These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2260 fasta sequence [ACACCACCAATCCCTAGCAGCAGCAGCAGCGGCGGCGGCGGGGGATCCAGCATGGAGCCAGCCCGACGATCCACCGCCGCGTCGGACGGCGGCGGCGGCTCGTCGGCGGCCGGATCGGACGGCGAGGACGACAGGTACCTCAGCGCCAGCTCCGCGCTCGGCACGCCCAGCTCCCTCGCCACCCTCCTCCCCTCCTCCGACCTCTGGGATCACCAGATGGACCTCCTCCTCCTCGACGACCCCGTCGCCGGCTTCCCCAAGGCCCACCAGCTGACCCGCCTCCATCCGCCGCCGGAGCCGCCGCGGCCCGATCCTCCCGCCCCCGCCGCGGCCGGCGACGCCGTTCTCCCGCGGCCGCCGGAGCCGGATCCCACCCAGGTGGACAACCTTGATGACAATCATTTATTTGATGATATGGTTCAAGAGATGGAACATATTCTTCTCAATTCAGGGGAGCCCCATGAAAGTGCATCTTTTACAGATTATCGCGCAAATAATTCTTCCCAAGCTCATCATTTCAGAGATGGAAGCACCACTGCCTCTACTTCTGGTACAGATGATGCTTATGTATATCCCCTTCCTCACCATCCTTCAAAAATTGATTGGGTGGAGGTTGTGGGAGCAAAGCAAAGAACAGGAGATGTTTCTTTTGGTGAGCGAATGGTTGGGGTCAGAGAATATACTGTTTATTTGTTAAAAGTCAAGAGCGGAGAAGATGACTGGGAAATTGAGAGGCGGTACCGTGAATTTTATGCTCTATACCAACAACTCAAGCTCTTGTTTGCTGAGAAAGGTTTCAGTCTGCCTCCTGCATGGAGAAACGTTGAAAAAGAATCAAGTAAATTATTTGGGAATGCATCCCCAGACATCGTCAATGAGAGAAGTAGTCTAATTCAAGACTGTTTGTGTTCTTTGCTTGTCTCTAGTTATCCATTTGGAACACCCACTCCTCTGGTTAGTTTTTTGTCACCAGGGAGTCCTGCTTATGAGTATAGCTTGTTAAAAACTCTTATCCCAAGATCTTTGCAAAGGCTAAGCAGTGATTCACATTCCAAAGGCTCAAGCTGCAATGGAACTTCACACAAAGATTCTGCCTCAATGGGCAAGACTATATCACTTGTTGTGGAGGATAGGCCTCGGAAGTCCACTAGACAGTTGTTGGAGTTACAACACTACAATTGTGCTGGATGCCATAGGCATTTGGATGCTGGGCGAACAATGCTGCAAGAAATTGTCCAAACAATCGGATGGAACAAGCCTCGGTTTTGTGCTTACACTGGCCAATTGTTTTGTGCTTCTTGTCACACAAATGATACTGCAGTTCTGCCAGCAAAAGTGCTACACCACTGGGATTTCTCTTTATATCCTATTTCCCAGTTAGCAAAAGCATATTTGGATTCCATCTATGACCAGCCTATGCTCTGTGTAAGTGCTGTCAATCCTTTCCTCTTTGCAAAGGTGCCAGCTCTGCTTAATATTATGAGTATTCGGAAGAAAATAGCAGCTATGCTTCCATGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGAGCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTTTCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTTTTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAGGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGGTTC-TTTGCCAGATACGTCTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTGCATAAAA------AAAAAAAAAAAAAAA] [+] EMBL AK099741 [ACACCACCAATCCCTAGCAGCAGCAGCAGCGGCGGCGGCGGGGGATCCAGCATGGAGCCAGCCCGACGATCCACCGCCGCGTCGGACGGCGGCGGCGGCTCGTCGGCGGCCGGATCGGACGGCGAGGACGACAGGTACCTCAGCGCCAGCTCCGCGCTCGGCACGCCCAGCTCCCTCGCCACCCTCCTCCCCTCCTCCGACCTCTGGGATCACCAGATGGACCTCCTCCTCCTCGACGACCCCGTCGCCGGCTTCCCCAAGGCCCACCAGCTGGCCCGCCTCCATCCGCCGCCGGAGCCGCCGCGGCCCGATCCTCCCGCCCCCGCCGCGGCCGGCGACGCCGTTCTCCCGCGGCCGCCGGAGCCGGATCCCACCCAGGTGGACAACCTTGATGACAATCATTTATTTGATGATATGGTTCAAGAGATGGAACATATTCTTCTCAATTCAGGGGAGCCCCATGAAAGTGCATCTTTTACAGATTATCGCGCAAATAATTCTTCCCAAGCTCATCATTTCAGAGATGGAAGCACCACTGCCTCTACTTCTGGTACAGATGATGCTTATGTATATCCCCTTCCTCACCATCCTTCAAAAATTTATTGGGTGGAGGTTGTGGGAGCAAAGCAAAGAACAGGAGATGTTTCTTTTGGTGAGCGAATGGTTGGGGTCAGAAAATATACTGTTTATTTGTTAAAAGTCAAGAGCGGAGAAGATGACTGGGAAATTGAGAGGCGGTACCGTGAATTTTATGCTCTATACCAACAACTCAAGCTCTTGTTTGCTGAGAAAGGTTTCAGTCTGCCTCCTGCATGGAGAAACGTTGAAAAAGAATCAAGTAAATTATTTGGGAATGCATCCCCAGACATCGTCAATGAGAGAAGTAGTCTAATTCAAGACTGTTTGTGTTCTTTGCTTGTCTCTAGTTATCCATTTGGAACACCCACTCCTCTGGTTAGTTTTTTGTCACCAGGGAGTCCTGCTTATGAGTATAGCTTGTTAAAAACTCTTATCCCAAGATCTTTGCAAAGGCTAAGCAGTGATTCACATTCCAAAGGCTCAAGCTGCAATGGAACTTCACACAAAGATTCTGCCTCAATGGGCAAGACTATATCACTTGTTGTGGAGGATAGGCCTCGGAAGTCCACTAGACAGTTGTTGGAGTTACAACACTACAATTGTGCTGGATGCCATAGGCATTTGGATGCTGGGCGAACAATGCTGCAAGAAATTGTCCAAACAATCGGATGGAACAAGCCTCGGTTTTGTGCTTACACTGGCCAATTGTTTTGTGCTTCTTGTCACACAAATGATACTGCAGTTCTGCCAGCAAAAGTGCTACACCACTGGGATTTCTCTTTATATCCTATTTCCCAGTTAGCAAAAGCATATTTGGATTCCATCTATGACCAGCCTATGCTCTGTGTAAGTGCTGTCAATCCTTTCCTCTTTGCAAAGGTGCCAGCTCTGCTTAATATTATGAGTATTCGGAAGAAAATAGCAGCTATGCTTCCATGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGAGCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTTTCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTTTTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAGGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGGTTC TTTGCCAGATACGTCTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTG ] [+] EMBL AK070641 [ CAGCGGCGGCGGCGGGGGATCCAGCATGGAGCCAGCCCGACGATCCACCGCCGCGTCGGACGGCGGCGGCGGCTCGTCGGCGGCCGGATCGGACGGCGAGGACGACAGGTACCTCAGCGCCAGCTCCGCGCTCGGCACGCCCAGCTCCCTCGCCACCCTCCTCCCCTCCTCCGACCTCTGGGATCACCAGATGGACCTCCTCCTCCTCGACGACCCCGTCGCCGGCTTCCCCAAGGCCCACCAGCTGACCCGCCTCCATCCGCCGCCGGAGCCGCCGCGGCCCGATCCTCCCGCCCCCGCCGCGGCCGGCGACGCCGTTCTCCCGCGGCCGCCGGAGCCGGATCCCACCCAGGTGGACAACCTTGATGACAATCATTTATTTGATGATATGGTTCAAGAGATGGAACATATTCTTCTCAATTCAGGGGAGCCCCATGAAAGTGCATCTTTTACAGATTATCGCGCAAATAATTCTTCCCAAGCTCATCATTTCAGAGATGGAAGCACCACTGCCTCTACTTCTGGTACAGATGATGCTTATGTATATCCCCTTCCTCACCATCCTTCAAAAATTGATTGGGTGGAGGTTGTGGGAGCAAAGCAAAGAACAGGAGATGTTTCTTTTGGTGAGCGAATGGTTGGGGTCAGAGAATATACTGTTTATTTGTTAAAAGTCAAGAGCGGAGAAGATGACTGGGAAATTGAGAGGCGGTACCGTGAATTTTATGCTCTATACCAACAACTCAAGCTCTTGTTTGCTGAGAAAGGTTTCAGTCTGCCTCCTGCATGGAGAAACGTTGAAAAAGAATCAAGTAAATTATTTGGGAATGCATCCCCAGACATCGTCAATGAGAGAAGTAGTCTAATTCAAGACTGTTTGTGTTCTTTGCTTGTCTCTAGTTATCCATTTGGAACACCCACTCCTCTGGTTAGTTTTTTGTCACCAGGGAGTCCTGCTTATGAGTATAGCTTGTTAAAAACTCTTATCCCAAGATCTTTGCAAAGGCTAAGCAGTGATTCACATTCCAAAGGCTCAAGCTGCAATGGAACTTCACACAAAGATTCTGCCTCAATGGGCAAGACTATATCACTTGTTGTGGAGGATAGGCCTCGGAAGTCCACTAGACAGTTGTTGGAGTTACAACACTACAATTGTGCTGGATGCCATAGGCATTTGGATGCTGGGCGAACAATGCTGCAAGAAATTGTCCAAACAATCGGATGGAACAAGCCTCGGTTTTGTGCTTACACTGGCCAATTGTTTTGTGCTTCTTGTCACACAAATGATACTGCAGTTCTGCCAGCAAAAGTGCTACACCACTGGGATTTCTCTTTATATCCTATTTCCCAGTTAGCAAAAGCATATTTGGATTCCATCTATGACCAGCCTATGCTCTGTGTAAGTGCTGTCAATCCTTTCCTCTTTGCAAAGGTGCCAGCTCTGCTTAATATTATGAGTATTCGGAAGAAAATAGCAGCTATGCTTCCATGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGAGCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTTTCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTTTTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAGGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGGTTC TTTGCCAGATACGTCTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTGCAT ] [+] EMBL CB668209 [ GGGGGATCCAGCATGGAGCCAGCCCGACGATCCACCGCCGCGTCGGACGGCGGCGGCGGCTCGTCGGCGGCCGGATCGGACGGCGAGGACGACAGGTACCTCAGCGCCAGCTCCGCGCTCGGCACGCCCAGCTCCCTCGCCACCCTCCTCCCCTCCTCCGACCTCTGGGATCACCAGATGGACCTCCTCCTCCTCGACGACCCCGTCGCCGGCTTCCCCAAGGCCCACCAGCTGACCCGCCTCCATCCGCCGCCGGAGCCGCCGCGGCCCGATCCTCCCGCCCCCGCCGCGGCCGGCGACGCCGTTCTCCCGCGGCCGCCGGAGCCGGATCCCACCCAGGTGGACAACCTTGATGACAATCATTTATTTGATGATATGGTTCAAGAGATGGAACATATTCTTCTCAATTCAGGGGAGCCCCATGAAAGTGCATCTTTTACAGATTATCGCGCAAATAATTCTTCCCAAGCTCATCATTTCAGAGATGGAAGCACCACTGCCTCTACTTCTGGTACAGATGATGCTTATGTATATCCCCTTCCTCACCATCCTTCAAAAATTGATTGGGTGGAGGTTGTGGGAGCAAAGCAAAGAACAGGAGATGTTTCTTTTGGTGAGCGAATGGTTGGGGTCAGAGAATATACTGTTTATTTGTTAAAAGTCAAGAGCGGAGAAGATGACTGGGAAATTGAGAGGCGGTACCGTGAATTTTATGCTCTATACCAACAACTCAAGCTCTTGTTTGCTGAGAAAGGTTTCAGTCTGCC ] [+] EMBL CF323438 [ GTTCAAGAGATGGAACATATTCTTCTCAATTCAGGGGAGCCCCATGAAAGTGCATCTTTTACAGATTATCGCGCAAATAATTCTTCCCAAGCTCATCATTTCAGAGATGGAAGCACCACTGCCTCTACTTCTGGTACAGATGATGCTTATGTATATCCCCTTCCTCACCATCCTTCAAAAATTGATTGGGTGGAGGTTGTGGGAGCAAAGCAAAGAACAGGAGATGTTTCTTTTGGTGAGCGAATGGTTGGGGTCAGAGAATATACTGTTTATTTGTTAAAAGTCAAGAGCGGAGAAGATGACTGGGAAATTGAGAGGCGGTACCGTGAATTTTATGCTCTATACCAACAACTCAAGCTCTTGTTTGCTGAGAAAGGTTTCAGTCTGCCTCCTGCATGGAGAAACGTTGAAAAAGAATCAAGTAAATTATTTGGGAATGCATCCCCAGACATCGTCAATGAGAGAAGTAGTCTAATTCAAGACTGTTTGTGTTCTTTGCTTGTCTCTAGTTATCCATTTGGAACACCCACTCCTCTGGTTAGTTTTTTGTCACCAGGGAGTCCTGCTTATGAGTATAGCTTGTTAAAAACTCTTATCCCAAGATCTTTGC AAGGCTAAGCAGTGA ] [+] EMBL OSC689 [ AATTCTTCCCAAGCTCATCATTTCAGAGATGGAAGCACCACTGCCTCTACTTCTGGTACAGATGATGCTTATGTATATCCCCTTCCTCACCATCCTTCAAAAATTGATTGGGTGGAGGTTGTGGGAGCAAAGCAAAGAACAGGAGATGTTTCTTTTGGTGAGCGAATGGTTGGGGTCAGAGAATATACTGTTTATTTGTTAAAAGTCAAGAGCGGAGAAGATGACTGGGAAATTGAGAGGCGGTACCGTGAATTTTATGCTCTATACCAACAACTCAAGCTCTTGTTTGCTGAGAAAGGTTTCAGTCTGCCTCCTGCATNGAGAAACGTTGAAAAAGANTCAAGTAAATTATTTGGGAATGCATCCCCAGACATCGTCAATGAGAGAAGTAGTCTAATTCAAGACTG TTGTGNTCTTTGCTTGTCTCTAG TATCCATT ] [-] EMBL CB620575 [ TATTATGAGTATTCGGAAGAAAATAGCAGCTATGCTTCCAGGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGAGCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTTTCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTTGTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATATTTCCGTTTCAGGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCAAAAAAAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATACAACCCCCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGGTTC TTTGCCAGATACGTGTACATGAGCTCAGT ] [+] EMBL AU172718 [ CAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGGTTCTTTTGCCAGATACGTCTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAANAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTGCAAAAAA AAAAAAAAA ] [+] EMBL CA756618 [ GCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGGTTC TTTGCCAGATACGTCTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTGCATCAAACGCTTCANAAAAAAAAAAAAA] consensusID : consensus_12327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence [TATGCTTCCATGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGAGCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTTTCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTTTTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAGGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTTTCCTCATCATCTGGTTTTTTTTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTTTTATGGGTTCTTTGCCAGATACGTTTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTGCATCAAACGCTTCAAAGGATTCAGTGCTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAGA] [-] EMBL CB668210 [TATGCTTCCATGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGAGCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTTTCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTTTTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAGGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTTTCCTCATCATCTGGTTTTTTTTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTTTTATGGGTTCTTTGCCAGATACGTTTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTGCATCAAACGCTTCAAAGGATTCAGTGCTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAGA] consensusID : consensus_12327#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [TCTGGTGTTGCAGTTGGANATCGNACATTTTTTCCTTTCNGGGGAGGAGNACAAGGGGTTTGGNGGATCATNTCCANAACAAGCTTCAGGAAAAAGATATTCCTTGCGGTAGGGTGTGCCANCAAGGCAGGAAATCGTGCGTTGAACAAGCTGTGCGGGACGATGCAAGCAGACCATCAACTCAGTGATCCAACCNTCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGTTCTTTGCCAGATACGTNTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTGCATCAAACGCTTCAAAAAAAAAA] [+] EMBL AA753384 [TCTGGTGTTGCAGTTGGANATCGNACATTTTTTCCTTTCNGGGGAGGAGNACAAGGGGTTTGGNGGATCATNTCCANAACAAGCTTCAGGAAAAAGATATTCCTTGCGGTAGGGTGTGCCANCAAGGCAGGAAATCGTGCGTTGAACAAGCTGTGCGGGACGATGCAAGCAGACCATCAACTCAGTGATCCAACCNTCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGTTCTTTGCCAGATACGTNTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTGCATCAAACGCTTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12327#0 ACACCACCAATCCCTAGCAGCAGCAGCAGCGGCGGCGGCGGGGGATCCAGCATGGAGCCA 60 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 GCCCGACGATCCACCGCCGCGTCGGACGGCGGCGGCGGCTCGTCGGCGGCCGGATCGGAC 120 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 GGCGAGGACGACAGGTACCTCAGCGCCAGCTCCGCGCTCGGCACGCCCAGCTCCCTCGCC 180 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 ACCCTCCTCCCCTCCTCCGACCTCTGGGATCACCAGATGGACCTCCTCCTCCTCGACGAC 240 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 CCCGTCGCCGGCTTCCCCAAGGCCCACCAGCTGACCCGCCTCCATCCGCCGCCGGAGCCG 300 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 CCGCGGCCCGATCCTCCCGCCCCCGCCGCGGCCGGCGACGCCGTTCTCCCGCGGCCGCCG 360 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 GAGCCGGATCCCACCCAGGTGGACAACCTTGATGACAATCATTTATTTGATGATATGGTT 420 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 CAAGAGATGGAACATATTCTTCTCAATTCAGGGGAGCCCCATGAAAGTGCATCTTTTACA 480 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 GATTATCGCGCAAATAATTCTTCCCAAGCTCATCATTTCAGAGATGGAAGCACCACTGCC 540 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 TCTACTTCTGGTACAGATGATGCTTATGTATATCCCCTTCCTCACCATCCTTCAAAAATT 600 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 GATTGGGTGGAGGTTGTGGGAGCAAAGCAAAGAACAGGAGATGTTTCTTTTGGTGAGCGA 660 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 ATGGTTGGGGTCAGAGAATATACTGTTTATTTGTTAAAAGTCAAGAGCGGAGAAGATGAC 720 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 TGGGAAATTGAGAGGCGGTACCGTGAATTTTATGCTCTATACCAACAACTCAAGCTCTTG 780 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 TTTGCTGAGAAAGGTTTCAGTCTGCCTCCTGCATGGAGAAACGTTGAAAAAGAATCAAGT 840 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 AAATTATTTGGGAATGCATCCCCAGACATCGTCAATGAGAGAAGTAGTCTAATTCAAGAC 900 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 TGTTTGTGTTCTTTGCTTGTCTCTAGTTATCCATTTGGAACACCCACTCCTCTGGTTAGT 960 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 TTTTTGTCACCAGGGAGTCCTGCTTATGAGTATAGCTTGTTAAAAACTCTTATCCCAAGA 1020 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 TCTTTGCAAAGGCTAAGCAGTGATTCACATTCCAAAGGCTCAAGCTGCAATGGAACTTCA 1080 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 CACAAAGATTCTGCCTCAATGGGCAAGACTATATCACTTGTTGTGGAGGATAGGCCTCGG 1140 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 AAGTCCACTAGACAGTTGTTGGAGTTACAACACTACAATTGTGCTGGATGCCATAGGCAT 1200 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 TTGGATGCTGGGCGAACAATGCTGCAAGAAATTGTCCAAACAATCGGATGGAACAAGCCT 1260 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 CGGTTTTGTGCTTACACTGGCCAATTGTTTTGTGCTTCTTGTCACACAAATGATACTGCA 1320 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 GTTCTGCCAGCAAAAGTGCTACACCACTGGGATTTCTCTTTATATCCTATTTCCCAGTTA 1380 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 GCAAAAGCATATTTGGATTCCATCTATGACCAGCCTATGCTCTGTGTAAGTGCTGTCAAT 1440 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 CCTTTCCTCTTTGCAAAGGTGCCAGCTCTGCTTAATATTATGAGTATTCGGAAGAAAATA 1500 consensus_12327#1 ------------------------------------------------------------ consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 GCAGCTATGCTTCCATGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGA 1560 consensus_12327#1 -----TATGCTTCCATGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGA 55 consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 GCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTT 1620 consensus_12327#1 GCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTT 115 consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 TCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTT 1680 consensus_12327#1 TCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTT 175 consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 TTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGG 1740 consensus_12327#1 TTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGG 235 consensus_12327#2 ------------------------------------------------------------ consensus_12327#0 CAAGCTTGTGATG--ATCCGCTAGCACTCATCTTTCCGTTTCAGGAGGATGAAGCTACAA 1798 consensus_12327#1 CAAGCTTGTGATG--ATCCGCTAGCACTCATCTTTCCGTTTCAGGAGGATGAAGCTACAA 293 consensus_12327#2 ---TCTGGTGTTGCAGTTGGANATCGNACATTTTTTCCTTTCNGG-GGAGGAGN--ACAA 54 ** *** ** * * * * *** *** * **** ** *** ** **** consensus_12327#0 AGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTC 1858 consensus_12327#1 AGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTC 353 consensus_12327#2 GG---GGTTTG-GNGGATCA--TNTCCANAA-CAA-GCTTCAGGAAAAAGA---TAT-TC 102 * **** * * ****** **** ** *** ************ * *** ** consensus_12327#0 CTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGC 1918 consensus_12327#1 CTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGC 413 consensus_12327#2 CTTGCGGTA-GGGTG-TGCCANCAA-GGCAGGAAA-TCGT-GCG-TTGAACAAGCTGTGC 156 ********* ***** ***** *** ********* **** *** *************** consensus_12327#0 GTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTCTCCTCATCAT 1978 consensus_12327#1 GTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTTTCCTCATCAT 473 consensus_12327#2 GGGACGATGCAAGCAGACCATCAACTCAGT-GATCCAACCNTCATCGTTCTCCTCATCAT 215 * **************************** ********* ******** ********** consensus_12327#0 CTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAA 2038 consensus_12327#1 CTGGTTTTTTTTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAA 533 consensus_12327#2 CTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAA 275 ********** ************************************************* consensus_12327#0 ATAGCAGCCCTGTAATTCTTATGGGTTCTTTGCCAGATACGTCTACATGAGCTCAGTTGT 2098 consensus_12327#1 ATAGCAGCCCTGTAATTTTTATGGGTTCTTTGCCAGATACGTTTACATGAGCTCAGTTGT 593 consensus_12327#2 ATAGCAGCCCTGTAATTCTTATGG-TTCTTTGCCAGATACGTNTACATGAGCTCAGTTGT 334 ***************** ****** ***************** ***************** consensus_12327#0 ATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGA 2158 consensus_12327#1 ATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGA 653 consensus_12327#2 ATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGA 394 ************************************************************ consensus_12327#0 TTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAG 2218 consensus_12327#1 TTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAG 713 consensus_12327#2 TTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAG 454 ************************************************************ consensus_12327#0 CATTTTTGTGCGTTTGTTTGCATAAAAAAAAAAAAAAAAAAA------------------ 2260 consensus_12327#1 CATTTTTGTGCGTTTGTTTGCATCAAACGCTTCAAAGGATTCAGTGCTTTTTTTTTAAAA 773 consensus_12327#2 CATTTTTGTGCGTTTGTTTGCATCAAACGCTTCAAAAAAAAAA----------------- 497 *********************** *** *** * consensus_12327#0 -------------------- consensus_12327#1 AAAAAAAAAAAAAAAAAAGA 793 consensus_12327#2 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||