These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1199 fasta sequence [CTCGCCCGCCTCCGTTCCGCCTTTGGTCCAGATCCACGCGTGT-TGCGGACTTGCGGTTGCTTTTGTTCGTCTTCTCCCGGAGATTCGGCGTGTTCGTGCTGCGAAATCCGAACTACTTCTGCTGCTAAGATTTCTGCCGCGTGCTAATGGCGGAGGAAGGGTACAAGGTTGTTCTTAACGTGTACGACCTCAGCAACGGCCTCGCGCGGCAGCTCTCCACCTCCTTCCTCGGCAAGCCAATCGAGGCCATCTGGCATACGGGCGTGGTGGTGTACGGGAACGAGTACTTCTTCGGCGGCGGGATCCAGTCGCTGGCGGCGGGGAGGACGCCGTACGGGCGGCCGGTGCGGGTGGTGGAGATGGGCGAGACGCACATCCCGCGGGAGGTGTTCGAGGACTACCTCCGCGACATC-TCGCCGCGGTACACGGCGGAGACGTACCGGCTGCTCAGCCACAACTGCAACAACTTCAGCAACGAGGTGGCGCAATTCCTCGTCGGCGCCGGCATCCCCGACTACATCCTCAACCTCCCCGCCGAGGTCATGTCCAGCCCCATGGGCCCCCTCATCATGCCCATGATTCAGAACCTCGAGTCCACGCTCCGGACCAACGCCGCGCCGCAGGCCACGCAGTTCGTCCCCTCGTCCGTGCCGCCGCCGCCGCCGCCGCAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAG-CAAGAAGACAAGGCGGCCAAAGCGAAGCAGGGCTCGGCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAGGAGGAGGTGATGCGGGAGTTCGCGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAGGCGGCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCAACGCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCA-CCATACATTCGACGCGATGATGCGTGTCGCA-ATCGCAATTACCGAGTTTTTACGGAGTAG-TTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTACTGTGTGTGAACCTGGACTGTTCTGCTTAAATTCGATAATCTTTCTCTTGTCTACTATCCGATGGATGGATAACGATAACCCATTCTCCATTATTGAATAGACAAAGCATGTTTGTGGTGTCTGGTGATCAGACTGTTAACTGTGATACTACTATTGTC] [+] EMBL AK060071 [CTCGCCCGCCTCCGTTCCGCCTTTGGTCCAGATCCACGCGTGT TGCGGACTTGCGGTTGCTTTTGTTCGTCTTCTCCCGGAGATTCGGCGTGTTCGTGCTGCGAAATCCGAACTACTTCTGCTGCTAAGATTTCTGCCGCGTGCTAATGGCGGAGGAAGGGTACAAGGTTGTTCTTAACGTGTACGACCTCAGCAACGGCCTCGCGCGGCAGCTCTCCACCTCCTTCCTCGGCAAGCCAATCGAGGCCATCTGGCATACGGGCGTGGTGGTGTACGGGAACGAGTACTTCTTCGGCGGCGGGATCCAGTCGCTGGCGGCGGGGAGGACGCCGTACGGGCGGCCGGTGCGGGTGGTGGAGATGGGCGAGACGCACATCCCGCGGGAGGTGTTCGAGGACTACCTCCGCGACATC TCGCCGCGGTACACGGCGGAGACGTACCGGCTGCTCAGCCACAACTGCAACAACTTCAGCAACGAGGTGGCGCAATTCCTCGTCGGCGCCGGCATCCCCGACTACATCCTCAACCTCCCCGCCGAGGTCATGTCCAGCCCCATGGGCCCCCTCATCATGCCCATGATTCAGAACCTCGAGTCCACGCTCCGGACCAACGCCGCGCCGCAGGCCACGCAGTTCGTCCCCTCGTCCGTGCCGCCGCCGCCGCCGCCGCAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAG CAAGAAGACAAGGCGGCCAAAGCGAAGCAGGGCTCGGCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAGGAGGAGGTGATGCGGGAGTTCGCGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAGGCGGCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCAACGCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCA CCATACATTCGACGCGATGATGCGTGTCGCA ATCGCAATTACCGAGTTTTTACGGAGTAG TTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTACTGTGTGTGAACCTGGACTGTTCTGCTTAAATTCGATAATCTTTCTCTTGTCTACTATCCGATGGATGGATAACGATAACCCATTCTCCATTATTGAATAGACAAAGCATGTTTGTGGTGTCTGGTGATCAGACTGTTAACTGTGATACTACTATTGTC] [+] EMBL AK102943 [ GCCCGCCTCCGTTCCGCCTTTGGTCCAGATCCACGCGTGT TGCGGACTTGCGGTTGCTTTTGTTCGTCTTCTCCCGGAGATTCGGCGTGTTCGTGCTGCGAAATCCGAACTACTTCTGCTGCTAAGATTTCTGCCGCGTGCTAATGGCGGAGGAAGGGTACAAGGTTGTTCTTAACGTGTACGACCTCAGCAACGGCCTCGCGCGGCAGCTCTCCACCTCCTTCCTCGGCAAGCCAATCGAGGCCATCTGGCATACGGGCGTGGTGGTGTACGGGAACGAGTACTTCTTCGGCGGCGGGATCCAGTCGCTGGCGGCGGGGAGGACGCCGTACGGGCGGCCGGTGCGGGTGGTGGAGATGGGCGAGACGCACATCCCGCGGGAGGTGTTCGAGGACTACCTCCGCGACATC TCGCCGCGGTACACGGCGGAGACGTACCGGCTGCTCAGCCACAACTGCAACAACTTCAGCAACGAGGTGGCGCAATTCCTCGTCGGCGCCGGCATCCCCGACTACATCCTCAACCTCCCCGCCGAGGTCATGTCCAGCCCCATGGGCCCCCTCATCATGCCCATGATTCAGAACCTCGAGTCCACGCTCCGGACCAACGCCGCGCCGCAGGCCACGCAGTTCGTCCCCTCGTCCGTGCCGCCGCCGCCGCCGCCGCAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAG CAAGAAGACAAGGCGGCCAAAGCGAAGCAGGGCTCGGCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAGGAGGAGGTGATGCGGGAGTTCGCGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAGGCGGCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCAACGCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCA CCATACATTCGACGCGATGATGCGTGTCGCA ATCGCAATTACCGAGTTTTTACGGAGTAG TTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTACTGTGTGTGAACCTGGACTGTTCTGCTTAAATTCGATAATCTT ] [+] EMBL AK104442 [ GTCCAGATCCACGCGTGT TGCGGACTTGCGGTTGCTTTTGTTCGTCTTCTCCCGGAGATTCGGCGTGTTCGTGCTGCGAAATCCGAACTACTTCTGCTGCTAAGATTTCTGCCGCGTGCTAATGGCGGAGGAAGGGTACAAGGTTGTTCTTAACGTGTACGACCTCAGCAACGGCCTCGCGCGGCAGCTCTCCACCTCCTTCCTCGGCAAGCCAATCGAGGCCATCTGGCATACGGGCGTGGTGGTGTACGGGAACGAGTACTTCTTCGGCGGCGGGATCCAGTCGCTGGCGGCGGGGAGGACGCCGTACGGGCGGCCGGTGCGGGTGGTGGAGATGGGCGAGACGCACATCCCGCGGGAGGTGTTCGAGGACTACCTCCGCGACATC TCGCCGCGGTACACGGCGGAGACGTACCGGCTGCTCAGCCACAACTGCAACAACTTCAGCAACGAGGTGGCGCAATTCCTCGTCGGCGCCGGCATCCCCGACTACATCCTCAACCTCCCCGCCGAGGTCATGTCCAGCCCCATGGGCCCCCTCATCATGCCCATGATTCAGAACCTCGAGTCCACGCTCCGGACCAACGCCGCGCCGCAGGCCACGCAGTTCGTCCCCTCGTCCGTGCCGCCGCCGCCGCCGCCGCAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAG CAAGAAGACAAGGCGGCCAAAGCGAAGCAGGGCTCGGCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAGGAGGAGGTGATGCGGGAGTTCGCGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAGGCGGCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCAACGCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCA CCATACATTCGACGCGATGATGCGTGTCGCA ATCGCAATTACCGAGTTTTTACGGAGTAG TTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTACTGTGTGTGAACCTGGACTGTTCTGCTTAAATTCGATAATCTTTCTCTTGTCTACTATCCGATGGATGGATAACGATAACCCATTCTCCATTATTGAATAGACAAAGCATGTTTGTG ] [+] EMBL C93429 [ ccgCACGCGTGTNTGCGGACTTGCGGTTGCTTTTGTTCGTCTTCTCCCGGAGATTCGGCGTGTTCGTGCTGCGAAATCCGAACTACTTCTGCTGCTAAGATTTCTGCCGCGTGCTAATGGCGGAGGAAGGGTACAAGGTTGTTCTTAACGTGTACGACCTCAGCAACGGCCTCGCGCGGCAGCTCTCCACCTCCTTCCTCGGCAAGCCAATCGAGGCCATCTGGCATACGGGCGTNGTGGTGTACGGGAACGAGTACTTCTTCGGCGGCGGGATCCAGTCGCTGGCGGCGGGGAGGACGCCGTACGGGCGGCCGGTGCGGGTGGTGGAGATGGGCGAGACGNACATCCCGCGGGAGGTG ] [+] EMBL AU057799 [ ACGCGTGT TGCGGACTTGCGGTTGCTTTTGTTCGTCTTCTCCCGGAGATTCGGCGTGTTCGTGCTGCGAAATCCGAACTACTTCTGCTGCTAAGATTTCTGCCGCGTGCTAATGGCGGAGGAAGGGTACAAGGTTGTTCTTAACGTGTACGACCTCAGCAACGGCCTCGCGCGGCAGCTCTCCACCTCCTTCCTCGGCAAGCCAATCGAGGCCATCTGGCATACGGGCGTGGTGGTGTACGGGAACGAGTACTTCTTCGGCGGCGGGATCCAGTCGCTGGCGGCGGGGAGGACGCCGTACGGGCGGCCGGTGCGGGTGGTGGAGATGGGCGAGACGCACATCCCGCGGGAGGTGTTCGAGGACTACCTCCGC ] [+] EMBL C96757 [ TGT TGCGGACTTGCGGTTGCTTTTGTTCGTCTTCTCCCGGAGATTCGGCGTGTTCGTGCTGCGAAATCCGAACTACTTCTGCTGCTAAGATTTCTGCCGCGTGCTAATGGCGGAGGAAGGGTACAAGGTTGTTCTTAACGTGTACGACCTCAGCAACGGCCTCGCGCGGCAGCTCTCCACCTCCTTCCTCGGCAAGCCAATCGAGGCCATCTGGCATACGGGCGTGGTGGTGTACGGGAACGAGTACTTCTTCGGCGGCGGGATCCAGTCGCTGGCGGCGGGGAGGACGCCGTACGGGCGGCCGGTGCGGGTGGTGGAGATGGGCGAGACGCACATCCCGCGGGAGGTGTTCGAGGACTACCTCCGCGACATCTTCGCCGCGGTACACGGCGGAGACTTAC ] [+] EMBL BI812232 [ GGCCACGCAGTTCGTCCCCTCGTCCGTGCC CC CCTCC CCGCC CAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAGCCAAGAAGACAA GCGGCCAAAGCGAAGCAGGGCTC GCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAGGAGGAGGTGAT CGGGAGTTC CGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAGGC GCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCGACGCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCACCCATACATTCGACGCGATGATGCGTGTCGCA ATCGCAATTACCGAGTTTTTACGGAGTAG TTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTACTGTGTGTGAACCTGGACTGTTCTGCTTAAATTCGATAATCTTTCTCTTGTCTACTAaaaaaaaaa ] [+] EMBL BI800985 [ cgACGCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCA CCATACATTCGACGCGATGATGCGTGTC CA ATCGCAATTACCGAGTTTTTACGGAGTAGTTTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTACTGTGTGTGAACCTGGACTGTTCTGCTTAAATTCGATAATCTTTCTCTTGTCTACTATCCGATGGATGGATAACGATAACCCATTCTCCATTATTGAATAGACAAAGCATGTTTGTGGTGTCTGGTGATCAaaaa ] [+] EMBL BI813835 [ GAGAGACACACACACCA CCATACATTCGACGCGATGATGCGTGTCGCACATCGCAATTACCGAGTTTTTACGGAGTAG TTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTACTGTGTGTGAACCTGGACT TTCTGCTTAAATTCGATAATCTTTCTCTTGTCTACTAaaaaaaaaa ] consensusID : consensus_12329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [TCGTCGGCGCCGGCATCCCCGATACANCCTCAACCTCCCCGCCGAGGTCATGTCCAGCCCCATGGGCCCCCTCATCATGCCCATGATTCAGAACCTCGAGTCCACGCTCCGGACCAACGCCGCGCCGCAGGCCACGCAGTTCGTCCCCTCGTCCCGTGCCGCCGCCGCCGCCGCCGCAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAGCAAGAAGACAAGGCGGCCAAAGCGAAGCAGGGCTCGGCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAGGAGGAGGTGATGCGGGAGTTCGCGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAGGCGGCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCAACGCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCACCATACATTCGACGCGATGATGCGTGTCGCAATCGCAATTACCGAGTTTTTACGGAGTAGTTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTAAAAAAAAAAAACAAAAAAA] [+] EMBL AU101722 [TCGTCGGCGCCGGCATCCCCGATACANCCTCAACCTCCCCGCCGAGGTCATGTCCAGCCCCATGGGCCCCCTCATCATGCCCATGATTCAGAACCTCGAGTCCACGCTCCGGACCAACGCCGCGCCGCAGGCCACGCAGTTCGTCCCCTCGTCCCGTGCCGCCGCCGCCGCCGCCGCAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAGCAAGAAGACAAGGCGGCCAAAGCGAAGCAGGGCTCGGCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAGGAGGAGGTGATGCGGGAGTTCGCGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAGGCGGCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCAACGCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCACCATACATTCGACGCGATGATGCGTGTCGCAATCGCAATTACCGAGTTTTTACGGAGTAGTTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTAAAAAAAAAAAACAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12329#0 CTCGCCCGCCTCCGTTCCGCCTTTGGTCCAGATCCACGCGTGTTGCGGACTTGCGGTTGC 60 consensus_12329#1 ------------------------------------------------------------ consensus_12329#0 TTTTGTTCGTCTTCTCCCGGAGATTCGGCGTGTTCGTGCTGCGAAATCCGAACTACTTCT 120 consensus_12329#1 ------------------------------------------------------------ consensus_12329#0 GCTGCTAAGATTTCTGCCGCGTGCTAATGGCGGAGGAAGGGTACAAGGTTGTTCTTAACG 180 consensus_12329#1 ------------------------------------------------------------ consensus_12329#0 TGTACGACCTCAGCAACGGCCTCGCGCGGCAGCTCTCCACCTCCTTCCTCGGCAAGCCAA 240 consensus_12329#1 ------------------------------------------------------------ consensus_12329#0 TCGAGGCCATCTGGCATACGGGCGTGGTGGTGTACGGGAACGAGTACTTCTTCGGCGGCG 300 consensus_12329#1 ------------------------------------------------------------ consensus_12329#0 GGATCCAGTCGCTGGCGGCGGGGAGGACGCCGTACGGGCGGCCGGTGCGGGTGGTGGAGA 360 consensus_12329#1 ------------------------------------------------------------ consensus_12329#0 TGGGCGAGACGCACATCCCGCGGGAGGTGTTCGAGGACTACCTCCGCGACATCTCGCCGC 420 consensus_12329#1 ------------------------------------------------------------ consensus_12329#0 GGTACACGGCGGAGACGTACCGGCTGCTCAGCCACAACTGCAACAACTTCAGCAACGAGG 480 consensus_12329#1 ------------------------------------------------------------ consensus_12329#0 TGGCGCAATTCCTCGTCGGCGCCGGCATCCCCGACTACATCCTCAACCTCCCCGCCGAGG 540 consensus_12329#1 ------------TCGTCGGCGCCGGCATCCCCGA-TACANCCTCAACCTCCCCGCCGAGG 47 ********************** **** ******************** consensus_12329#0 TCATGTCCAGCCCCATGGGCCCCCTCATCATGCCCATGATTCAGAACCTCGAGTCCACGC 600 consensus_12329#1 TCATGTCCAGCCCCATGGGCCCCCTCATCATGCCCATGATTCAGAACCTCGAGTCCACGC 107 ************************************************************ consensus_12329#0 TCCGGACCAACGCCGCGCCGCAGGCCACGCAGTTCGTCCCCTCGTCC-GTGCCGCCGCCG 659 consensus_12329#1 TCCGGACCAACGCCGCGCCGCAGGCCACGCAGTTCGTCCCCTCGTCCCGTGCCGCCGCCG 167 *********************************************** ************ consensus_12329#0 CCGCCGCCGCAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAGCAAGAAGACAAGGCG 719 consensus_12329#1 CCGCCGCCGCAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAGCAAGAAGACAAGGCG 227 ************************************************************ consensus_12329#0 GCCAAAGCGAAGCAGGGCTCGGCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAG 779 consensus_12329#1 GCCAAAGCGAAGCAGGGCTCGGCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAG 287 ************************************************************ consensus_12329#0 GAGGAGGTGATGCGGGAGTTCGCGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAG 839 consensus_12329#1 GAGGAGGTGATGCGGGAGTTCGCGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAG 347 ************************************************************ consensus_12329#0 GCGGCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCAACGCCACCATGCAGCAG 899 consensus_12329#1 GCGGCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCAACGCCACCATGCAGCAG 407 ************************************************************ consensus_12329#0 AGCTAGACGAGAGAGACACACACACCACCATACATTCGACGCGATGATGCGTGTCGCAAT 959 consensus_12329#1 AGCTAGACGAGAGAGACACACACACCACCATACATTCGACGCGATGATGCGTGTCGCAAT 467 ************************************************************ consensus_12329#0 CGCAATTACCGAGTTTTTACGGAGTAGTTAACTTCTTTATGAATGAGAAGGTGATTTCTG 1019 consensus_12329#1 CGCAATTACCGAGTTTTTACGGAGTAGTTAACTTCTTTATGAATGAGAAGGTGATTTCTG 527 ************************************************************ consensus_12329#0 TAGCGTATTGATTGTTTGTTACTGTGTGTGAACCTGGACTGTTCTGCTTAAATTCGATAA 1079 consensus_12329#1 TAGCGTATTGATTGTTTGTTAAAAAAAAAAAACAAAAAAA-------------------- 567 ********************* *** * consensus_12329#0 TCTTTCTCTTGTCTACTATCCGATGGATGGATAACGATAACCCATTCTCCATTATTGAAT 1139 consensus_12329#1 ------------------------------------------------------------ consensus_12329#0 AGACAAAGCATGTTTGTGGTGTCTGGTGATCAGACTGTTAACTGTGATACTACTATTGTC 1199 consensus_12329#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||