATTACAAAAGCCCACCAAATACTGTCTGATTGAGCTGCAGTTCTGTGCATACATATATGTACATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAGTGTTATTTTTTTTTAACAGGAATACTATTTTATAGTGTTGTTTTCTGGGCTGATCGGTCTGTTGTGTTGAACCTCAATTCTTTACCTATACAAATTGCACTTTGT ] [+] EMBL AU173009 [ TCGCT CCA CCAGTTATATTTCGTGGAAAAT CATTAA CTGGTATATTGG CTG CAA TTGA CA CCTTCT CTGAT CA TG CA ATAGT CGGGATCTTTTA CTTTGTCGGATTTG CCTTGTTTTG CTTGGAGACA CTTGTGAG CATTTGGGTTCTTCAGAAAGTATACA TGTATTT CAGAGGG CA CA AGTGAAGTGGG CCGTGGAAGAAATATTACAAAAGCCCACCAAATACTATCTGATTGAGCTGCAGTTCTGTGCATACATATATGTACATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAGTGTTA TTTTTTTTAACAGGAATACTATTTTATAGTGTTGTTTTCTGGGCTGATCGGTCTGTTGTGTTGAACCTCAATTCTTTACCTATACAAATTGCACTTTGTTCAAAAA ] [+] EMBL BI795405 [ TCGCTCCCACCCAGTTATATTTCGTGGAAAATCCATTAACCTGGTATATTGGCCTGCCAATTTGACCACCCTTCTCCTGATCCACTGCCACATAGTCCGGGATCTTTTACCTTTGTCGGATTTGCCCTTGTTTTGCCTTGGAGACACCTTGTGAGCCATTTGGGTTCTTCAGAAAGTATACACTGTATTTCCAGAGGGCCACCACAGTGAAGTGGGCCCGTGGAAGAAATATTACCAAAGCCCACCAAATACTGTCTGATTGAGCTGCAGTTCTGTGCATACATATATGTACATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAGTGTTA TTTTTTTTAAC GGAATACTATTTTATAGTGTTGTTTTCTGGGCTGATCGGTCTGTTGTGTTGAACCTC ATTCTTTACCTATAC AATTGCA ] [-] EMBL OSC109491 [ CGGGGAAAATCCATTAA CTGGTATATTGG CTG CAA TTGA CA CCTTCT CTGAT CA TG CA ATAGT CGGGATCTTTTA CTTTGTCGGATTTG CCTTGTTTTG CTTGGAGACA CTTGTGAG CATTTGGGTTCTTCAGAAAGTATACA TGTATTT CAGAGGG CA CA AGTGAAGTGGG CCGTGGAAGAAATATTACAAAAGCCCACCAAATACTATCTGATTGAGCTGCAGTTCTGTGCATACATATATGTACATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAGTGTTA TTTTTTTTAAAAANTATACAAT ] [+] EMBL AU164774 [ TA CTTTGTCGGATTTG CCTTGTTTTG CTTGGAGACA CTTGTGAG CATTTGGGTTCTTCAGAAAGTATACA TGTATTT CAGAGGG CA CA AGTGAAGTGGG CCGTGGAAGAAATATTACAAAAGCCCACCAAATACTATCTGATTGAGCTGCAGTTCTGTGCATACATATATGTACATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAGTGTTA TTTTTTTTAACAGGAATACTATTTTATAGTGTTGTTTTCTGGGCTGATCGGTCTGTTGTGTTGAACCTCAATTCTTTACCTATACAAATTGCACTTTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12296#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [CCAACGAGATACCTGCCAATGCACAGAAGTTGCAGTACCTTGCATTTGCAAGCTGGCTTGGGATTGTACTTTGTCTCTTCTGGAATTTTATTGCTGTCATTGTCTGTTGGATCAGAGGAGGAGATTCCAAGCTCTTTTTCCTGGCTACTATCTACGGTATGCTTGGAATGCCTCTGTCATACTTGATGTGGTATAGGCCTCTGTACCGCGCAATGAGAACTGATAGCGCATTCAGCTTTGGATGGTTTTTCCTTTGCTACATGCTTCACATTGCCTTCTGTGTATTTGCTGCCATCGCTCCACCAGTTATATTTCGTNNNNNATCATTAACTGGTATATTGGCTGCAATTGANNNNNTCTCTGATCATGCAATAGTNNNGATCTTTTACTTTGNNNNANNNNNN] [+] EMBL CF197219 [CCAACGAGATACCTGCCAATGCACAGAAGTTGCAGTACCTTGCATTTGCAAGCTGGCTTGGGATTGTACTTTGTCTCTTCTGGAATTTTATTGCTGTCATTGTCTGTTGGATCAGAGGAGGAGATTCCAAGCTCTTTTTCCTGGCTACTATCTACGGTATGCTTGGAATGCCTCTGTCATACTTGATGTGGTATAGGCCTCTGTACCGCGCAATGAGAACTGATAGCGCATTCAGCTTTGGATGGTTTTTCCTTTGCTACATGCTTCACATTGCCTTCTGTGTATTTGCTGCCATCGCTCCACCAGTTATATTTCGTNNNNNATCATTAACTGGTATATTGGCTGCAATTGANNNNNTCTCTGATCATGCAATAGTNNNGATCTTTTACTTTGNNNNANNNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12296#0 ACACCAACCGATTTCGCAGCGCCAGCCCACTGATTCCTCACCGAATTTTTTCATTTTTTT 60 consensus_12296#1 ------------------------------------------------------------ consensus_12296#0 TCTCTCTTTCCATTCTCCCCGGCGATCGAGTAGCCGGCTTCTGCTCGCCGCCCGCGCGCC 120 consensus_12296#1 ------------------------------------------------------------ consensus_12296#0 GGAGGGAGGCGAGGTCCAAAGCCGGCGAGGCGCCATGCACCACGACCCCAACCCCTTCGA 180 consensus_12296#1 ------------------------------------------------------------ consensus_12296#0 CGAGGGCGCCGACGATAACCCCTTCTCCAATGGAGGAGGTGGTGGAGCACGTCGTGGTGG 240 consensus_12296#1 ------------------------------------------------------------ consensus_12296#0 TGGTGGCGGCGGTGGTGGTGGCGGTGGCGGAGGCAAGTCTCAGTTCTCGTTCGGGTTCGG 300 consensus_12296#1 ------------------------------------------------------------ consensus_12296#0 CGGCCTCGGCGGCGGCAGCAAGGGCGGTGCCACTGTCGACATCCCCCTCGACAACATGAG 360 consensus_12296#1 ------------------------------------------------------------ consensus_12296#0 CGATTCGAAGGGCAAGGGGAAGGAGCTGTTGCAATGGGAGGCAGATCTCAAGAGACGAGA 420 consensus_12296#1 ------------------------------------------------------------ consensus_12296#0 GGCGGATATCAGGAGAAGGGAGGAAGCTCTCAAGAGTGCCGGGGTGCCCATGGAGGAGAA 480 consensus_12296#1 ------------------------------------------------------------ consensus_12296#0 GAACTGGCCACCATTCTTCCCAATTATCCACCACGACATTGCCAACGAGATACCTGCCAA 540 consensus_12296#1 -----------------------------------------CCAACGAGATACCTGCCAA 19 ******************* consensus_12296#0 TGCACAGAAGTTGCAGTACCTTGCATTTGCAAGCTGGCTTGGGATTGTACTTTGTCTCTT 600 consensus_12296#1 TGCACAGAAGTTGCAGTACCTTGCATTTGCAAGCTGGCTTGGGATTGTACTTTGTCTCTT 79 ************************************************************ consensus_12296#0 CTGGAATTTTATTGCTGTCATTGTCTGTTGGATCAGAGGAGGAGATTCCAAGCTCTTTTT 660 consensus_12296#1 CTGGAATTTTATTGCTGTCATTGTCTGTTGGATCAGAGGAGGAGATTCCAAGCTCTTTTT 139 ************************************************************ consensus_12296#0 CCTGGCTACTATCTACGGTATGCTTGGAATGCCTCTGTCATACTTGATGTGGTATAGGCC 720 consensus_12296#1 CCTGGCTACTATCTACGGTATGCTTGGAATGCCTCTGTCATACTTGATGTGGTATAGGCC 199 ************************************************************ consensus_12296#0 TCTGTACCGCGCAATGAGAACTGATAGCGCATTCAGCTTTGGATGGTTTTTCCTTTGCTA 780 consensus_12296#1 TCTGTACCGCGCAATGAGAACTGATAGCGCATTCAGCTTTGGATGGTTTTTCCTTTGCTA 259 ************************************************************ consensus_12296#0 CATGCTTCACATTGCCTTCTGTGTATTTGCTGCCATCGCTCCACCAGTTATATTTCGTGG 840 consensus_12296#1 CATGCTTCACATTGCCTTCTGTGTATTTGCTGCCATCGCTCCACCAGTTATATTTCGTNN 319 ********************************************************** consensus_12296#0 AAAATCATTAACTGGTATATTGGCTGCAATTGACACCTTCTCTGATCATGCAATAGTCGG 900 consensus_12296#1 NNNATCATTAACTGGTATATTGGCTGCAATTGANNNNNTCTCTGATCATGCAATAGTNNN 379 ****************************** ******************* consensus_12296#0 GATCTTTTACTTTGTCGGATTTGCCTTGTTTTGCTTGGAGACACTTGTGAGCATTTGGGT 960 consensus_12296#1 GATCTTTTACTTTGNNNNANNNNNN----------------------------------- 404 ************** * consensus_12296#0 TCTTCAGAAAGTATACATGTATTTCAGAGGGCACAAGTGAAGTGGGCCGTGGAAGAAATA 1020 consensus_12296#1 ------------------------------------------------------------ consensus_12296#0 TTACAAAAGCCCACCAAATACTATCTGATTGAGCTGCAGTTCTGTGCATACATATATGTA 1080 consensus_12296#1 ------------------------------------------------------------ consensus_12296#0 CATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAG 1140 consensus_12296#1 ------------------------------------------------------------ consensus_12296#0 TGTTATTTTTTTTAACAGGAATACTATTTTATAGTGTTGTTTTCTGGGCTGATCGGTCTG 1200 consensus_12296#1 ------------------------------------------------------------ consensus_12296#0 TTGTGTTGAACCTCAATTCTTTACCTATACAAATTGCACTTTGTTCAAAAAAAAAAAAAA 1260 consensus_12296#1 ------------------------------------------------------------ consensus_12296#0 AAAAAAAAAAAAAAAAAAAAAAAA 1284 consensus_12296#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||