These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12321#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1638 fasta sequence [CGCAGGCGAGGGCGCGCGTTCCCCGCAATGGCGGCCACCTAGTCCCTCAAGGAATCCTCGTAAGTCGCATCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCGCGGCGGGCGGCAGCAATGGCGGATTACTCGCTCGGTCAGTTCTTGGCTCACCACCGTTGGTGTTCCCCTGTTTCTTGGTTCACGCCAGGCGCTTCTTCTTCTTCTTCTCGGATGCGAGAGCTTGCTGTGATTGCTGGCTAGCTAGCTTGCCGGAATGGAGGGCTTCTCGAGGGACTTGCTGTGCGGCATCGGCAAGGGAGGAGACGGGCCCCGCGGCGAGGTGAGGCCGCGCGTGGACATGGAGGCTGAGGAGGTGGAGCTCAACCTCGGGCTGTCGCTCGGCGGCCGGTTCGGGCTGGACAGGAGAGGGGAGAAGCTCGCCAGGTCGTCGTCGGTCGCGGCCATCTTGGCGGCGCCGACGGAGCCGTCGGCGCCGCCGTCCGGGCTCTTCAGGACGAGCTCGCTGCCGACCGTGGCCGCCGCGGAGGCGGCGAAAAAGCAGGGTGTGGATGAATTGAACTGTCGCCGCCCGAGCGGCGGCGCGGAGGCGGAGCCCGCGGCGGCGAGGCTGCCGGCGAGCGGGAGCCCGTCATCGGGCTCGTCGGACGGCGAAGGGCGCAGGCTTGAAGTGAATATGACAGACACTCTCATGAGAACAAGTTCACTCCCTGCCGGCATCGAGGATGAATGGAGGAAGCGAAAGGAGGCTCAGAGTCTGAAGCGACTCGAAGTGAAGAGGAAGAGAATTGAGAGGAGGAACTCTCTCACTTCCAACATTTCCAAAGAGGCTGTTGGGCAGATATTAGAGGAGATGAATGCAGGAGCTGAGAAAGTAGAAAGTTGCGATGATGTTGCTACAGGCAATAAGAAGACGGGAGGAAATGTGAACCATAGCAGTGATAGAAACCGCTGCACTGGACTTCCTCCAGTCCACCGTGCCACGTATACTCAACAACGTGGCAGTCTGTCCGGAATACCAACAAAGCATATTCCAGCTATGAAAGGATCTGCTGATGCCGAAGAGCACAACGTTCCATCGGCCGCTACTGAGCACCGAAATGGAGCAGCCATAGCAACACCGCCATTTTCGGCACTGGCGGTGAGGGCAGTAGCTCTTGCTTCCAGGGGAGAGCAGCTGCGTGCTACAGGAAGAGTTGCGGCAAGAGGGTTGAAGGCTTCCTGTACAAGTACAGGAAAGGCGAGGAGGTGAGGATTGTCTGTGTTTGCCATGGCAGCTTCCTGACCCCTGCTGAGTTTGTGAAGCACGCCGGAGGTGGAGATGTCGCGAACCCGCTTCGGCATATCGTCGTCAACCCTATCCCGCCATCCTTATACTGAACCTCTCTGTCAGCTCACTGCTGCTCTTGCAAGTGCTACTATAGCTTCAGTCAGCCCTTCACCTTAGCTTCAGAATTCAGTTCAGAGTAGAATCTGATTGTGAGACTTGTCTTAATGTTACAAGTGTTTATTATGCTAAGGAGACAGCGGGAGATTTGCTCCTGCTGACATAAAAAGTGGTTAACATGGCTCCATTGATCATTGTTAAATGGTTCCTGCAGCTGCTTTTGTTCAT] [+] EMBL AK068799 [CGCAGGCGAGGGCGCGCGTTCCCCGCAATGGCGGCCACCTAGTCCCTCAAGGAATCCTCGTAAGTCGCATCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCGCGGCGGGCGGCAGCAATGGCGGATTACTCGCTCGGTCAGTTCTTGGCTCACCACCGTTGGTGTTCCCCTGTTTCTTGGTTCACGCCAGGCGCTTCTTCTTCTTCTTCTCGGATGCGAGAGCTTGCTGTGATTGCTGGCTAGCTAGCTTGCCGGAATGGAGGGCTTCTCGAGGGACTTGCTGTGCGGCATCGGCAAGGGAGGAGACGGGCCCCGCGGCGAGGTGAGGCCGCGCGTGGACATGGAGGCTGAGGAGGTGGAGCTCAACCTCGGGCTGTCGCTCGGCGGCCGGTTCGGGCTGGACAGGAGAGGGGAGAAGCTCGCCAGGTCGTCGTCGGTCGCGGCCATCTTGGCGGCGCCGACGGAGCCGTCGGCGCCGCCGTCCGGGCTCTTCAGGACGAGCTCGCTGCCGACCGTGGCCGCCGCGGAGGCGGCGAAAAAGCAGGGTGTGGATGAATTGAACTGTCGCCGCCCGAGCGGCGGCGCGGAGGCGGAGCCCGCGGCGGCGAGGCTGCCGGCGAGCGGGAGCCCGTCATCGGGCTCGTCGGACGGCGAAGGGCGCAGGCTTGAAGTGAATATGACAGACACTCTCATGAGAACAAGTTCACTCCCTGCCGGCATCGAGGATGAATGGAGGAAGCGAAAGGAGGCTCAGAGTCTGAAGCGACTCGAAGTGAAGAGGAAGAGAATTGAGAGGAGGAACTCTCTCACTTCCAACATTTCCAAAGAGGCTGTTGGGCAGATATTAGAGGAGATGAATGCAGGAGCTGAGAAAGTAGAAAGTTGCGATGATGTTGCTACAGGCAATAAGAAGACGGGAGGAAATGTGAACCATAGCAGTGATAGAAACCGCTGCACTGGACTTCCTCCAGTCCACCGTGCCACGTATACTCAACAACGTGGCAGTCTGTCCGGAATACCAACAAAGCATATTCCAGCTATGAAAGGATCTGCTGATGCCGAAGAGCACAACGTTCCATCGGCCGCTACTGAGCACCGAAATGGAGCAGCCATAGCAACACCGCCATTTTCGGCACTGGCGGTGAGGGCAGTAGCTCTTGCTTCCAGGGGAGAGCAGCTGCGTGCTACAGGAAGAGTTGCGGCAAGAGGGTTGAAGGCTTCCTGTACAAGTACAGGAAAGGCGAGGAGGTGAGGATTGTCTGTGTTTGCCATGGCAGCTTCCTGACCCCTGCTGAGTTTGTGAAGCACGCCGGAGGTGGAGATGTCGCGAACCCGCTTCGGCATATCGTCGTCAACCCTATCCCGCCATCCTTATACTGAACCTCTCTGTCAGCTCACTGCTGCTCTTGCAAGTGCTACTATAGCTTCAGTCAGCCCTTCACCTTAGCTTCAGAATTCAGTTCAGAGTAGAATCTGATTGTGAGACTTGTCTTAATGTTACAAGTGTTTATTATGCTAAGGAGACAGCGGGAGATTTGCTCCTGCTGACATAAAAAGTGGTTAACATGGCTCCATTGATCATTGTTAAATGGTTCCTGCAGCTGCTTTTGTTCAT] consensusID : consensus_12321#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1545 fasta sequence [GCGCAGGCGAGGGCGCGCGTTCCCCGCAATGGCGGCCACCTAGTCCCTCAAGGAATCCTCGCG---CTTCTTCTTCTTCTTCTCGGATGCGAGAGCTTGCTGTGATTGCTGGCTAGCTAGCTTGCCGGAATGGAGGGCTTCTCGAGGGACTTGCTGTGCGGCATCGGCAAGGGAGGAGACGGGCCCCGCGGCGAGGTGAGGCCGCGCGTGGACATGGAGGCTGAGGAGGTGGAGCTCAACCTCGGGCTGTCGCTCGGCGGCCGGTTCGGGCTGGACAGGAGAGGGGAGAAGCTCGCCAGGTCGTCGTCGGTCGCGGCCATCTTGGCGGCGCCGACGGAGCCGTCGGCGCCGCCGTCCGGGCTCTTCAGGACGAGCTCGCTGCCGACCGTGGCCGCCGCGGAGGCGGCGAAAAAGCAGGGTGTGGATGAATTGAACTGTCGCCGCCCGAGCGGCGGCGCGGAGGCGGAGCCCGCGGCGGCGAGGCTGCCGGCGAGCGGGAGCCCGTCATCGGGCTCGTCGGACGGCGAAGGGCGCAGGCTTGAAGTGAATATGACAGACACTCTCATGAGAACAAGTTCACTCCCTGCCGGCATCGAGGATGAATGGAGGAAGCGAAAGGAGGCTCAGAGTCTGAAGCGACTCGAAGTGAAGAGGAAGAGAATTGAGAGGAGGAACTCTCTCACTTCCAACATTTCCAAAGAGGCTGTTGGGCAGATATTAGAGGAGATGAATGCAGGAGCTGAGAAAGTAGAAAGTTGCGATGATGTTGCTACAGGCAATAAGAAGACGGGAGGAAATGTGAACCATAGCAGTGATAGAAACCGCTGCACTGGACTTCCTCCAGTCCACCGTGCCACGTATACTCAACAACGTGGCAGTCTGTCCGGAATACCAACAAAGCATATTCCAGCTATGAAAGGATCTGCTGATGCCGAAGAGCACAACGTTCCATCGGCCGCTACTGAGCACCGAAATGGAGCAGCCATAGCAACACCGCCATTTTCGGCACTGGCGGTGAGGGCAGTAGCTCTTGCTTCCAGGGGAGAGCAGCTGCGTGCTACAGGAAGAGTTGCGGCAAGAGCCAAGAGCATGGGAGATGTGGAGAGGATCATGATGCAGGAGATGCCATGCGTGTGCACCAAGGGGCTCCCCAATGGCAAGAGGGTTGAAGGCTTCCTGTACAAGTACAGGAAAGGCGAGGAGGTGAGGATTGTCTGTGTTTGCCATGGCAGCTTCCTGACCCCTGCTGAGTTTGTGAAGCACGCCGGAGGTGGAGATGTCGCGAACCCGCTTCGGCATATCGTCGTCAACCCTATCCCGCCATCCTTATACTGAACCTCTCTGTCAGCTCACTGCTGCTCTTGCAAGTGTTACTATAGCTTCAGTCAGCCCTTCACCTTAGCTTCAGAATTCAGTTCAGAGTAGAATCTGATTGTGAGACTTGTCTTAATGTTACAAGTGTTTATTATGCTAAGGAGACAGCGGGAGATTTGCTCCTGCTGACATAAAAAGTGGTTAACATGGCTCCATTGATCATTGTTAAAAAAA] [+] EMBL AK100623 [GCGCAGGCGAGGGCGCGCGTTCCCCGCAATGGCGGCCACCTAGTCCCTCAAGGAATCCTCGCG CTTCTTCTTCTTCTTCTCGGATGCGAGAGCTTGCTGTGATTGCTGGCTAGCTAGCTTGCCGGAATGGAGGGCTTCTCGAGGGACTTGCTGTGCGGCATCGGCAAGGGAGGAGACGGGCCCCGCGGCGAGGTGAGGCCGCGCGTGGACATGGAGGCTGAGGAGGTGGAGCTCAACCTCGGGCTGTCGCTCGGCGGCCGGTTCGGGCTGGACAGGAGAGGGGAGAAGCTCGCCAGGTCGTCGTCGGTCGCGGCCATCTTGGCGGCGCCGACGGAGCCGTCGGCGCCGCCGTCCGGGCTCTTCAGGACGAGCTCGCTGCCGACCGTGGCCGCCGCGGAGGCGGCGAAAAAGCAGGGTGTGGATGAATTGAACTGTCGCCGCCCGAGCGGCGGCGCGGAGGCGGAGCCCGCGGCGGCGAGGCTGCCGGCGAGCGGGAGCCCGTCATCGGGCTCGTCGGACGGCGAAGGGCGCAGGCTTGAAGTGAATATGACAGACACTCTCATGAGAACAAGTTCACTCCCTGCCGGCATCGAGGATGAATGGAGGAAGCGAAAGGAGGCTCAGAGTCTGAAGCGACTCGAAGTGAAGAGGAAGAGAATTGAGAGGAGGAACTCTCTCACTTCCAACATTTCCAAAGAGGCTGTTGGGCAGATATTAGAGGAGATGAATGCAGGAGCTGAGAAAGTAGAAAGTTGCGATGATGTTGCTACAGGCAATAAGAAGACGGGAGGAAATGTGAACCATAGCAGTGATAGAAACCGCTGCACTGGACTTCCTCCAGTCCACCGTGCCACGTATACTCAACAACGTGGCAGTCTGTCCGGAATACCAACAAAGCATATTCCAGCTATGAAAGGATCTGCTGATGCCGAAGAGCACAACGTTCCATCGGCCGCTACTGAGCACCGAAATGGAGCAGCCATAGCAACACCGCCATTTTCGGCACTGGCGGTGAGGGCAGTAGCTCTTGCTTCCAGGGGAGAGCAGCTGCGTGCTACAGGAAGAGTTGCGGCAAGAGCCAAGAGCATGGGAGATGTGGAGAGGATCATGATGCAGGAGATGCCATGCGTGTGCACCAAGGGGCTCCCCAATGGCAAGAGGGTTGAAGGCTTCCTGTACAAGTACAGGAAAGGCGAGGAGGTGAGGATTGTCTGTGTTTGCCATGGCAGCTTCCTGACCCCTGCTGAGTTTGTGAAGCACGCCGGAGGTGGAGATGTCGCGAACCCGCTTCGGCATATCGTCGTCAACCCTATCCCGCCATCCTTATACTGAACCTCTCTGTCAGCTCACTGCTGCTCTTGCAAGTGTTACTATAGCTTCAGACAGCCCTTCACCTTAGCTTCAGAATTCAGTTCAGAGTAGAATCTGATTGTGAGACTTGTCTTAATGTTACAAGTGTTTATTATGCTAAGGAGACAGCGGGAGATTTGCTCCTGCTGACATAAAAAGTGGTTA ] [+] EMBL CB651890 [ GGAGGGCACCTAGNCCCTCAAGGAATCCTCGCGCTTCTTCTTCTTCTTCTTCTCCGATGCGAGAGCTTGCTGTGATTGCTGGCTAGCTAGCTTGCCGGAATGGAGGGCTTCTCGAGGGACTTGCTGTGCGGCATCGGCAAGGGAGGAGACGGGCCCCGCGGCGAGGTGAGGCCGCGCGTGGACATGGAGGCTGAGGAGGTGGAGCTCAACCTCGGGCTGTCGCTCGGCGGCCGGTTCGGGCTGGACAGGAGAGGGGAGAAGCTCGCCAGGTCGTCGTCGGTCGCGGCCATCTTGGCGGCGCCGACGGAGCCGTCTGCGCCACCGCCCGGGCTCTTCAGGACGAGCTCTCTGGCGACCGGGGCCGCCGCGGAGGCGGCGAAAAAGCAGGGTGTGGATGAATTGAACTGGCGCCGCCCGAGCGGCGGCGCCGGGGCGGAG ] [-] EMBL CB651891 [ GAATGCAGGAGCTGAGAAAGTAGAAAGTTGCGATGATGTTGCTACAGGCAATAAGAAGACGGGAGGAAATGTGAACCATAGCAGTGATAGAAACCGCTGCACTGGACTTCCTCCAGTCCACCGTGCCACGTATACTCAACAACGTGGCAGTCTGTCCGGAATACCAACAAAGCATATTCCAGCTATGAAAGGATCTGCTGATGCCGAAGAGCACAACGTTCCATCGGCCGCTACTGAGCACCGAAATGGAGCAGCCATAGCAACACCGCCATTTTCGGCACTGGCGGTGAGGGCAGTAGCTCTTGCTTCCAGGGGAGAGCAGCTGCGTGCTACAGGAAGAGTTGCGGCAAGAGCCAAGAGCATGGGAGATGTGGAGAGGATCATGATGCAGGAGATGCCATGCGTGTGCACCAAGGGGCTCCCCAATGGCAAGAGGGTTGAAGGCTTCCTGTACAAGTACAGGAAAGGCGAGGAGGTGAGGATTGTCTGTGTTTGCCATGGCAGCTTCCTGACCCCTGCTGAGTTTGTGAAGCACGCCGGAGGTGGAGATGTCGCGAACCCGCTTCGGCATATCGTCGTCAACCCTATCCCGCCATCCTTATACTGAACCTCTCTGTCAGCTCACTGCTGCTCTTGCAAGTGTTACTATAGCTTCAGTCAGCCCTTCACCTTAGCTTCAGAATTCAGTTCAGAGTAGAATCTGATTGTGAGACTTGTCTTAATGTTACAAGTGTTTATTATGCTAAGGAGTCAAAGGGGGATTTGCTCCTG ] [-] EMBL CB654602 [ TTGCTTCAGGCAATAAGAAGACGGGAGGAAATGTGAACCATAGCAGTGATAGAAACCGCTGCACTGGACTTCCTCCAGTCCACCGTGCCACGTATACTCAACAACGTGGCAGTCTGTCCGGAATACCAACAAAGCATATTCCAGCTATGAAAGGATCTGCTGATGCCGAAGAGCACAACGTTCCATCGGCCGCTACTGAGCACCGAAATGGAGCAGCCATAGCAACACCGCCATTTTCGGCACTGGCGGTGAGGGCAGTAGCTCTTGCTTCCAGGGGAGAGCAGCTGCGTGCTACAGGAAGAGTTGCGGCAAGAGCCAAGAGCATGGGAGATGTGGAGAGGATCATGATGCAGGAGATGCCATGCGTGTGCACCAAGGGGCTCCCCAATGGCAAGAGGGTTGAAGGCTTCCTGTACAAGTACAGGAAAGGCGAGGAGGTGAGGATTGTCTGTGTTTGCCATGGCAGCTTCCTGACCCCTGCTGAGTTTGTGAAGCACGCCGGAGGTGGAGATGTCGCGAACCCGCTTCGGCATATCGTCGTCAACCCTATCCCGCCATCCTTATACTGAACCTCTCTGTCAGCTCACTGCTGCTCTTGCAAGTGTTACTATAGCTTCAGTCAGCCCTTCACCTTAGCTTCAGAATTCAGTTCAGAGTAGAATCTGATTGTGAGACTTGTCTTAATGTTACAAGTGTTTATTATGCTAAGGAGACAAAGGGAGATTTGCTCCTGCT ] [-] EMBL CF317911 [ CATAGCAACACCGCCATTTTCGGCACTGGCGGTGAGGGCAGTAGCTCTTGCTTCCAGGGGAGAGCAGCTGCGTGCTACAGGAAGAGTTGCGGCAAGAGCCAAGAGCATGGGAGATGTGGAGAGGATCATGATGCAGGAGATGCCATGCGTGTGCACCAAGGGGCTCCCCAATGGCAAGAGGGTTGAAGGCTTCCTGTACAAGTACAGGAAAGGCGAGGAGGTGAGGATTGTCTGTGTTTGCCATGGCAGCTTCCTGACCCCTGCTGAGTTTGTGAAGCACGCCGGAGGTGGAGATGTCGCGAACCCGCTTCGGCATATCGTCGTCAACCCTATCCCGCCATCCTTATACTGAACCTCTCTGTCAGCTCACTGCTGCTCTTGCAAGTGTTACTATAGCTTCAGTCAGCCCTTCACCTTAGCTTCAGAATTCAGTTCAGAGTAGAATGTGATTGTGAGACTTGTCTTAATGTTACAAGTGTTTATTATGCTAAGGAGACAGCGGGAGATTTGCTCCTGCTGACATAAAAAa ] [-] EMBL CF312581 [ CTGGCGGTGAGGGCAGTAGCTCTTGCTTCCAGGGGAGAGCAGCTGCGTGCTACAGGAAGAGTTGCGGCAAGAGCCAAGAGCATGGGAGATGTGGAGAGGATCATGATGCAGGAGATGCCATGCGTGTGCACCAAGGGGCTCCCCAATGGCAAGAGGGTTGAAGGCTTCCTGTACAAGTACAGGAAAGGCGAGGAGGTGAGGATTGTCTGTGTTTGCCATGGCAGCTTCCTGACCCCTGCTGAGTTTGTGAAGCACGCCGGAGGTGGAGATGTCGCGAACCCGCTTCGGCATATCGTCGTCAACCCTATCCCGCCATCCTTATACTGAACCTCTCTGTCAGCTCACTGCTGCTCTTGCAAGTGTTACTATAGCCTCAGTCAGCCCTTCACCTTAGCTTCAGAATTCAGTTCAGAGTAGAATCTGATTGTGAGACTTGTCTTAATGTTACAAGTGTTTATTATGCTAAGGAGACAGCGGGAGATTTGCTCCTGCTGACATAAAAAGTGGTTAACATGGCTCCATTGATCATTGTTAAAAAAA] [+] EMBL AU181980 [ GTGGAGAGGATCATGATGCAGGAGATGCCATGCGTGTGCACCAAGGGGCTCCCCAATGGCAAGAGGGTTGAAGGCTTCCTGTACAAGTACAGGAAAGGCGAGGAGGTGAGGATTGTCTGTGTTTGCCATGGCAGCTTCCTGACCCCTGCTGAGTTTGTGAAGCACGCCGGAGGTGGAGATGTCGCGAACCCGCTTCGGCATATCGTCGTCAACCCTATCCCGCCATCCTTATACTGAACCTCTCTGTCAGCTCACTGCTGCTCTTGCAAGTGTTACTATAGCTTCAGTCAGCCCTTCACCTTAGCTTCAGAATTCAGTTCAGAGTAGAATCTGATTGTGAGACTTGTCTTAATGTTACAAGTGTTTATTATGCTAAGGAGACAGCGGGAGATTTGCTCCTGCTGACATAAAAAGTGGTTAACATGGCTCCAaaaaaaaaa ] consensusID : consensus_12321#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [TTTTTCCTTCCTCTCTCTCTTCTCCTCCTCCTCCCTTCCCATCTCCGCCGCGGAGAGGCGCAGGCGAGGGCGCGCGTTCCCCGCAATGGCGGCCACCTAGTCCCTCAAGGAATCCTCTGAATATGACAGACACTCTCATGAGAACAAGTTCACTCCCTGCCGGCATCGAGGATGAATGGAGGAAGCGAAAGGAGGCTCAGAGTCTGAAGCGACTCGAAGTGAAGAGGAAGAGAATTGAGAGGAGGAACTCTCTCACTTCCAACATTTCCAAAGAGGCTGTTGGGCAGATATTAGAGGAGATGAATGCAGGAGCTGAGAAAGTAGAAAGTTGCGATGATGTTGCTACAGGCAATAAGAAGACGGGAGGAAATGTGAACCATAGCAGTGATAGAAACCGCTGCACTGGACTTCCTCCAGTCCACCGTGCCACGTATACTCAACACGTTGGCAGTCTGTCCGGAATACCAACAAAGCATATTCCAGCTATGAAAGGATCTGCTGATGCCGAAGATCACAACGTTCCATCGGCCGCTACTGAGCACCGAAATGGAGCAGCCATAGCA] [+] EMBL CF337366 [TTTTTCCTTCCTCTCTCTCTTCTCCTCCTCCTCCCTTCCCATCTCCGCCGCGGAGAGGCGCAGGCGAGGGCGCGCGTTCCCCGCAATGGCGGCCACCTAGTCCCTCAAGGAATCCTCTGAATATGACAGACACTCTCATGAGAACAAGTTCACTCCCTGCCGGCATCGAGGATGAATGGAGGAAGCGAAAGGAGGCTCAGAGTCTGAAGCGACTCGAAGTGAAGAGGAAGAGAATTGAGAGGAGGAACTCTCTCACTTCCAACATTTCCAAAGAGGCTGTTGGGCAGATATTAGAGGAGATGAATGCAGGAGCTGAGAAAGTAGAAAGTTGCGATGATGTTGCTACAGGCAATAAGAAGACGGGAGGAAATGTGAACCATAGCAGTGATAGAAACCGCTGCACTGGACTTCCTCCAGTCCACCGTGCCACGTATACTCAACACGTTGGCAGTCTGTCCGGAATACCAACAAAGCATATTCCAGCTATGAAAGGATCTGCTGATGCCGAAGATCACAACGTTCCATCGGCCGCTACTGAGCACCGAAATGGAGCAGCCATAGCA] consensusID : consensus_12321#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [TGACTGGACTGAAGGAGTAGAAATCTCATGAGAACAAGTTCACTCCCTGCCGGCATCGAGGATGAATGGAGGAAGCGAAAGGAGGCTCAGAGTCTGAAGCGACTCGAAGTGAAGAGGAAGAGAATTGAGAGGAGGAACTCTCTCACTTCCAACATTTCCAAAGAGGCTGTTGGGCAGATATTAGAGGAGATGAATGCAGGAGCTGAGAAAGTAGAAAGTTGCGATGATGTTGCTACAGGCAATAAGAAGACGGGAGGAAATGTGAACCATAGCAGTGATAGAAACCGCTGCACTGGACTTCCTCCAGTCCACCGTGCCACGTATACTCAACAACGTGGCAGTCTGTCCGGAATACCAACAAAGCATATTCCAGCTATGAAAGGATCTGCTGATGCCGAAGAGCACAACGTTCCATCGGCCGCTACTGAGCACCGAAATGGAGCAGCCATAGCAACACCGCCATTTTCG] [+] EMBL CF312580 [TGACTGGACTGAAGGAGTAGAAATCTCATGAGAACAAGTTCACTCCCTGCCGGCATCGAGGATGAATGGAGGAAGCGAAAGGAGGCTCAGAGTCTGAAGCGACTCGAAGTGAAGAGGAAGAGAATTGAGAGGAGGAACTCTCTCACTTCCAACATTTCCAAAGAGGCTGTTGGGCAGATATTAGAGGAGATGAATGCAGGAGCTGAGAAAGTAGAAAGTTGCGATGATGTTGCTACAGGCAATAAGAAGACGGGAGGAAATGTGAACCATAGCAGTGATAGAAACCGCTGCACTGGACTTCCTCCAGTCCACCGTGCCACGTATACTCAACAACGTGGCAGTCTGTCCGGAATACCAACAAAGCATATTCCAGCTATGAAAGGATCTGCTGATGCCGAAGAGCACAACGTTCCATCGGCCGCTACTGAGCACCGAAATGGAGCAGCCATAGCAACACCGCCATTTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12321#0 CGCAGGCGAGGGCGCGCGTTCCCCGCAATGGCGGCCACCTAGTCCCTCAAGGAATCCTCG 60 consensus_12321#1 ------------------------------------------------------------ consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 TAAGTCGCATCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 120 consensus_12321#1 ------------------------------------------------------------ consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 CGCCGCGGCGGGCGGCAGCAATGGCGGATTACTCGCTCGGTC-AGTTCTTGGCTCACCAC 179 consensus_12321#1 ----------------------------------GCGCAGGCGAGGGCGCGCGTTCCCCG 26 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 CGTTGGTGTTCCCCTGTTTCTTGGTTCACGCCAGGCGCTTCTTCTTCTTCTTCTCGGATG 239 consensus_12321#1 CAATGGCGGCCACCTAGTCCCTCAAGGAATCCTCGCGCTTCTTCTTCTTCTTCTCGGATG 86 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 CGAGAGCTTGCTGTGATTGCTGGCTAGCTAGCTTGCCGGAATGGAGGGCTTCTCGAGGGA 299 consensus_12321#1 CGAGAGCTTGCTGTGATTGCTGGCTAGCTAGCTTGCCGGAATGGAGGGCTTCTCGAGGGA 146 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 CTTGCTGTGCGGCATCGGCAAGGGAGGAGACGGGCCCCGCGGCGAGGTGAGGCCGCGCGT 359 consensus_12321#1 CTTGCTGTGCGGCATCGGCAAGGGAGGAGACGGGCCCCGCGGCGAGGTGAGGCCGCGCGT 206 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 GGACATGGAGGCTGAGGAGGTGGAGCTCAACCTCGGGCTGTCGCTCGGCGGCCGGTTCGG 419 consensus_12321#1 GGACATGGAGGCTGAGGAGGTGGAGCTCAACCTCGGGCTGTCGCTCGGCGGCCGGTTCGG 266 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 GCTGGACAGGAGAGGGGAGAAGCTCGCCAGGTCGTCGTCGGTCGCGGCCATCTTGGCGGC 479 consensus_12321#1 GCTGGACAGGAGAGGGGAGAAGCTCGCCAGGTCGTCGTCGGTCGCGGCCATCTTGGCGGC 326 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 GCCGACGGAGCCGTCGGCGCCGCCGTCCGGGCTCTTCAGGACGAGCTCGCTGCCGACCGT 539 consensus_12321#1 GCCGACGGAGCCGTCGGCGCCGCCGTCCGGGCTCTTCAGGACGAGCTCGCTGCCGACCGT 386 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 GGCCGCCGCGGAGGCGGCGAAAAAGCAGGGTGTGGATGAATTGAACTGTCGCCGCCCGAG 599 consensus_12321#1 GGCCGCCGCGGAGGCGGCGAAAAAGCAGGGTGTGGATGAATTGAACTGTCGCCGCCCGAG 446 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------TTTTTCCTTCCTCTCTCTCTTCTC 24 consensus_12321#0 CGGCGGCGCGGAGGCGGAGCCCGCGGCGGCGAGGCTGCCGGCGAGCGGGAGCCCGTCATC 659 consensus_12321#1 CGGCGGCGCGGAGGCGGAGCCCGCGGCGGCGAGGCTGCCGGCGAGCGGGAGCCCGTCATC 506 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 CTCCTCCTCCCTTCCCATCTCCGCCGCGGAGAGGC-GCAGGCGAG--GGCGCGCGTTCCC 81 consensus_12321#0 GGGCTCGTCGGACGGCGAAGGGCGCA-GGCTTGAAGTGAATATGACAGACACTCTCATGA 718 consensus_12321#1 GGGCTCGTCGGACGGCGAAGGGCGCA-GGCTTGAAGTGAATATGACAGACACTCTCATGA 565 consensus_12321#3 ---------------------------TGACTGGACTGAAGG-AGTAGA-AATCTCATGA 31 consensus_12321#2 CGCAATGGCGGCCACCTAGTCCCTCAAGGAATCCTCTGAATATGACAGACACTCTCATGA 141 * * **** *** * ******** consensus_12321#0 GAACAAGTTCACTCCCTGCCGGCATCGAGGATGAATGGAGGAAGCGAAAGGAGGCTCAGA 778 consensus_12321#1 GAACAAGTTCACTCCCTGCCGGCATCGAGGATGAATGGAGGAAGCGAAAGGAGGCTCAGA 625 consensus_12321#3 GAACAAGTTCACTCCCTGCCGGCATCGAGGATGAATGGAGGAAGCGAAAGGAGGCTCAGA 91 consensus_12321#2 GAACAAGTTCACTCCCTGCCGGCATCGAGGATGAATGGAGGAAGCGAAAGGAGGCTCAGA 201 ************************************************************ consensus_12321#0 GTCTGAAGCGACTCGAAGTGAAGAGGAAGAGAATTGAGAGGAGGAACTCTCTCACTTCCA 838 consensus_12321#1 GTCTGAAGCGACTCGAAGTGAAGAGGAAGAGAATTGAGAGGAGGAACTCTCTCACTTCCA 685 consensus_12321#3 GTCTGAAGCGACTCGAAGTGAAGAGGAAGAGAATTGAGAGGAGGAACTCTCTCACTTCCA 151 consensus_12321#2 GTCTGAAGCGACTCGAAGTGAAGAGGAAGAGAATTGAGAGGAGGAACTCTCTCACTTCCA 261 ************************************************************ consensus_12321#0 ACATTTCCAAAGAGGCTGTTGGGCAGATATTAGAGGAGATGAATGCAGGAGCTGAGAAAG 898 consensus_12321#1 ACATTTCCAAAGAGGCTGTTGGGCAGATATTAGAGGAGATGAATGCAGGAGCTGAGAAAG 745 consensus_12321#3 ACATTTCCAAAGAGGCTGTTGGGCAGATATTAGAGGAGATGAATGCAGGAGCTGAGAAAG 211 consensus_12321#2 ACATTTCCAAAGAGGCTGTTGGGCAGATATTAGAGGAGATGAATGCAGGAGCTGAGAAAG 321 ************************************************************ consensus_12321#0 TAGAAAGTTGCGATGATGTTGCTACAGGCAATAAGAAGACGGGAGGAAATGTGAACCATA 958 consensus_12321#1 TAGAAAGTTGCGATGATGTTGCTACAGGCAATAAGAAGACGGGAGGAAATGTGAACCATA 805 consensus_12321#3 TAGAAAGTTGCGATGATGTTGCTACAGGCAATAAGAAGACGGGAGGAAATGTGAACCATA 271 consensus_12321#2 TAGAAAGTTGCGATGATGTTGCTACAGGCAATAAGAAGACGGGAGGAAATGTGAACCATA 381 ************************************************************ consensus_12321#0 GCAGTGATAGAAACCGCTGCACTGGACTTCCTCCAGTCCACCGTGCCACGTATACTCAAC 1018 consensus_12321#1 GCAGTGATAGAAACCGCTGCACTGGACTTCCTCCAGTCCACCGTGCCACGTATACTCAAC 865 consensus_12321#3 GCAGTGATAGAAACCGCTGCACTGGACTTCCTCCAGTCCACCGTGCCACGTATACTCAAC 331 consensus_12321#2 GCAGTGATAGAAACCGCTGCACTGGACTTCCTCCAGTCCACCGTGCCACGTATACTCAAC 441 ************************************************************ consensus_12321#0 AACGTGGCAGTCTGTCCGGAATACCAACAAAGCATATTCCAGCTATGAAAGGATCTGCTG 1078 consensus_12321#1 AACGTGGCAGTCTGTCCGGAATACCAACAAAGCATATTCCAGCTATGAAAGGATCTGCTG 925 consensus_12321#3 AACGTGGCAGTCTGTCCGGAATACCAACAAAGCATATTCCAGCTATGAAAGGATCTGCTG 391 consensus_12321#2 ACGTTGGCAGTCTGTCCGGAATACCAACAAAGCATATTCCAGCTATGAAAGGATCTGCTG 501 * ******************************************************** consensus_12321#0 ATGCCGAAGAGCACAACGTTCCATCGGCCGCTACTGAGCACCGAAATGGAGCAGCCATAG 1138 consensus_12321#1 ATGCCGAAGAGCACAACGTTCCATCGGCCGCTACTGAGCACCGAAATGGAGCAGCCATAG 985 consensus_12321#3 ATGCCGAAGAGCACAACGTTCCATCGGCCGCTACTGAGCACCGAAATGGAGCAGCCATAG 451 consensus_12321#2 ATGCCGAAGATCACAACGTTCCATCGGCCGCTACTGAGCACCGAAATGGAGCAGCCATAG 561 ********** ************************************************* consensus_12321#0 CAACACCGCCATTTTCGGCACTGGCGGTGAGGGCAGTAGCTCTTGCTTCCAGGGGAGAGC 1198 consensus_12321#1 CAACACCGCCATTTTCGGCACTGGCGGTGAGGGCAGTAGCTCTTGCTTCCAGGGGAGAGC 1045 consensus_12321#3 CAACACCGCCATTTTCG------------------------------------------- 468 consensus_12321#2 CA---------------------------------------------------------- 563 ** consensus_12321#0 AGCTGCGTGCTACAGGAAGAGTTGCGGCAAGAG--------------------------- 1231 consensus_12321#1 AGCTGCGTGCTACAGGAAGAGTTGCGGCAAGAGCCAAGAGCATGGGAGATGTGGAGAGGA 1105 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 -------------------------------------------------------GGTTG 1236 consensus_12321#1 TCATGATGCAGGAGATGCCATGCGTGTGCACCAAGGGGCTCCCCAATGGCAAGAGGGTTG 1165 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 AAGGCTTCCTGTACAAGTACAGGAAAGGCGAGGAGGTGAGGATTGTCTGTGTTTGCCATG 1296 consensus_12321#1 AAGGCTTCCTGTACAAGTACAGGAAAGGCGAGGAGGTGAGGATTGTCTGTGTTTGCCATG 1225 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 GCAGCTTCCTGACCCCTGCTGAGTTTGTGAAGCACGCCGGAGGTGGAGATGTCGCGAACC 1356 consensus_12321#1 GCAGCTTCCTGACCCCTGCTGAGTTTGTGAAGCACGCCGGAGGTGGAGATGTCGCGAACC 1285 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 CGCTTCGGCATATCGTCGTCAACCCTATCCCGCCATCCTTATACTGAACCTCTCTGTCAG 1416 consensus_12321#1 CGCTTCGGCATATCGTCGTCAACCCTATCCCGCCATCCTTATACTGAACCTCTCTGTCAG 1345 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 CTCACTGCTGCTCTTGCAAGTGCTACTATAGCTTCAGTCAGCCCTTCACCTTAGCTTCAG 1476 consensus_12321#1 CTCACTGCTGCTCTTGCAAGTGTTACTATAGCTTCAGTCAGCCCTTCACCTTAGCTTCAG 1405 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 AATTCAGTTCAGAGTAGAATCTGATTGTGAGACTTGTCTTAATGTTACAAGTGTTTATTA 1536 consensus_12321#1 AATTCAGTTCAGAGTAGAATCTGATTGTGAGACTTGTCTTAATGTTACAAGTGTTTATTA 1465 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 TGCTAAGGAGACAGCGGGAGATTTGCTCCTGCTGACATAAAAAGTGGTTAACATGGCTCC 1596 consensus_12321#1 TGCTAAGGAGACAGCGGGAGATTTGCTCCTGCTGACATAAAAAGTGGTTAACATGGCTCC 1525 consensus_12321#3 ------------------------------------------------------------ consensus_12321#2 ------------------------------------------------------------ consensus_12321#0 ATTGATCATTGTTAAATGGTTCCTGCAGCTGCTTTTGTTCAT 1638 consensus_12321#1 ATTGATCATTGTTAAAAAAA---------------------- 1545 consensus_12321#3 ------------------------------------------ consensus_12321#2 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||