These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12315#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2237 fasta sequence [AGCCCGGCTCCGCACTGTCGGCGTGCGCGCCGCGTGCCGCCTCCCGTCCTCTCCGGAAAACTCCGGCGCGGCTTTCTTTCTTCCTCCGCCTTCTTCAAGGCTCCAGTCCAGCTGCTCGCTCCCACCACCCTTCGCCTCCCCAAGCTTCGTCTTCGCCCGCACTCCCTCCCAGCAACCGCCGCCCCGGAGAGTCCCGGATTTCGTGGCCATCTCCGTCGCACGATCGAGTGGCGAGGATGACTGAACAATTATACACTGTGGCATCTGACAGTGAAACCACTGGGGAAGATAAGTCGCAGATGTCGTTTCCTGATGTTGCTATTGGAATCGACATTGGGACCTCAAATTGTAGTGTTGCCGTTTGGACTGGCCATCAGGTTGAACTCCTCAAAAACACTCGCAACCAGAAAGGGATGAGGTCATATGTGATGTTCAAAGATGACAGCCTTTCAGCAGGAGTTACAGGAGGAGCAACCCGGGAACATGGACATGA-GGAAAGAGATA-TTTTGTCAGGAAGTGCCATATTTAACATGAAACGTTTGATT-GGGAGAATGGACACAGATGAAGTGGTTCAAGCTAGCAAGAGCCTTCCTTTTCTTGTGCAGACATTGGGTATTGGGGTGAGACCATTCATTGCAGCACTGGTGAACAATATGTGGCGGTCTACCACTCCTGAA-GAAGTTCTTGCCATCTTTCTCCTTGAATTGAAGGCCTTGGTAGAGATGCATCTCAAACATCCGGTGAGGAATGCTGTTCTTACCATTCCAGTTGCATTCAGTCGGTTTCAACAGACCAGGATTGAGAGAGCATGTGCGATGGCTGGGCTGCATGTGTTACGGCTCATGCCAGAGCCGACCGCTATCGCACTTTTGTATGCCCAACAGCAGCAGCAATTGCTACATGACAATATGGGAAGTGGCATTGAGAAAATTGCTCTGATATTTAACATGGGTGCTGGCTACTGTGATGCTGCTGTGGCTGCCACTGCTGGAGGTGTTTCTCAGATAAGAGCACTTTCAGGAAGCACTGTTGGTGGAGAGGATATCCTTCAGAATGTCATGCGCCATCTCATGCCTGATTTTGATAGTCTATATGCTGGTCAAACAATGGACAGAATCAAGTCAATTGGCTTACTCCGGATGGCAACTCAGGATGCAATTCACAAACTGGCTACGCAGGAGCATGTGGAGATCAATGTAGATTTGGGGGCTGGCCACAAAGTGTCAAAGATCTTGGACCGTGGAGAATTTGAAAAGGTGAATCAGTCTATTTTTGAGAAATGTGAAGGGATCATCAAGCAATGCCTGGCTGATGCAAAGTTAACACCAGAGGACATCAATGATGTGATATTGGTTGGAGGATGTTCCAGAATTCCTAAAATCAGAAGCGTTGTCCTTGGCTTATGCAAGAAGGACGACTCTTACAGTGGTATAGACCCACTTGAAGCTGCAGTTTCAGGGGCTGCTTTGGAAGGAGCCATTGCCTCAGGAGTATCTGACCCTTCAGGGAGCCTGGATCTGTT-GA-CAA-TTCAGGCAACTCCAATGAACCTT-GGAATT-CGTGCTGA-CGGCGGTAACTT-CGCCGCAATCATTCCAAGG-AA-CACTGCT-GTTCCTG-CGAG-AAGGGACATGCTCTTTACCACAACCCACGACAAT-CAGACCGAAGCTCTCATTG-CCGTCTATGAAGGCGAAGGGAATCAGGCTGAAGACAACCATCTATTGGGATACTTCAAGATCACCGGTATTCCAGCAGCAGCAAAGGGCACCGTCGAAATCAATGTCTGCATGGACATCGACGCTGGCAATGTCCTCAGGGTATTCGCCGGCGTCGTCAAGCCTCAGGGCCAGGCTGTTCCACCGTTCATTGAGGTGAGGATGCCAACGCTAGACGATGGCCATGGCTGGTGCGG-ACAGGCTCTCGCCAAGATGTATGGCAGTACGCTTGACCTGGCTACTATCCCGAAGAAGCTGCATCCTTGAGAAATTGCATATCGTCGCATGTAGTTGTATGACTCCATTATCTAAAAAAAATGTAGTTGTATGACTCGTATCATCCGGTGCCGTAGTTCGTGCATATGTGGTTCGACCGTGTCATGATGGTTACTTGGTTCAGTAGCTTGTTTGCCGGACTTTTTACATGTAAACATAAAGAGTGCCAATGTCATCTCTGTACAAAAAATGTGTGTCGCGTGTATAGAATAAATCAATGTTACCGGCTGTT---AAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK102685 [AGCCCGGCTCCGCACTGTCGGCGTGCGCGCCGCGTGCCGCCTCCCGTCCTCTCCGGAAAACTCCGGCGCGGCTTTCTTTCTTCCTCCGCCTTCTTCAAGGCTCCAGTCCAGCTGCTCGCTCCCACCACCCTTCGCCTCCCCAAGCTTCGTCTTCGCCCGCACTCCCTCCCAGCAACCGCCGCCCCGGAGAGTCCCGGATTTCGTGGCCATCTCCGTCGCACGATCGAGTGGCGAGGATGACTGAACAATTATACACTGTGGCATCTGACAGTGAAACCACTGGGGAAGATAAGTCGCAGATGTCGTTTCCTGATGTTGCTATTGGAATCGACATTGGGACCTCAAATTGTAGTGTTGCCGTTTGGACTGGCCATCAGGTTGAACTCCTCAAAAACACTCGCAACCAGAAAGGGATGAGGTCATATGTGATGTTCAAAGATGACAGCCTTTCAGCAGGAGTTACAGGAGGAGCAACCCGGGAACATGGACATGA GGAAAGAGATA TTTTGTCAGGAAGTGCCATATTTAACATGAAACGTTTGATT GGGAGAATGGACACAGATGAAGTGGTTCAAGCTAGCAAGAGCCTTCCTTTTCTTGTGCAGACATTGGGTATTGGGGTGAGACCATTCATTGCAGCACTGGTGAACAATATGTGGCGGTCTACCACTCCTGAA GAAGTTCTTGCCATCTTTCTCCTTGAATTGAAGGCCTTGGTAGAGATGCATCTCAAACATCCGGTGAGGAATGCTGTTCTTACCATTCCAGTTGCATTCAGTCGGTTTCAACAGACCAGGATTGAGAGAGCATGTGCGATGGCTGGGCTGCATGTGTTACGGCTCATGCCAGAGCCGACCGCTATCGCACTTTTGTATGCCCAACAGCAGCAGCAATTGCTACATGACAATATGGGAAGTGGCATTGAGAAAATTGCTCTGATATTTAACATGGGTGCTGGCTACTGTGATGCTGCTGTGGCTGCCACTGCTGGAGGTGTTTCTCAGATAAGAGCACTTTCAGGAAGCACTGTTGGTGGAGAGGATATCCTTCAGAATGTCATGCGCCATCTCATGCCTGATTTTGATAGTCTATATGCTGGTCAAACAATGGACAGAATCAAGTCAATTGGCTTACTCCGGATGGCAACTCAGGATGCAATTCACAAACTGGCTACGCAGGAGCATGTGGAGATCAATGTAGATTTGGGGGCTGGCCACAAAGTGTCAAAGATCTTGGACCGTGGAGAATTTGAAAAGGTGAATCAGTCTATTTTTGAGAAATGTGAAGGGATCATCAAGCAATGCCTGGCTGATGCAAAGTTAACACCAGAGGACATCAATGATGTGATATTGGTTGGAGGATGTTCCAGAATTCCTAAAATCAGAAGCGTTGTCCTTGGCTTATGCAAGAAGGACGACTCTTACAGTGGTATAGACCCACTTGAAGCTGCAGTTTCAGGGGCTGCTTTGGAAGGAGCCATTGCCTCAGGAGTATCTGACCCTTCAGGGAGCCTGGATCTGTT GA CAA TTCAGGCAACTCCAATGAACCTT GGAATT CGTGCTGA CGGCGGTAACTT CGCCGCAATCATTCCAAGG AA CACTGCT GTTCCTG CGAG AAGGGACATGCTCTTTACCACAACCCACGACAAT CAGACCGAAGCTCTCATTG CCGTCTATGAAGGCGAAGGGAATCAGGCTGAAGACAACCATCTATTGGGATACTTCAAGATCACCGGTATTCCAGCAGCAGCAAAGGGCACCGTCGAAATCAATGTCTGCATGGACATCGACGCTGGCAATGTCCTCAGGGTATTCGCCGGCGTCGTCAAGCCTCAGGGCCAGGCTGTTCCACCGTTCATTGAGGTGAGGATGCCAACGCTAGACGATGGCCATGGCTGGTGCGG ACAGGCTCTCGCCAAGATGTATGGCAGTACGCTTGACCTGGCTACTATCCCGAAGAAGCTGCATCCTTGAGAAATTGCATATCGTCGCATGTAGTTGTATGACTCCATTATCTAAAAAAAATGTAGTTGTATGACTCGTATCATCCGGTGCCGTAGTTCGTGCATATGTGGTTCGACCGTGTCATGATGGTTACTTGGTTCAGTAGCTTGTTTGCCGGACTTTTTACATGTAAACATAAAGAGTGCCAATGTCATCTCTGTACAAAAAATGTGTGTCGCGTGTATAGAATAAATCAATGTTACC ] [+] EMBL AU162159 [ GTCTTCGCCCGCACTCCCTCCCAGCAACCGCCGCCCCGGAGAGTCCCGGATTTCGTGGCCATCTCCGTCGCACGATCGAGTGGCGAGGATGACTGAACAATTATACACTGTGGCATCTGACAGTGAAACCACTGGGGAAGATAAGTCGCAGATGTCGTTTCCTGATGTTGCTATTGGAATCGACATTGGGACCTCAAATTGTAGTGTTGCCGTTTGGACTGGCCATCAGGTTGATCTCCTCAAAAACACTCGCAACCAGAAAGGGATGAGGTCATATGTGATGTTCAAAGATGACAGCCTTTCAGCAGGAGTTACAGGAGGAGCAACCCGGGAACATGGACATGAGGGAAAGAGATA TTTTGTCAGGAAGTGCCATATTTAACATGAAACGTTTGATTGGGGGGAATGGACACAGATGAAGTGGNTCAAGCTAGCA ] [+] EMBL AU161278 [ GTCTTCGCCCGCACTCCCTCCCAGCAACCGCCGCCCCGGAGAGTCCCGGATTTNGTGGCCATCTCCGTCGCACGATCGAGTGGCGAGGATGACTGAACAATTATACACTGTGGCATCTGACAGTGAAACCACTGGGGAAGATAAGTCGCAGATGTCGTTTCCTGATGTTGCTATTGGAATCGACATTGGGACCTCAAATTGTAGTGTTGCCGTTTGGACTGGCCATCAGGTTGAACTCCTCAAAAACACTCGCAACCAGAAAGGGATGAGGTCATATGTGATGTTCAAAGATGACAGCCTTTCAGCAGGAGTTACAGGAGGAGCAACCCGGGAACATGGACATGA GGAAAGAGATATTTTTGTCAGGAAGTGCCATATTTAACATGNAACGNTTGATT GGGAGAATGGGCACAGATGn ] [+] EMBL C28639 [ ACCTCAAATTGTAGTGTTGCCGTTTGGACTGGCCATCAGGTTGAACTCCTCAAAAACACTCGCAACCAGAAAGGGATGAGGTCATATGTGATGTTCAAAGATGACAGCCTTTCAGCAGGAGTTACAGGAGGAGCAACCCGGGAACATGGACATGA GGAAAGAGATA TTTTGTCAGGAAGTGCCATATTTAACATGAAACGTTTGATT GGGAGAATGGACACAGATGAAGTGGTTCAAGCTAGCAAGAGCCTTCCTTTTCTTGTGCAGACATTGGGTATTGGGGTGAGACCATTCATTGCAGCACTGGTGAACAATATGTGGCGGTCTACCACTNCTGAAGGAAGTTCTTGCCATCTTTCTCCTTGAATTGAAGGCCTTGGTAGAGATGCATCTCAAACATCCGGTGAGGGATGCTGTTCTTACCATTCCAGTTG ] [+] EMBL AU100975 [ AAGGGATGAGGTCATATGTGATGTTCAAAGATGACAGCCTTTCAGCAGGAGTTACAGGAGGAGCAACCCGGGAACATGGACATGA GGAAAGAGATA TTTTGTCAGGAAGTGCCATATTTAACATGAAACGTTTGATT GGGAGAATGGACACAGATGAAGTGGTTCAAGCTAGCAAGAGCCTTCCTTTTCTTGTGCAGACATTGGGTATTGGGGTNAGACCATTCATTGCAGCACTGGTGAACAATATGTGGCGGTCTACCACTCCTGAA GAAGTTCTTGCCATCTTTCTCCTTGAATTGAAGGCCTTGGTAGAGATGCATCTCAAACATCCGGTGAGGAATGCTGTTCTTACCATTCCAGTTGCATTCAGTCGGTTTCAACAGACCAGGATTGAGAGAGCATGTGCGATGGCTGGGCTGCATGTGTTACGGCTCATGCCAGAGCCGACCGCTATCGCACTTTTGTATGCCCAACAGCAGCAGCAATTGCTACATGACAATATGGGAAGTGGCATTGAGAAAAaa ] [+] EMBL C97386 [ ntngaTGATGCTGCTGTGGCTGCCACTGCTGGAGGTGTTTCTCAGATAAGAGCACTTTCAGGAAGCACTGTTGGTGGAGAGGATATCCTTCAGAATGTCATGCGCCATCTCATGCCTGATTTTGATAGTCTATATGCTGGTCAAACAATGGACAGAATCAAGTCAATTGGCTTACTCCGGATGGCAACTCAGGATGCAATTCACAAACTGGCTACGCAGGAGCATGTGGAGATCAATGTAGATTTGGGGGCTGGCCACAAAGTGTCAAAGATCTTGGACCGTGGAGAATTTGAAAAGGTGAATCAGTCTATTTTTGAGAAATGTGAAGGGATCATCAAGCAATGCCTGGCTGATGCAAAGTTAACACCAGAGGACATCAATGATGTGATATTGGTTGGAGGATGTTCCAGAATTCCTAAAATCAGAAGCGTTGTCCTTGGCTTATGCAAGAAGGACGACTCTTACAGTGGTATAGACCCACTTGAAGCTGCAGTTTCAGGGGCTGCTTTGGAAGGAGCCATTGCCTCAGGAGTATCTGACCCTTC ] [+] EMBL C97387 [ GATCTGTTGGACCAATTTCAGGCAACTCCCATGAACCTTGGGAATTNCGTGCTGACCGCCGGTAACTTNCGCCGCAATCATTCCCAGGNAACCACTGCTGGTTCCTGCCGAGAAAGGGAC TGCTCTTTACCACAACCCACGACAATCCAGACCGAAGCTCTC TTGCCCGTCTATGAAGGCGAAGGGAATCAGGCTGAAGACAACC TCTATTGGGATACTTCAAGATCACCGGTATTCCAGCAGCAGCAAAGGGCACCGTCGAAATCAATGTCTGCATGGACATCGACGCTGGCAATGTCCTCAGGGTATTCGCCGGCGTCGTCAAGCCTCAGGGCCAGGCTGTTCCACCGTTCATTGAGGTGAGGATGCCAACGCTAGACGATGGCCATGGCTGGTGCGGAACAGGCTCTCGCCAAGATGTATGGCAGTACGCTTGACCTGGCTA TATCCCGAAGAAGCTGCATCCTTGAGAAATTGCATATCGTCGCATGTAGTTGTATGACTCCATTATCTAAAAAAAATGTAGTTGTATGACTCGTATCATCCGGTGCCGTAGTTCGTGCATATGTGGTTCGACCGTGTCATGATGGTTACTTGGTTCAGTAGCTTGTTTGCCGGACTTTTTACATGTAAACATAAAGAGTGCCAATGTCATCTCTGTACAAAAAATGTGTGTCGCGTGTATAGAATAAATCAATGTTACCGGCTGTTCGGAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU161277 [ ATGANCCTT GGAATT CGTGCTGA CGGCGGTAA TT CGCCGCAATCATTCCAAGG AA CACTGCT GTTCCTG CGAG AAGGGACATGCTCTTTACCACAACCCACGACAAT CAGACCGAAGCTCTCATTG CCGTCTATGAAGGCGAAGGGAATCAGGCTGAAGACAACCATCTATTGGGATACTTCAAGATCACCGGTATTCCAGCAGCAGCAAAGGGCACCGTCGAAATCAATGTCTGCATGGACATCGACGCTGGCAATGTCCTCAGGGTATTCGCCGGCGTCGTCAAGCCTCAGGGCCAGGCTGTTCCACCGTTCATTGAGGTGAGGATGCCAACGCTAGACGATGGCCATGGCTGGTGCGG ACAGGCTCTCGCCAAGATGTATGGCAGTACGCTTGACCTGGCTACTATCCCGAAGAAGCTGCATCCTTGAGAAATTGCATATCGTCGCATGTAGTTGTATGACTCCATTATCTAAAAAAAATGTAGTTGTATNACTCGTATCATCCGGTGCCGTAGTTCGTGCATATGTGGTTCGACCGTGTCATGATGGTTACTTGGTTCAGTAGCTTGTTTGCCGGACTTTTTACATGTAAACATAAAGAGTGCCAATGTCATCTCTGTACAAAAAATGTGTGTCGCGTGTATAGAATAAATCAATGTTACCGGCTGTT AAAAAAAAAAAAAAAAA ] [+] EMBL CA767519 [ AAGGGAATCAGGCTGAAGACAACCATCTATTGGGATACTTCAAGATCACCGGTATTCCAGCAGCAGCAAAGGGCACCGTCGAAATCAATGTCTGCATGGACATCGACGCTGGCAATGTCCTCAGGGTATTCGCCGGCGTCGTCAAGCCTCAGGGCCAGGCTGTTCCACCGTTCATTGAGGTGAGGATGCCAACGCTAGACGATGGCCATGGCTGGTGCGG ACAGGCTCTCGCCAAGATGTATGGCAGTACGCTTGACCTGGCTACTATCCCGAAGAAGCTGCATCCTTGAGAAACTGCATATCGTCGTATGTAGTTGTATGACTCCATTATCTAAAAAAAATGTAGTTGTATGACTCGTATCATCCGGTGCCGTAGTTCGTGCATATGTGGTTCGACCGTGTCATGATGGTTACTTGGTTCCGTAGCTTGTTTGCCGGACTTTTTACATGTAAACATAAAGAGTGCCAATGTCGTCTCTGTACAAAAAATGTGTGTCGCGTGTATAGAATAAATCAATGTTACC ] [+] EMBL AU058039 [ ACGCTGGCAATGTCCTCAGGGTATTCGCCGGCGTCGTCAAGCCTCAGGGCCAGGCTGTTCCACCGTTCATTGAGGTGAGGATGCCAACGCTAGACGATGGCCATGGCTGGTGCGG ACAGGCTCTCGCCAAGATGTATGGCAGTACGCTTGACCTGGCTACTATCCCGAAGAAGCTGCATCCTTGAGAAATTGCATATCGTCGCATGTAGTTGTATGACTCCATTATCTAAAAAAAATGTAGTTGTATGACTCGTATCATCCGGTGCCGTAGTTCGTGCNTATGTGGTTCGACCGTGTCATGATGGTTACTTGGTTCAGTAGCTTGTTTGCCGGACTTTTTACATGTAAACATAAAGAGTGCCAATGTCATCTCTGTACAAAAAATGTGTGTCGCGTGTATAGAATAAATCAATGTTACCGGCTGTT AAAAAAAAAAAAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||