cluster # 1231

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Oryza sativa
cluster # 1231 cluster # 1231 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1231#0 length = 562 sequences # 1

consensus_1231#1 length = 387 sequences # 1

consensusID : consensus_1231#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 562
fasta sequence

                              [TCGGAGACGGGGAGGTCGCCCGGTTCGGTTCTTGACGTTTCTCGAGCGACACGCCATGCTGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCCCAGTCGCTCCGCTCCGGAGCGGAGCGCGGTGGCTACAGGCCAGCGCGGCGGAGCGGAGGCTACGGTGCGGCGGCTACGGTGGTGGTGCGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGCGGTGGCTACGGTGGCGCCTGTTGCCGCAGCTACGGTGGTGGCTACGGCAGCCGCGGCGCGGCAACTCCGACGGGAACTGGAGGAACTTACGGTGGGGCCCTCATGGCCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGAACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTGTTTTTGATCGCAAGAAGAAAGCTCGTCTCGTTTGCTTTGATCAAATGAATGAATGAATGAATCTTAGTGTGCTCAAAAAAAAAA]

[+] EMBL BI795736             [TCGGAGACGGGGAGGTCGCCCGGTTCGGTTCTTGACGTTTCTCGAGCGACACGCCATGCTGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCCCAGTCGCTCCGCTCCGGAGCGGAGCGCGGTGGCTACAGGCCAGCGCGGCGGAGCGGAGGCTACGGTGCGGCGGCTACGGTGGTGGTGCGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGCGGTGGCTACGGTGGCGCCTGTTGCCGCAGCTACGGTGGTGGCTACGGCAGCCGCGGCGCGGCAACTCCGACGGGAACTGGAGGAACTTACGGTGGGGCCCTCATGGCCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGAACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTGTTTTTGATCGCAAGAAGAAAGCTCGTCTCGTTTGCTTTGATCAAATGAATGAATGAATGAATCTTAGTGTGCTCAAAAAAAAAA]




>consensus_1231#0
TCGGAGACGGGGAGGTCGCCCGGTTCGGTTCTTGACGTTTCTCGAGCGACACGCCATGCT
GCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACG
AGGCCCAGTCGCTCCGCTCCGGAGCGGAGCGCGGTGGCTACAGGCCAGCGCGGCGGAGCG
GAGGCTACGGTGCGGCGGCTACGGTGGTGGTGCGCGGCGGTGGCTACGGCCAGCGCCGTG
AAGGCGGCTACGGCGGTGCGGTGGCTACGGTGGCGCCTGTTGCCGCAGCTACGGTGGTGG
CTACGGCAGCCGCGGCGCGGCAACTCCGACGGGAACTGGAGGAACTTACGGTGGGGCCCT
CATGGCCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCA
TCGTTAGTTTTGTGTGGAACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTGTT
TTTGATCGCAAGAAGAAAGCTCGTCTCGTTTGCTTTGATCAAATGAATGAATGAATGAAT
CTTAGTGTGCTCAAAAAAAAAA

consensusID : consensus_1231#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence

                              [GCGGAGGCTACGTGNCGCGGCTACGGTGGTGTGCGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGCGGTGGCTACGGTGGCGCCTGGTGGCGGCGGCTACGGTGGTGGCTACGCAGCCGCGGCGCGGCAACTCCGACGGGAACTGGAGGAACTGACCGGTGGGGCCCTCATGCCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGAACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTGTTTTTGATCCCAAGAAGAAAGCTCGTCTCGTTTGCTTTGATCAATGAATGAATGAATGAATCTTAGTGTGCTCCGCTCTCGTCAAAAA]

[+] EMBL BM038590             [GCGGAGGCTACGTGNCGCGGCTACGGTGGTGTGCGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGCGGTGGCTACGGTGGCGCCTGGTGGCGGCGGCTACGGTGGTGGCTACGCAGCCGCGGCGCGGCAACTCCGACGGGAACTGGAGGAACTGACCGGTGGGGCCCTCATGCCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGAACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTGTTTTTGATCCCAAGAAGAAAGCTCGTCTCGTTTGCTTTGATCAATGAATGAATGAATGAATCTTAGTGTGCTCCGCTCTCGTCAAAAA]




>consensus_1231#1
GCGGAGGCTACGTGNCGCGGCTACGGTGGTGTGCGCGGCGGTGGCTACGGCCAGCGCCGT
GAAGGCGGCTACGGCGGTGCGGTGGCTACGGTGGCGCCTGGTGGCGGCGGCTACGGTGGT
GGCTACGCAGCCGCGGCGCGGCAACTCCGACGGGAACTGGAGGAACTGACCGGTGGGGCC
CTCATGCCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATC
ATCGTTAGTTTTGTGTGGAACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTGT
TTTTGATCCCAAGAAGAAAGCTCGTCTCGTTTGCTTTGATCAATGAATGAATGAATGAAT
CTTAGTGTGCTCCGCTCTCGTCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1231#0      TCGGAGACGGGGAGGTCGCCCGGTTCGGTTCTTGACGTTTCTCGAGCGACACGCCATGCT 60
consensus_1231#1      ------------------------------------------------------------
                                                                                  

consensus_1231#0      GCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACG 120
consensus_1231#1      ------------------------------------------------------------
                                                                                  

consensus_1231#0      AGGCCCAGTCGCTCCGCTCCGGAGCGGAGCGCGGTGGCTACAGGCCAGCGCGGCGGAGCG 180
consensus_1231#1      ---------------------------------------------------------GCG 3
                                                                               ***

consensus_1231#0      GAGGCTACGGTGCGGCGGCTACGGTGGTGGTGCGCGGCGGTGGCTACGGCCAGCGCCGTG 240
consensus_1231#1      GAGGCTACG-TGNCGCGGCTACGGTGGTG-TGCGCGGCGGTGGCTACGGCCAGCGCCGTG 61
                      ********* **  *************** ******************************

consensus_1231#0      AAGGCGGCTACGGCGGTGCGGTGGCTACGGTGGCGCCTGTTGCCG-CAGCTACGGTGGTG 299
consensus_1231#1      AAGGCGGCTACGGCGGTGCGGTGGCTACGGTGGCGCCTGGTGGCGGCGGCTACGGTGGTG 121
                      *************************************** ** ** * ************

consensus_1231#0      GCTACGGCAGCCGCGGCGCGGCAACTCCGACGGGAACTGGAGGAACTTAC-GGTGGGGCC 358
consensus_1231#1      GCTACG-CAGCCGCGGCGCGGCAACTCCGACGGGAACTGGAGGAACTGACCGGTGGGGCC 180
                      ****** **************************************** ** *********

consensus_1231#0      CTCATGGCCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTAT 418
consensus_1231#1      CTCATG-CCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTAT 239
                      ****** *****************************************************

consensus_1231#0      CATCGTTAGTTTTGTGTGGAACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTG 478
consensus_1231#1      CATCGTTAGTTTTGTGTGGAACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTG 299
                      ************************************************************

consensus_1231#0      TTTTTGATCGCAAGAAGAAAGCTCGTCTCGTTTGCTTTGATCAAATGAATGAATGAATGA 538
consensus_1231#1      TTTTTGATCCCAAGAAGAAAGCTCGTCTCGTTTGCTTTGATCAA-TGAATGAATGAATGA 358
                      ********* ********************************** ***************

consensus_1231#0      ATCTTAGTGTGCTCAA-----AAAAAAAA 562
consensus_1231#1      ATCTTAGTGTGCTCCGCTCTCGTCAAAAA 387
                      **************          *****