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Oryza sativa
cluster # 12318 cluster # 12318       Sequences # 10       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12318#0 length = 1396 sequences # 6  
consensus_12318#1 length = 800 sequences # 1  
consensus_12318#2 length = 610 sequences # 1  
consensus_12318#3 length = 422 sequences # 2  

consensusID : consensus_12318#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1396
fasta sequence
                              [TTTTTTTTTGGCACTCCGAACGCAAGTCCTAGATTGAAGCTGAGACTTGCCAGCCAGCCATTTTATTCCTCCTTGAATGGAAAAGATGAAGGCAATAATGATGT-GATGTAGT-ACAG-CAAAGGGTTCACTTTGGAAA-CATGAGTTGCTGTACAGCAAAGGATTCCTAGTTTTAGAAACTCTGAAAGTGAATCACTCTGTACTGTACACCCTTTCTTCTGCTGGCCTCAGCTTGTGTACCTAAAATGTTCTCCAAGGTAGATGTGCACATTCCAAAAACATAAGTTGCTAACTGCCACTAGCAACATTTATGGGATGATTGTCTAGACTTCAATGCAATAGCTTCAATGGCTACTACTTTTTCTAACTATAACTGTAATAATAAACCAAAGGGTAAAGCCTCATACATCATCAAAAGATTAGACACAAGTACTCAATTCCCTCCAAAATTTTAGCATAATATACTTCACCAAACATGACCAACATAGGCTTATCATGAATTCATGATACTACATCAATGCTTATATGCAGAGAGAATGCAAGCATAGAAGATACAGCAAGAAATTAAGATGCCAATAAACAGATATAACGTGCCCAATCCCGATATGAGCTTCCATGGTTGGTTGGCAAACAAAAGTACCAAAAAGAACATGAGAATATACCCGTACTCCTACTAAACTGTTACCAAAGTCAAGAATTGAACTGTTACACTCGTCTTGTTCCTCAGGTCTAGCCTGGTCCTCTAGCAGACCCAGGTGCACCTTCACGTTGGCTCATATGGGGCGCGAGCATCTCCATCACAGCTCTCATAGCGTCTGCAGCCTGCTCTGGTCCTGCCAAGTTTATTTGGATGCCAGCATCCCTGTGCATGCCTGGTTGGCCATGCT-CCCTTCATGTCCACTTGAAGTTTGTTGTGGGCGATTTCCTTCAGTAGAGCCCGTGAACGAAAAAGGAGGAGGGACTGCAGTATTGGTTGGAAAAGAAGGAGGTGGGGTATGGTTACTTGAAGTCTCTGTCTGAGGTGTTCCTTGACTGTTCCCATTGACATTTGCATGATTAAAAATGTCATTCAAATTTATATTTATGGAATGCTCAGATGATTGTTGACTGATATCAGACACACGGTTGATGATATT-GGGAAGAACTCAGGAGTTGGAGAATTTCCAGGAGGAAAAAACGTGAATGGAACACCACTGCTTGATTGACCAGGAAACTGTCCATGTGATGCTTGACTATTGGGGTGCGTATGTATTCTG-TCTTCTGGTGGACCTCGATGTTCAGCCAGCTTCTTTTTGGTAACCTCGATATTCTGCCAGACATTTTCATTACTAGGATCAAGCTCGGAGGCTTTCAAATATCCCTTGTACAAAGCATCGTGGTATTTTCCTCGTGCCGCTCG]

[-] EMBL BQ909261             [TTTTTTTTTGGCACTCCGAACGCAAGTCCTAGATTGAAGCTGAGACTTGCCAGCCAGCCATTTTATTCCTCCTTGAATGGAAAAGATGAAGGCAATAATGATGT GATGTAGT ACAG CAAAGGGTTCACTTTGGAAA CAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB681954             [                                      tcttttttTTGCCAGCCAGCCATTTTATTCCTCCTTGAATGCAAAAGATGAAGGCAATAATGATGT GATGTAGT ACAG CAAAGGGTTCACTTTGGAAA CATGAGTTGCTGTACAGCAAAGGATTCCTAGTTTTAGAAACTCTGAAAGTGAATCACTCTGTACTGTACACCCTTTCTTCTGCTGGCCTCAGCTTGTGTACCTAAAATGTTCTCCAAGGTAGATGTGCACATTCCAAAAACATAAGTTGCTAACTGCCACTAGCAACATTTATGGGATGATTGTCTAGACTTCAATGCAATAGCTTCAATGGCTACTACTTTTTCTAACTATAACTGTAATAATAAACCAAAGGGTAAAGCCTCATACATCATCAAAAGATTAGACACAAGTACTCAATTCCCTCCAAAATTTTAGCATAATATACTTCACCAAACATGACCAACATAGGCTTATCATGAATTCATGATACTACATCAATGCTTATATGCAGAGAGAATGCAAGCATAGAAGATACAGCAAGAAATTAAGATGCCAATAAACAGATATAACGTGCCCAATCCCGATATGAGCTTCCATGGTTGGTTGGCAAACAAAAGTACCAAAAAGAACATGAGAATATACCCGTACTCCTACTAAACTGTTACCAAAGTCAAGAATTGAACTGTTACACTCGTCTTGTTCCTCAGGTCTAGCCTGGTCCTCTAGCAGACCCAGGTGCACCTTCACGTTGGCTCATATGGGGCGCGAGCATCTCCATCACAGCTCTCATAGCGTCTGCAGCCTGCTCTGGTCCTGCCAAGTTTATTTGGATGCCAGCATCCCTGTGCATGCCTGGTTGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL AA754385             [                                                                                                   GATGTGGATGTAGTKACAGCCAAAGGGTTCKCTTTGGAAAKCATGAGTTGCTGTACAGCAAAGGATTCCTAGTTTTAGAAACTCTGAAAGTGAATCACTCTGTACTGTACACCCTTTCTTCTGCTGGCCTCAGCTTGTGTACCTAAAATGTTCTCCAAGGTAGATGTGCACATTCCAAAAACATAAGTTGCTAACTGCCACTAGCAACATTTATGGGATGATTGTCTAGACTTCAATGCAATAGCTTCAATGGCTACTACTTTTTCTAKCTATAACTGTAATAATAAACCAAAGGGTAAAGCCTCATACATCATCAAAAactcg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSA420717            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ttttttTACAGCAAGAAATTAAGATGC  ATAAACAGATATAACGTGCCCAATCCCGATATGAGCTTCCATGGTTGGTTGGCAAACAAAAGTACCAAAAAGAACATGAGAATATACCCGTACTCCTACTAAACTGTTACCAAAGTCAAGAATTGAACTGTTACACTCGTCTTGTTCCTCAGGTCTAGCCTGGTCCTCTAGCAGACCCAGGTGCACCTTCACGTTGGCTCATATGGGGCGCGAGCATCTCCATCACAGCTCTCATAGCGTCTGCAGCCTGCTCTGGTCCTGCCAAGTTTATTTGGATGCCAGCATCCCTGTGCATGCCTGGTTGGCCATGCTCCCCTTCATGTCCACTTGAAGTTTGTTGTGGGCGATTTCCTTCAGTAGAGCCCGTGAACGAAAAAGGAGGAGGGACTGCAGTATTGGTTGGAAAAGAAGGAGGTGGGGTATGGTTACTTGAAGTCTCTGTCTGAGGTGTTCCTTGACTGTTCCCATTGACATTTGCATGATTAAAAATGTCATTCAAATTTATATTTATGGAATGCTCAGATGATTGTTGACTGATATCAGACACACGGTTGATGATATT GGGAAGAACTCAGGAGTTGGAGAATTTCCAGGAGGAAAAAACGTGAATGGAACACCACTGCTTGATTGACCAGGAAACTGTCCATGTGATGCTTGACTATTGGGGTGCGTATGTATTCTG TCTTCTGGTGGACCTCGATGTTCAGCCAG                                                                                                                  ]
[+] EMBL OSA298286            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTAAGATGCCAATAAACAGATATAACGTGCCCAATCCCGATATGAGCTTCCATGGTTGGTTGGCAAACAAAAGTACCAAAAAGAACATGAGAATATACCCGTACTCCTACTAAACTGTTACCAAAGTCAAGAATTGAACTGTTACACTCGTCTTGTTCCTCAGGTCTAGCCTGGTCCTCTAGCAGACCCAGGTGCACCTTCACGTTGGCTCATATGGGGCGCGAGCATCTCCATCACAGCTCTCATAGCGTCTGCAGCCTGCTCTGGTCCTGCCAAGTTTATTTGGATGCCAGCATCCCTGTGCATGCCTGGTTGGCCATGCT CCCTTCAGAACCACTTGAAGTTTGTTGTGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL BE229380             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGAAGGAGGTGGGGWATGGTTACCTGAAGTCTCTGTCTGAAGTGTVCCTTGKCTGTTCCCATTGACA TTGCATGATTAAAAATGTCATTCAAATTTATATTTATGGAATGCTCAGATGATTGTTGACTGATATCAGACACACGGTTGATGATATTMTCGRAGAACTCAGGAGTTGGAGAATTTCCAGGAGGAAAAAACGTGAATGGAACACCACTGCTTGATTGACCAGGAAACTGTCCATGTGATGCTTGACT TTGGGGTGCGTATGTATTCTGTTCTTCTGGTGGACCTCGCTGTTCAGCCAGCTTCTTTTTGGTAACCTCGATATTCTGCCAGACATTTTCATTACTAGGATCAAGCTCGGAGGCTTTCAAATATCCCTTGTACAAAGCATCGTGGTATTTTCCTCGTGCCGCTCG]


>consensus_12318#0 TTTTTTTTTGGCACTCCGAACGCAAGTCCTAGATTGAAGCTGAGACTTGCCAGCCAGCCA TTTTATTCCTCCTTGAATGGAAAAGATGAAGGCAATAATGATGTGATGTAGTACAGCAAA GGGTTCACTTTGGAAACATGAGTTGCTGTACAGCAAAGGATTCCTAGTTTTAGAAACTCT GAAAGTGAATCACTCTGTACTGTACACCCTTTCTTCTGCTGGCCTCAGCTTGTGTACCTA AAATGTTCTCCAAGGTAGATGTGCACATTCCAAAAACATAAGTTGCTAACTGCCACTAGC AACATTTATGGGATGATTGTCTAGACTTCAATGCAATAGCTTCAATGGCTACTACTTTTT CTAACTATAACTGTAATAATAAACCAAAGGGTAAAGCCTCATACATCATCAAAAGATTAG ACACAAGTACTCAATTCCCTCCAAAATTTTAGCATAATATACTTCACCAAACATGACCAA CATAGGCTTATCATGAATTCATGATACTACATCAATGCTTATATGCAGAGAGAATGCAAG CATAGAAGATACAGCAAGAAATTAAGATGCCAATAAACAGATATAACGTGCCCAATCCCG ATATGAGCTTCCATGGTTGGTTGGCAAACAAAAGTACCAAAAAGAACATGAGAATATACC CGTACTCCTACTAAACTGTTACCAAAGTCAAGAATTGAACTGTTACACTCGTCTTGTTCC TCAGGTCTAGCCTGGTCCTCTAGCAGACCCAGGTGCACCTTCACGTTGGCTCATATGGGG CGCGAGCATCTCCATCACAGCTCTCATAGCGTCTGCAGCCTGCTCTGGTCCTGCCAAGTT TATTTGGATGCCAGCATCCCTGTGCATGCCTGGTTGGCCATGCTCCCTTCATGTCCACTT GAAGTTTGTTGTGGGCGATTTCCTTCAGTAGAGCCCGTGAACGAAAAAGGAGGAGGGACT GCAGTATTGGTTGGAAAAGAAGGAGGTGGGGTATGGTTACTTGAAGTCTCTGTCTGAGGT GTTCCTTGACTGTTCCCATTGACATTTGCATGATTAAAAATGTCATTCAAATTTATATTT ATGGAATGCTCAGATGATTGTTGACTGATATCAGACACACGGTTGATGATATTGGGAAGA ACTCAGGAGTTGGAGAATTTCCAGGAGGAAAAAACGTGAATGGAACACCACTGCTTGATT GACCAGGAAACTGTCCATGTGATGCTTGACTATTGGGGTGCGTATGTATTCTGTCTTCTG GTGGACCTCGATGTTCAGCCAGCTTCTTTTTGGTAACCTCGATATTCTGCCAGACATTTT CATTACTAGGATCAAGCTCGGAGGCTTTCAAATATCCCTTGTACAAAGCATCGTGGTATT TTCCTCGTGCCGCTCG



consensusID : consensus_12318#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 800
fasta sequence
                              [ACCAGGAAACTGTCCATGTGATGCTTGACTTTGGGGTGCGTATGTATTCTATACACAACAAAACTGATCAGTTGGTAATTTTGAAAGGACAAAGAAATCCCCCAAAAGAATGAATTTCATGTAATCAAACAATATCAGCATTCTATACCTATAACCGAAGTTCCAATTAGGAGTTTTAAATGCACAAATTAGTTTCTAAAAAGAAAACAATGGACTGTATGTTTGCCAGAGGTAGGACATATCTCAAAGTCCAGTAAAAAGCACACGTGGTTTCCAGTTACAGTACCTGTTCTTCTGGTGGACCTCGCTGTTCAGCCAGCTTCTTTTTGGTAACCTCGATATTCTGCCAGACATTTTCATTACTAGGATCAAGCTCGGAGGCTTTCAAATATCCCTTGTACAAAGCATCGTGGTATTTTCCCAAAGCAAAATAAGCAGATCCAAGTCGGCTGTATGCTTTACTGTAGTTAGGGTCAATTTCAATTGACTTCAGGCAATCCTCAACAGCTTCATTGAACATATTAAGAAGGGTATATGCAGCAGCCCTGTTACAATAGTAAATAGCATTATTTCGGCTCAACGCAATAGCACAGGTGTACAGTTCTACAGCTTTAAGATGTTGTTTTGACCTCATGAATTCATTACCTTTTGACTTGAAGAATTCTGCAAGGTCTCCTAAGCTTGCCCTTTTCCTTCCTGACTTCCGCATCCCCAGCAATGCATCATCGAAGAATTGTGTTGCTTTTGAAAGCTGGCCAGGATCTTCAGCTCCAGCAGATGATGTTTTAAAGAAAGTGATT]

[-] EMBL CB681953             [ACCAGGAAACTGTCCATGTGATGCTTGACTTTGGGGTGCGTATGTATTCTATACACAACAAAACTGATCAGTTGGTAATTTTGAAAGGACAAAGAAATCCCCCAAAAGAATGAATTTCATGTAATCAAACAATATCAGCATTCTATACCTATAACCGAAGTTCCAATTAGGAGTTTTAAATGCACAAATTAGTTTCTAAAAAGAAAACAATGGACTGTATGTTTGCCAGAGGTAGGACATATCTCAAAGTCCAGTAAAAAGCACACGTGGTTTCCAGTTACAGTACCTGTTCTTCTGGTGGACCTCGCTGTTCAGCCAGCTTCTTTTTGGTAACCTCGATATTCTGCCAGACATTTTCATTACTAGGATCAAGCTCGGAGGCTTTCAAATATCCCTTGTACAAAGCATCGTGGTATTTTCCCAAAGCAAAATAAGCAGATCCAAGTCGGCTGTATGCTTTACTGTAGTTAGGGTCAATTTCAATTGACTTCAGGCAATCCTCAACAGCTTCATTGAACATATTAAGAAGGGTATATGCAGCAGCCCTGTTACAATAGTAAATAGCATTATTTCGGCTCAACGCAATAGCACAGGTGTACAGTTCTACAGCTTTAAGATGTTGTTTTGACCTCATGAATTCATTACCTTTTGACTTGAAGAATTCTGCAAGGTCTCCTAAGCTTGCCCTTTTCCTTCCTGACTTCCGCATCCCCAGCAATGCATCATCGAAGAATTGTGTTGCTTTTGAAAGCTGGCCAGGATCTTCAGCTCCAGCAGATGATGTTTTAAAGAAAGTGATT]


>consensus_12318#1 ACCAGGAAACTGTCCATGTGATGCTTGACTTTGGGGTGCGTATGTATTCTATACACAACA AAACTGATCAGTTGGTAATTTTGAAAGGACAAAGAAATCCCCCAAAAGAATGAATTTCAT GTAATCAAACAATATCAGCATTCTATACCTATAACCGAAGTTCCAATTAGGAGTTTTAAA TGCACAAATTAGTTTCTAAAAAGAAAACAATGGACTGTATGTTTGCCAGAGGTAGGACAT ATCTCAAAGTCCAGTAAAAAGCACACGTGGTTTCCAGTTACAGTACCTGTTCTTCTGGTG GACCTCGCTGTTCAGCCAGCTTCTTTTTGGTAACCTCGATATTCTGCCAGACATTTTCAT TACTAGGATCAAGCTCGGAGGCTTTCAAATATCCCTTGTACAAAGCATCGTGGTATTTTC CCAAAGCAAAATAAGCAGATCCAAGTCGGCTGTATGCTTTACTGTAGTTAGGGTCAATTT CAATTGACTTCAGGCAATCCTCAACAGCTTCATTGAACATATTAAGAAGGGTATATGCAG CAGCCCTGTTACAATAGTAAATAGCATTATTTCGGCTCAACGCAATAGCACAGGTGTACA GTTCTACAGCTTTAAGATGTTGTTTTGACCTCATGAATTCATTACCTTTTGACTTGAAGA ATTCTGCAAGGTCTCCTAAGCTTGCCCTTTTCCTTCCTGACTTCCGCATCCCCAGCAATG CATCATCGAAGAATTGTGTTGCTTTTGAAAGCTGGCCAGGATCTTCAGCTCCAGCAGATG ATGTTTTAAAGAAAGTGATT



consensusID : consensus_12318#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence
                              [TTTTTTTTTTTTTTTTAGCATAATATACTTCACCAAACATGACCAACATAGGCTTATCATGAATTCATGATACTACATCAATGCTTATATGCAGAGAGAATGCAAGCATAGAAAATACAGCAAGAAATTAAGATGCCAATAAACAGATATAACGTGCCCAATCCCGATATGAGCTTCCATGGTTGGTTGGCAAACAAAAGTACCAAAAAGAACATGAGAATATACCCGTACTCCTACTAAACTGTTACCAAAGTCAAGAATTGAACTGTTACACTCGTCTTGTTCCTCAGGTCTAGCCTGGTCCTCTAGCAAACCCAGGTGCACCTTCACGTTGGCTCATATGGGGCGCGAGCATCTCCATCACAGCTCTCATAGCGTCTGCAGCCTGCTCTGGTCCTGCCAAGTTTATTTGGATGCCAGCATCCCTGTGCATGCCTGGTTGGCCATGCTCCCCTTCATGTCCACTTGAAGTTTGTTGTGGGCGATTTCCTTCAGTAGAGCCCGTGAACGAAAAAGGAGGAGGGACTGCAGTATTGGTTGGAAAGAAGGAGGTGGNGTATGGTTACCTTGAAGTCTCTGTCTGAGGTGTTCCCCCCTTGTCTCGTCCTCT]

[+] EMBL CA759696             [TTTTTTTTTTTTTTTTAGCATAATATACTTCACCAAACATGACCAACATAGGCTTATCATGAATTCATGATACTACATCAATGCTTATATGCAGAGAGAATGCAAGCATAGAAAATACAGCAAGAAATTAAGATGCCAATAAACAGATATAACGTGCCCAATCCCGATATGAGCTTCCATGGTTGGTTGGCAAACAAAAGTACCAAAAAGAACATGAGAATATACCCGTACTCCTACTAAACTGTTACCAAAGTCAAGAATTGAACTGTTACACTCGTCTTGTTCCTCAGGTCTAGCCTGGTCCTCTAGCAAACCCAGGTGCACCTTCACGTTGGCTCATATGGGGCGCGAGCATCTCCATCACAGCTCTCATAGCGTCTGCAGCCTGCTCTGGTCCTGCCAAGTTTATTTGGATGCCAGCATCCCTGTGCATGCCTGGTTGGCCATGCTCCCCTTCATGTCCACTTGAAGTTTGTTGTGGGCGATTTCCTTCAGTAGAGCCCGTGAACGAAAAAGGAGGAGGGACTGCAGTATTGGTTGGAAAGAAGGAGGTGGNGTATGGTTACCTTGAAGTCTCTGTCTGAGGTGTTCCCCCCTTGTCTCGTCCTCT]


>consensus_12318#2 TTTTTTTTTTTTTTTTAGCATAATATACTTCACCAAACATGACCAACATAGGCTTATCAT GAATTCATGATACTACATCAATGCTTATATGCAGAGAGAATGCAAGCATAGAAAATACAG CAAGAAATTAAGATGCCAATAAACAGATATAACGTGCCCAATCCCGATATGAGCTTCCAT GGTTGGTTGGCAAACAAAAGTACCAAAAAGAACATGAGAATATACCCGTACTCCTACTAA ACTGTTACCAAAGTCAAGAATTGAACTGTTACACTCGTCTTGTTCCTCAGGTCTAGCCTG GTCCTCTAGCAAACCCAGGTGCACCTTCACGTTGGCTCATATGGGGCGCGAGCATCTCCA TCACAGCTCTCATAGCGTCTGCAGCCTGCTCTGGTCCTGCCAAGTTTATTTGGATGCCAG CATCCCTGTGCATGCCTGGTTGGCCATGCTCCCCTTCATGTCCACTTGAAGTTTGTTGTG GGCGATTTCCTTCAGTAGAGCCCGTGAACGAAAAAGGAGGAGGGACTGCAGTATTGGTTG GAAAGAAGGAGGTGGNGTATGGTTACCTTGAAGTCTCTGTCTGAGGTGTTCCCCCCTTGT CTCGTCCTCT



consensusID : consensus_12318#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 422
fasta sequence
                              [TTTTTTTTTTTTTTTTGAAGATACAGCAAGAAATTAAGATGCCAATAAACAGATATAACGTGCCCAATCCCGATATGAGCTTCCATGGTTGGTTGGCAAACAAAAGTACCAAAAAGAACATGAGAATATACCCGTACTCCTACTAAACTGTTACCAAAGTCAAGAA-TTGAAC-TGTTACACTCGTCTTGTTCCTCAGGTCTAGCCTGGTCCTCTAGCAGACCCAGGTGCACCTTCACGTTGGCTCATATGGGGCGCGAGCATCTCCATCACAGCTCTCATAGCGTCTGCAGCCTGCTCTGGNCCTGCCAAGTTTATTTGGATGCCAGATCCCTGTTGATGGCTGGTTGGGCATGGTCCCCTTCATGTTCACTTGAAGGTTGTGGGGGGGGAATTCCTTCAGTAAANGCCGTGAACGAAAAAGG]

[-] EMBL AU092307             [TTTTTTTTTTTTTTTTGAAGATACAGCAAGAAATTAAGATGCCAATAAACAGATATAACGTGCCCAATCCCGATATGAGCTTCCATGGTTGGTTGGCAAACAAAAGTACCAAAAAGAACATGAGAATATACCCGTACTCCTACTAAACTGTTACCAAAGTCAAGAA TTGAAC TGTTACACTCGTCTTGTTCCTCAGGTCTAGCCTGGTCCTCTAGCAGACCCAGGTGCACCTTCACGTTGGCTCATATGGGGCGCGAGCATCTCCATCACAGCTCTCATAGCGTCTGCAGCCTGCTCTGGNCCTGCCAAG                                                                                                                ]
[-] EMBL BM418996             [                                                                                                             CAAAAAGAACATGAGAATATACCCGTACTCCTACTAAACTGTTACCAAAGTCAAGAATTTGAACTTGTTACACTCGTCTTGTTCCTCAGGTCTAGCCTGGTCCTCTAGCAGACCCAGGTGCACCTTCACGTTGGCTCATATGGGGCGCGAGCATCTCCATCACAGGTCTCATAGCGTCTGGAG CTGGTCTGGTCCTG CAAGTTTATTTGGATGCCAGATCCCTGTTGATGGCTGGTTGGGCATGGTCCCCTTCATGTTCACTTGAAGGTTGTGGGGGGGGAATTCCTTCAGTAAANGCCGTGAACGAAAAAGG]


>consensus_12318#3 TTTTTTTTTTTTTTTTGAAGATACAGCAAGAAATTAAGATGCCAATAAACAGATATAACG TGCCCAATCCCGATATGAGCTTCCATGGTTGGTTGGCAAACAAAAGTACCAAAAAGAACA TGAGAATATACCCGTACTCCTACTAAACTGTTACCAAAGTCAAGAATTGAACTGTTACAC TCGTCTTGTTCCTCAGGTCTAGCCTGGTCCTCTAGCAGACCCAGGTGCACCTTCACGTTG GCTCATATGGGGCGCGAGCATCTCCATCACAGCTCTCATAGCGTCTGCAGCCTGCTCTGG NCCTGCCAAGTTTATTTGGATGCCAGATCCCTGTTGATGGCTGGTTGGGCATGGTCCCCT TCATGTTCACTTGAAGGTTGTGGGGGGGGAATTCCTTCAGTAAANGCCGTGAACGAAAAA GG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12318#2      ------------------------------------------------------------
consensus_12318#3      ------------------------------------------------------------
consensus_12318#0      TTTTTTTTTGGCACTCCGAACGCAAGTCCTAGATTGAAGCTGAGACTTGCCAGCCAGCCA 60
consensus_12318#1      ------------------------------------------------------------
                                                                                   

consensus_12318#2      ------------------------------------------------------------
consensus_12318#3      ------------------------------------------------------------
consensus_12318#0      TTTTATTCCTCCTTGAATGGAAAAGATGAAGGCAATAATGATGTGATGTAGTACAGCAAA 120
consensus_12318#1      ------------------------------------------------------------
                                                                                   

consensus_12318#2      ------------------------------------------------------------
consensus_12318#3      ------------------------------------------------------------
consensus_12318#0      GGGTTCACTTTGGAAACATGAGTTGCTGTACAGCAAAGGATTCCTAGTTTTAGAAACTCT 180
consensus_12318#1      ------------------------------------------------------------
                                                                                   

consensus_12318#2      ------------------------------------------------------------
consensus_12318#3      ------------------------------------------------------------
consensus_12318#0      GAAAGTGAATCACTCTGTACTGTACACCCTTTCTTCTGCTGGCCTCAGCTTGTGTACCTA 240
consensus_12318#1      ------------------------------------------------------------
                                                                                   

consensus_12318#2      ------------------------------------------------------------
consensus_12318#3      ------------------------------------------------------------
consensus_12318#0      AAATGTTCTCCAAGGTAGATGTGCACATTCCAAAAACATAAGTTGCTAACTGCCACTAGC 300
consensus_12318#1      ------------------------------------------------------------
                                                                                   

consensus_12318#2      ------------------------------------------------------------
consensus_12318#3      ------------------------------------------------------------
consensus_12318#0      AACATTTATGGGATGATTGTCTAGACTTCAATGCAATAGCTTCAATGGCTACTACTTTTT 360
consensus_12318#1      ------------------------------------------------------------
                                                                                   

consensus_12318#2      ------------------------------------------------------------
consensus_12318#3      ------------------------------------------------------------
consensus_12318#0      CTAACTATAACTGTAATAATAAACCAAAGGGTAAAGCCTCATACATCATCAAAAGATTAG 420
consensus_12318#1      ------------------------------------------------------------
                                                                                   

consensus_12318#2      --------------TTTTTTTTTTTTTTTTAGCATAATATACTTCACCAAACATGACCAA 46
consensus_12318#3      ------------------------------------------------------------
consensus_12318#0      ACACAAGTACTCAATTCCCTCCAAAATTTTAGCATAATATACTTCACCAAACATGACCAA 480
consensus_12318#1      --------------------------------ACCAGGAAACTGTCCATGTGATGCTTGA 28
                                                                                   

consensus_12318#2      CATAGGCTTAT-CATGAATTCATGATACTACATCAATGCTTATATGCAGAGAGAATGCAA 105
consensus_12318#3      -------------------------------------------------TTTTTTTTTTT 11
consensus_12318#0      CATAGGCTTAT-CATGAATTCATGATACTACATCAATGCTTATATGCAGAGAGAATGCAA 539
consensus_12318#1      CTTTGGGGTGCGTATGTATTCTATACACAACAAAACTGATCAGTTG--GTAATTTTGAAA 86
                                                                              *    

consensus_12318#2      GCATAGA-AAATACAGCAAGAAATTAAGATGCCAATAAACAGATATAAC--GTGCCCAAT 162
consensus_12318#3      TTTTTGA-AGATACAGCAAGAAATTAAGATGCCAATAAACAGATATAAC--GTGCCCAAT 68
consensus_12318#0      GCATAGA-AGATACAGCAAGAAATTAAGATGCCAATAAACAGATATAAC--GTGCCCAAT 596
consensus_12318#1      GGACAAAGAAATCCCCCAAAAGAATGAATTTCATGTAATCAAACAATATCAGCATTCTAT 146
                             * * ** *  *** * * * *  * *   *** ** * *  *   *    * **

consensus_12318#2      CCCGATA--TGAGCTTCCA--TGGTTGGTTGGCAAACAAAAGT--ACCAAAAAGAACATG 216
consensus_12318#3      CCCGATA--TGAGCTTCCA--TGGTTGGTTGGCAAACAAAAGT--ACCAAAAAGAACATG 122
consensus_12318#0      CCCGATA--TGAGCTTCCA--TGGTTGGTTGGCAAACAAAAGT--ACCAAAAAGAACATG 650
consensus_12318#1      ACCTATAACCGAAGTTCCAATTAGGAGTTTTAAATGCACAAATTAGTTTCTAAAAAGAAA 206
                        ** ***   **  *****  * *  * **   *  ** ** *        ** ** *  

consensus_12318#2      AGAATATACCCGTACTCCTACTAAACTGTTACCAAAGTCAAGAATTGAACTGTTACACTC 276
consensus_12318#3      AGAATATACCCGTACTCCTACTAAACTGTTACCAAAGTCAAGAATTGAACTGTTACACTC 182
consensus_12318#0      AGAATATACCCGTACTCCTACTAAACTGTTACCAAAGTCAAGAATTGAACTGTTACACTC 710
consensus_12318#1      ACAATGGACT-GTATGTTTGCCAGAGGTAGGACATATCTCAAAGTCCAG-TAAAAAGCAC 264
                       * ***  **  ***    * * * *       ** *    * * *  *  *   *  * *

consensus_12318#2      GTCTTGTTCCTCAGGTCTAG--CCTGGTCCTCTAGCAAACCCAGGTGCACCTTCACGTTG 334
consensus_12318#3      GTCTTGTTCCTCAGGTCTAG--CCTGGTCCTCTAGCAGACCCAGGTGCACCTTCACGTTG 240
consensus_12318#0      GTCTTGTTCCTCAGGTCTAG--CCTGGTCCTCTAGCAGACCCAGGTGCACCTTCACGTTG 768
consensus_12318#1      ACGTGGTTTC-CAGTTACAGTACCTGTTCTTCTGGTGGACCTCGCTGTTCAGCCA-GCTT 322
                          * *** * *** *  **  **** ** *** *   ***  * **  *   ** * * 

consensus_12318#2      GCTCATATGGGGCGCGAGCATCTCCATCACAGCTCTCATAGCGTCTGCAGCCTGCTCTGG 394
consensus_12318#3      GCTCATATGGGGCGCGAGCATCTCCATCACAGCTCTCATAGCGTCTGCAGCCTGCTCTGG 300
consensus_12318#0      GCTCATATGGGGCGCGAGCATCTCCATCACAGCTCTCATAGCGTCTGCAGCCTGCTCTGG 828
consensus_12318#1      CTTTTTGGTAACCTCGATATTCTGCCAGACA-TTTTCAT--TACTAGGATCAAGCTCGGA 379
                         *  *      * ***   *** *   ***  * ****       * * *  **** * 

consensus_12318#2      TCCTGCCAAGTTTATTTGGATGCCAGCATCCCTGTGCATGCCTGGTTGGCCATGCTCCCC 454
consensus_12318#3      NCCTGCCAAGTTTATTTGGATGCCAG-ATCCCTGTTGATGGCTGGTTGGGCATGGTCCCC 359
consensus_12318#0      TCCTGCCAAGTTTATTTGGATGCCAGCATCCCTGTGCATGCCTGGTTGGCCATGCTCCC- 887
consensus_12318#1      GGCTTTCAAATATCCCTTGTACAAAGCATCGTGGTATTTTCCCAAAGCAAAATAAGCAGA 439
                         **  *** * *   * *     ** ***   **   *  *         **   *   

consensus_12318#2      TTCATGTCCACTTGAAG-TTTGTTGTGGGCGATTTC--CTTCAGTAGAGCCCGTGAACGA 511
consensus_12318#3      TTCATGTTCACTTGAAG-GTTGTGGGGGGGGAATTC--CTTCAGTAAANGCCGTGAACGA 416
consensus_12318#0      TTCATGTCCACTTGAAG-TTTGTTGTGGGCGATTTC--CTTCAGTAGAGCCCGTGAACGA 944
consensus_12318#1      TCCAAGTCGGCTGTATGCTTTACTGTAGTTAGGGTCAATTTCAATTGACTTCAGGCAATC 499
                       * ** **   **  * *  **   *  *      **   **** *  *   *  * *   

consensus_12318#2      AAAAGGAGGAGGGACTGCAGTATTGGTTGGAAA-GAAGGAGGTGGNGTATGGTTACCTTG 570
consensus_12318#3      AAAAGG------------------------------------------------------ 422
consensus_12318#0      AAAAGGAGGAGGGACTGCAGTATTGGTTGGAAAAGAAGGAGGTGGGGTATGGTTAC-TTG 1003
consensus_12318#1      CTCAACAGCTTCATTGAACATATTAAGAAGGGTATATGCAGCAGCCCTGTTACAATAGTA 559
                          *                                                        

consensus_12318#2      AAGTCTCTGTCTGAGGTGTTCCCCCCTTGTCTCGTCCTCT-------------------- 610
consensus_12318#3      ------------------------------------------------------------
consensus_12318#0      AAGTCTCTGTCTGAGGTGTTCCTTGACTGTTCCCATTGACATTTGCATGATTAAAAATGT 1063
consensus_12318#1      AATAGCATTATTTCGGCTCAACGCAATAGCACAGGTGTACAGTTCTACAGCTTTAAG--- 616
                                                                                   

consensus_12318#2      ------------------------------------------------------------
consensus_12318#3      ------------------------------------------------------------
consensus_12318#0      CATTCAAATTTATATTTATGGAATGCTCAGATGATTGTTGACTGATATCAGACACACGGT 1123
consensus_12318#1      -ATGTTGTTTTGACCTCATGAATTCATTACCTTTTGACTTGAAGAATTCTGCAAGGTCTC 675
                                                                                   

consensus_12318#2      ------------------------------------------------------------
consensus_12318#3      ------------------------------------------------------------
consensus_12318#0      TGATGATATTGGGAAGAACTCAGGAGTTGGAGAATTTCCAGGAGGAAAAAACGT-GAATG 1182
consensus_12318#1      CTAAGCTTGCCCTTTTCCTTCCTGACTTCCGCATCCCCAGCAATGCATCATCGAAGAATT 735
                                                                                   

consensus_12318#2      ------------------------------------------------------------
consensus_12318#3      ------------------------------------------------------------
consensus_12318#0      GAACACCACTGCTTGATTGACCAGGAAACTGTCCATGTGATGCTTGACTATTGGGGTGCG 1242
consensus_12318#1      GTGTTGCTTTTGAAAGCTGGCCAGGATCTTCAGCTCCAGCAGATGATGTTTTAAAGAAAG 795
                                                                                   

consensus_12318#2      ------------------------------------------------------------
consensus_12318#3      ------------------------------------------------------------
consensus_12318#0      TATGTATTCTGTCTTCTGGTGGACCTCGATGTTCAGCCAGCTTCTTTTTGGTAACCTCGA 1302
consensus_12318#1      TGATT------------------------------------------------------- 800
                                                                                   

consensus_12318#2      ------------------------------------------------------------
consensus_12318#3      ------------------------------------------------------------
consensus_12318#0      TATTCTGCCAGACATTTTCATTACTAGGATCAAGCTCGGAGGCTTTCAAATATCCCTTGT 1362
consensus_12318#1      ------------------------------------------------------------
                                                                                   

consensus_12318#2      ----------------------------------
consensus_12318#3      ----------------------------------
consensus_12318#0      ACAAAGCATCGTGGTATTTTCCTCGTGCCGCTCG 1396
consensus_12318#1      ----------------------------------
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)