|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1199 fasta sequence
[CTCGCCCGCCTCCGTTCCGCCTTTGGTCCAGATCCACGCGTGT-TGCGGACTTGCGGTTGCTTTTGTTCGTCTTCTCCCGGAGATTCGGCGTGTTCGTGCTGCGAAATCCGAACTACTTCTGCTGCTAAGATTTCTGCCGCGTGCTAATGGCGGAGGAAGGGTACAAGGTTGTTCTTAACGTGTACGACCTCAGCAACGGCCTCGCGCGGCAGCTCTCCACCTCCTTCCTCGGCAAGCCAATCGAGGCCATCTGGCATACGGGCGTGGTGGTGTACGGGAACGAGTACTTCTTCGGCGGCGGGATCCAGTCGCTGGCGGCGGGGAGGACGCCGTACGGGCGGCCGGTGCGGGTGGTGGAGATGGGCGAGACGCACATCCCGCGGGAGGTGTTCGAGGACTACCTCCGCGACATC-TCGCCGCGGTACACGGCGGAGACGTACCGGCTGCTCAGCCACAACTGCAACAACTTCAGCAACGAGGTGGCGCAATTCCTCGTCGGCGCCGGCATCCCCGACTACATCCTCAACCTCCCCGCCGAGGTCATGTCCAGCCCCATGGGCCCCCTCATCATGCCCATGATTCAGAACCTCGAGTCCACGCTCCGGACCAACGCCGCGCCGCAGGCCACGCAGTTCGTCCCCTCGTCCGTGCCGCCGCCGCCGCCGCCGCAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAG-CAAGAAGACAAGGCGGCCAAAGCGAAGCAGGGCTCGGCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAGGAGGAGGTGATGCGGGAGTTCGCGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAGGCGGCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCAACGCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCA-CCATACATTCGACGCGATGATGCGTGTCGCA-ATCGCAATTACCGAGTTTTTACGGAGTAG-TTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTACTGTGTGTGAACCTGGACTGTTCTGCTTAAATTCGATAATCTTTCTCTTGTCTACTATCCGATGGATGGATAACGATAACCCATTCTCCATTATTGAATAGACAAAGCATGTTTGTGGTGTCTGGTGATCAGACTGTTAACTGTGATACTACTATTGTC]
[+] EMBL AK060071 [CTCGCCCGCCTCCGTTCCGCCTTTGGTCCAGATCCACGCGTGT TGCGGACTTGCGGTTGCTTTTGTTCGTCTTCTCCCGGAGATTCGGCGTGTTCGTGCTGCGAAATCCGAACTACTTCTGCTGCTAAGATTTCTGCCGCGTGCTAATGGCGGAGGAAGGGTACAAGGTTGTTCTTAACGTGTACGACCTCAGCAACGGCCTCGCGCGGCAGCTCTCCACCTCCTTCCTCGGCAAGCCAATCGAGGCCATCTGGCATACGGGCGTGGTGGTGTACGGGAACGAGTACTTCTTCGGCGGCGGGATCCAGTCGCTGGCGGCGGGGAGGACGCCGTACGGGCGGCCGGTGCGGGTGGTGGAGATGGGCGAGACGCACATCCCGCGGGAGGTGTTCGAGGACTACCTCCGCGACATC TCGCCGCGGTACACGGCGGAGACGTACCGGCTGCTCAGCCACAACTGCAACAACTTCAGCAACGAGGTGGCGCAATTCCTCGTCGGCGCCGGCATCCCCGACTACATCCTCAACCTCCCCGCCGAGGTCATGTCCAGCCCCATGGGCCCCCTCATCATGCCCATGATTCAGAACCTCGAGTCCACGCTCCGGACCAACGCCGCGCCGCAGGCCACGCAGTTCGTCCCCTCGTCCGTGCCGCCGCCGCCGCCGCCGCAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAG CAAGAAGACAAGGCGGCCAAAGCGAAGCAGGGCTCGGCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAGGAGGAGGTGATGCGGGAGTTCGCGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAGGCGGCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCAACGCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCA CCATACATTCGACGCGATGATGCGTGTCGCA ATCGCAATTACCGAGTTTTTACGGAGTAG TTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTACTGTGTGTGAACCTGGACTGTTCTGCTTAAATTCGATAATCTTTCTCTTGTCTACTATCCGATGGATGGATAACGATAACCCATTCTCCATTATTGAATAGACAAAGCATGTTTGTGGTGTCTGGTGATCAGACTGTTAACTGTGATACTACTATTGTC]
[+] EMBL AK102943 [ GCCCGCCTCCGTTCCGCCTTTGGTCCAGATCCACGCGTGT TGCGGACTTGCGGTTGCTTTTGTTCGTCTTCTCCCGGAGATTCGGCGTGTTCGTGCTGCGAAATCCGAACTACTTCTGCTGCTAAGATTTCTGCCGCGTGCTAATGGCGGAGGAAGGGTACAAGGTTGTTCTTAACGTGTACGACCTCAGCAACGGCCTCGCGCGGCAGCTCTCCACCTCCTTCCTCGGCAAGCCAATCGAGGCCATCTGGCATACGGGCGTGGTGGTGTACGGGAACGAGTACTTCTTCGGCGGCGGGATCCAGTCGCTGGCGGCGGGGAGGACGCCGTACGGGCGGCCGGTGCGGGTGGTGGAGATGGGCGAGACGCACATCCCGCGGGAGGTGTTCGAGGACTACCTCCGCGACATC TCGCCGCGGTACACGGCGGAGACGTACCGGCTGCTCAGCCACAACTGCAACAACTTCAGCAACGAGGTGGCGCAATTCCTCGTCGGCGCCGGCATCCCCGACTACATCCTCAACCTCCCCGCCGAGGTCATGTCCAGCCCCATGGGCCCCCTCATCATGCCCATGATTCAGAACCTCGAGTCCACGCTCCGGACCAACGCCGCGCCGCAGGCCACGCAGTTCGTCCCCTCGTCCGTGCCGCCGCCGCCGCCGCCGCAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAG CAAGAAGACAAGGCGGCCAAAGCGAAGCAGGGCTCGGCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAGGAGGAGGTGATGCGGGAGTTCGCGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAGGCGGCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCAACGCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCA CCATACATTCGACGCGATGATGCGTGTCGCA ATCGCAATTACCGAGTTTTTACGGAGTAG TTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTACTGTGTGTGAACCTGGACTGTTCTGCTTAAATTCGATAATCTT ]
[+] EMBL AK104442 [ GTCCAGATCCACGCGTGT TGCGGACTTGCGGTTGCTTTTGTTCGTCTTCTCCCGGAGATTCGGCGTGTTCGTGCTGCGAAATCCGAACTACTTCTGCTGCTAAGATTTCTGCCGCGTGCTAATGGCGGAGGAAGGGTACAAGGTTGTTCTTAACGTGTACGACCTCAGCAACGGCCTCGCGCGGCAGCTCTCCACCTCCTTCCTCGGCAAGCCAATCGAGGCCATCTGGCATACGGGCGTGGTGGTGTACGGGAACGAGTACTTCTTCGGCGGCGGGATCCAGTCGCTGGCGGCGGGGAGGACGCCGTACGGGCGGCCGGTGCGGGTGGTGGAGATGGGCGAGACGCACATCCCGCGGGAGGTGTTCGAGGACTACCTCCGCGACATC TCGCCGCGGTACACGGCGGAGACGTACCGGCTGCTCAGCCACAACTGCAACAACTTCAGCAACGAGGTGGCGCAATTCCTCGTCGGCGCCGGCATCCCCGACTACATCCTCAACCTCCCCGCCGAGGTCATGTCCAGCCCCATGGGCCCCCTCATCATGCCCATGATTCAGAACCTCGAGTCCACGCTCCGGACCAACGCCGCGCCGCAGGCCACGCAGTTCGTCCCCTCGTCCGTGCCGCCGCCGCCGCCGCCGCAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAG CAAGAAGACAAGGCGGCCAAAGCGAAGCAGGGCTCGGCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAGGAGGAGGTGATGCGGGAGTTCGCGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAGGCGGCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCAACGCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCA CCATACATTCGACGCGATGATGCGTGTCGCA ATCGCAATTACCGAGTTTTTACGGAGTAG TTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTACTGTGTGTGAACCTGGACTGTTCTGCTTAAATTCGATAATCTTTCTCTTGTCTACTATCCGATGGATGGATAACGATAACCCATTCTCCATTATTGAATAGACAAAGCATGTTTGTG ]
[+] EMBL C93429 [ ccgCACGCGTGTNTGCGGACTTGCGGTTGCTTTTGTTCGTCTTCTCCCGGAGATTCGGCGTGTTCGTGCTGCGAAATCCGAACTACTTCTGCTGCTAAGATTTCTGCCGCGTGCTAATGGCGGAGGAAGGGTACAAGGTTGTTCTTAACGTGTACGACCTCAGCAACGGCCTCGCGCGGCAGCTCTCCACCTCCTTCCTCGGCAAGCCAATCGAGGCCATCTGGCATACGGGCGTNGTGGTGTACGGGAACGAGTACTTCTTCGGCGGCGGGATCCAGTCGCTGGCGGCGGGGAGGACGCCGTACGGGCGGCCGGTGCGGGTGGTGGAGATGGGCGAGACGNACATCCCGCGGGAGGTG ]
[+] EMBL AU057799 [ ACGCGTGT TGCGGACTTGCGGTTGCTTTTGTTCGTCTTCTCCCGGAGATTCGGCGTGTTCGTGCTGCGAAATCCGAACTACTTCTGCTGCTAAGATTTCTGCCGCGTGCTAATGGCGGAGGAAGGGTACAAGGTTGTTCTTAACGTGTACGACCTCAGCAACGGCCTCGCGCGGCAGCTCTCCACCTCCTTCCTCGGCAAGCCAATCGAGGCCATCTGGCATACGGGCGTGGTGGTGTACGGGAACGAGTACTTCTTCGGCGGCGGGATCCAGTCGCTGGCGGCGGGGAGGACGCCGTACGGGCGGCCGGTGCGGGTGGTGGAGATGGGCGAGACGCACATCCCGCGGGAGGTGTTCGAGGACTACCTCCGC ]
[+] EMBL C96757 [ TGT TGCGGACTTGCGGTTGCTTTTGTTCGTCTTCTCCCGGAGATTCGGCGTGTTCGTGCTGCGAAATCCGAACTACTTCTGCTGCTAAGATTTCTGCCGCGTGCTAATGGCGGAGGAAGGGTACAAGGTTGTTCTTAACGTGTACGACCTCAGCAACGGCCTCGCGCGGCAGCTCTCCACCTCCTTCCTCGGCAAGCCAATCGAGGCCATCTGGCATACGGGCGTGGTGGTGTACGGGAACGAGTACTTCTTCGGCGGCGGGATCCAGTCGCTGGCGGCGGGGAGGACGCCGTACGGGCGGCCGGTGCGGGTGGTGGAGATGGGCGAGACGCACATCCCGCGGGAGGTGTTCGAGGACTACCTCCGCGACATCTTCGCCGCGGTACACGGCGGAGACTTAC ]
[+] EMBL BI812232 [ GGCCACGCAGTTCGTCCCCTCGTCCGTGCC CC CCTCC CCGCC CAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAGCCAAGAAGACAA GCGGCCAAAGCGAAGCAGGGCTC GCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAGGAGGAGGTGAT CGGGAGTTC CGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAGGC GCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCGACGCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCACCCATACATTCGACGCGATGATGCGTGTCGCA ATCGCAATTACCGAGTTTTTACGGAGTAG TTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTACTGTGTGTGAACCTGGACTGTTCTGCTTAAATTCGATAATCTTTCTCTTGTCTACTAaaaaaaaaa ]
[+] EMBL BI800985 [ cgACGCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCA CCATACATTCGACGCGATGATGCGTGTC CA ATCGCAATTACCGAGTTTTTACGGAGTAGTTTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTACTGTGTGTGAACCTGGACTGTTCTGCTTAAATTCGATAATCTTTCTCTTGTCTACTATCCGATGGATGGATAACGATAACCCATTCTCCATTATTGAATAGACAAAGCATGTTTGTGGTGTCTGGTGATCAaaaa ]
[+] EMBL BI813835 [ GAGAGACACACACACCA CCATACATTCGACGCGATGATGCGTGTCGCACATCGCAATTACCGAGTTTTTACGGAGTAG TTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTACTGTGTGTGAACCTGGACT TTCTGCTTAAATTCGATAATCTTTCTCTTGTCTACTAaaaaaaaaa ]
consensusID : consensus_12329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[TCGTCGGCGCCGGCATCCCCGATACANCCTCAACCTCCCCGCCGAGGTCATGTCCAGCCCCATGGGCCCCCTCATCATGCCCATGATTCAGAACCTCGAGTCCACGCTCCGGACCAACGCCGCGCCGCAGGCCACGCAGTTCGTCCCCTCGTCCCGTGCCGCCGCCGCCGCCGCCGCAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAGCAAGAAGACAAGGCGGCCAAAGCGAAGCAGGGCTCGGCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAGGAGGAGGTGATGCGGGAGTTCGCGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAGGCGGCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCAACGCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCACCATACATTCGACGCGATGATGCGTGTCGCAATCGCAATTACCGAGTTTTTACGGAGTAGTTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTAAAAAAAAAAAACAAAAAAA]
[+] EMBL AU101722 [TCGTCGGCGCCGGCATCCCCGATACANCCTCAACCTCCCCGCCGAGGTCATGTCCAGCCCCATGGGCCCCCTCATCATGCCCATGATTCAGAACCTCGAGTCCACGCTCCGGACCAACGCCGCGCCGCAGGCCACGCAGTTCGTCCCCTCGTCCCGTGCCGCCGCCGCCGCCGCCGCAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAGCAAGAAGACAAGGCGGCCAAAGCGAAGCAGGGCTCGGCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAGGAGGAGGTGATGCGGGAGTTCGCGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAGGCGGCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCAACGCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCACCATACATTCGACGCGATGATGCGTGTCGCAATCGCAATTACCGAGTTTTTACGGAGTAGTTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTAAAAAAAAAAAACAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12329#0 CTCGCCCGCCTCCGTTCCGCCTTTGGTCCAGATCCACGCGTGTTGCGGACTTGCGGTTGC 60
consensus_12329#1 ------------------------------------------------------------
consensus_12329#0 TTTTGTTCGTCTTCTCCCGGAGATTCGGCGTGTTCGTGCTGCGAAATCCGAACTACTTCT 120
consensus_12329#1 ------------------------------------------------------------
consensus_12329#0 GCTGCTAAGATTTCTGCCGCGTGCTAATGGCGGAGGAAGGGTACAAGGTTGTTCTTAACG 180
consensus_12329#1 ------------------------------------------------------------
consensus_12329#0 TGTACGACCTCAGCAACGGCCTCGCGCGGCAGCTCTCCACCTCCTTCCTCGGCAAGCCAA 240
consensus_12329#1 ------------------------------------------------------------
consensus_12329#0 TCGAGGCCATCTGGCATACGGGCGTGGTGGTGTACGGGAACGAGTACTTCTTCGGCGGCG 300
consensus_12329#1 ------------------------------------------------------------
consensus_12329#0 GGATCCAGTCGCTGGCGGCGGGGAGGACGCCGTACGGGCGGCCGGTGCGGGTGGTGGAGA 360
consensus_12329#1 ------------------------------------------------------------
consensus_12329#0 TGGGCGAGACGCACATCCCGCGGGAGGTGTTCGAGGACTACCTCCGCGACATCTCGCCGC 420
consensus_12329#1 ------------------------------------------------------------
consensus_12329#0 GGTACACGGCGGAGACGTACCGGCTGCTCAGCCACAACTGCAACAACTTCAGCAACGAGG 480
consensus_12329#1 ------------------------------------------------------------
consensus_12329#0 TGGCGCAATTCCTCGTCGGCGCCGGCATCCCCGACTACATCCTCAACCTCCCCGCCGAGG 540
consensus_12329#1 ------------TCGTCGGCGCCGGCATCCCCGA-TACANCCTCAACCTCCCCGCCGAGG 47
********************** **** ********************
consensus_12329#0 TCATGTCCAGCCCCATGGGCCCCCTCATCATGCCCATGATTCAGAACCTCGAGTCCACGC 600
consensus_12329#1 TCATGTCCAGCCCCATGGGCCCCCTCATCATGCCCATGATTCAGAACCTCGAGTCCACGC 107
************************************************************
consensus_12329#0 TCCGGACCAACGCCGCGCCGCAGGCCACGCAGTTCGTCCCCTCGTCC-GTGCCGCCGCCG 659
consensus_12329#1 TCCGGACCAACGCCGCGCCGCAGGCCACGCAGTTCGTCCCCTCGTCCCGTGCCGCCGCCG 167
*********************************************** ************
consensus_12329#0 CCGCCGCCGCAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAGCAAGAAGACAAGGCG 719
consensus_12329#1 CCGCCGCCGCAGAACAAGCCCGGCGAGGGCTCGTCTTCCTCGAAGCAAGAAGACAAGGCG 227
************************************************************
consensus_12329#0 GCCAAAGCGAAGCAGGGCTCGGCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAG 779
consensus_12329#1 GCCAAAGCGAAGCAGGGCTCGGCGGCTGACCCGCTCGGCGGCGCGAGGGGGAAGGTGCAG 287
************************************************************
consensus_12329#0 GAGGAGGTGATGCGGGAGTTCGCGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAG 839
consensus_12329#1 GAGGAGGTGATGCGGGAGTTCGCGGCGATCATGGCGAGCGGGACGCTGCGGGCGAGCGAG 347
************************************************************
consensus_12329#0 GCGGCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCAACGCCACCATGCAGCAG 899
consensus_12329#1 GCGGCGGCGCTGGCGATGCGGCGGGTCATGGAGCGGCACGGCAACGCCACCATGCAGCAG 407
************************************************************
consensus_12329#0 AGCTAGACGAGAGAGACACACACACCACCATACATTCGACGCGATGATGCGTGTCGCAAT 959
consensus_12329#1 AGCTAGACGAGAGAGACACACACACCACCATACATTCGACGCGATGATGCGTGTCGCAAT 467
************************************************************
consensus_12329#0 CGCAATTACCGAGTTTTTACGGAGTAGTTAACTTCTTTATGAATGAGAAGGTGATTTCTG 1019
consensus_12329#1 CGCAATTACCGAGTTTTTACGGAGTAGTTAACTTCTTTATGAATGAGAAGGTGATTTCTG 527
************************************************************
consensus_12329#0 TAGCGTATTGATTGTTTGTTACTGTGTGTGAACCTGGACTGTTCTGCTTAAATTCGATAA 1079
consensus_12329#1 TAGCGTATTGATTGTTTGTTAAAAAAAAAAAACAAAAAAA-------------------- 567
********************* *** *
consensus_12329#0 TCTTTCTCTTGTCTACTATCCGATGGATGGATAACGATAACCCATTCTCCATTATTGAAT 1139
consensus_12329#1 ------------------------------------------------------------
consensus_12329#0 AGACAAAGCATGTTTGTGGTGTCTGGTGATCAGACTGTTAACTGTGATACTACTATTGTC 1199
consensus_12329#1 ------------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||