cluster # 12337

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Oryza sativa
cluster # 12337 cluster # 12337 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12337#0 length = 1223 sequences # 7
consensus_12337#1 length = 669 sequences # 1

consensus_12337#2 length = 321 sequences # 1
consensus_12337#3 length = 234 sequences # 1

consensusID : consensus_12337#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1223
fasta sequence

                              [CCCGCTTCCATTGCAACCCCACCCCGCCGCACGCCGCCGCATCGATCGGAACCAAACCCTAACCCTAAACCCTAGCCCCCCCACCTCGCCTTCCACCCCCCACGCTCCCATGGCGGGGCGCGGAGGCTACGCGTAGCCACATCGATCGAACACCCTGTATGGATTGAGGTGGGTTTCCCGAGGCATGGGTACAAACCCTAGCCTGCACGAGCTGGCGGCGGGGGCGGCGCCGCGGGGACGCGTGGTGCGTATCCTCGTGCGCGACGCCGACGCCACCGACTCGTCCTCCAGCGAGGACGAGGCGGTTGCGGTGGCGCAGCCTCGGCCGCGGCGGAGGGGTAAGGTGGGTGGTGGTGGTGGTGGTGGTGGGGGCGTGAAGCGCCGCG-TGATGG-AGGCGGGGGCGGGGG-AGGCGAGGCCGACCGCGCGGTTCCGCGGCGTGCGGCAGCGGCCGTGGGGGAGGTTCGCGGCGGAGATCCGCGACCCTCACCTCCGCCGCCGCCTGTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCCGCCGCATACGACGCCGCCAGCGTCCGCCTCCGCGGTTCCAGCGCCGCCACCAACTTCGCCTCCGTCCGCTGCTACTCGCTGCCGCCGGAGCTACCCAAGCCAACTATTTCACCGCCTGAAGCAGCTGTGAGGCCAATCACCTTGCCAATTGGGACAGCTAAGCCGACCCTTCTTCCACGGGTGAAGGA--GG-AAGGTGAGAGCTGTGGCGGTCGGGTCAAGGAGGAGGCCAGTAGCTGTGAGGTCCAGGTGCTTGCTCCGGAGCCAATGTGGACGATGATTTCAGGCA-AGCGTAAGAAGCGATCGGGCTGTGGAACCCGTGTCCGTGCCTTCCATGCTGTGTCCGCCTGTGTGGAAGAAGTTGGCGGGGCCTGAGGGTCCAATTATCCGTAATTACTATCGTTAGCAGCTTTATTGTTATGCAT-AGCATCA-TTGGAAACTTGGTA-TTGTGTAATTTTGGTTAGTATTGAACTTATGATGTGAAGATGACTCTGCA-TGTGACCTGATTTGGTAAGGTTATGATGTGTATATACGGTATGGTTGCTGATATATGTGATGCAGTATGGTAGGCTTCGATAAGGTGTTGTGGAATTAGTATGTTGCATCTAAATAAGACCTTTGATGTGAGATATAGACATGTTCTTCGATTAGAATAAAATATAGTAGAAAATTATTCCAGTAAAAAAAA]

[+] EMBL AK068252             [CCCGCTTCCATTGCAACCCCACCCCGCCGCACGCCGCCGCATCGATCGGAACCAAACCCTAACCCTAAACCCTAGCCCCCCCACCTCGCCTTCCACCCCCCACGCTCCCATGGCGGGGCGCGGAGGCTACGCGTAGCCACATCGATCGAACACCCTGTATGGATTGAGGTGGGTTTCCCGAGGCATGGGTACAAACCCTAGCCTGCACGAGCTGGCGGCGGGGGCGGCGCCGCGGGGACGCGTGGTGCGTATCCTCGTGCGCGACGCCGACGCCACCGACTCGTCCTCCAGCGAGGACGAGGCGGTTGCGGTGGCGCAGCCTCGGCCGCGGCGGAGGGGTAAGGTGGGTGGTGGTGGTGGTGGTGGTGGGGGCGTGAAGCGCCGCG TGATGG AGGCGGGGGCGGGGG AGGCGAGGCCGACCGCGCGGTTCCGCGGCGTGCGGCAGCGGCCGTGGGGGAGGTTCGCGGCGGAGATCCGCGACCCTCACCTCCGCCGCCGCCTGTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCCGCCGCATACGACGCCGCCAGCGTCCGCCTCCGCGGTTCCAGCGCCGCCACCAACTTCGCCTCCGTCCGCTGCTACTCGCTGCCGCCGGAGCTACCCAAGCCAACTATTTCACCGCCTGAAGCAGCTGTGAGGCCAATCACCTTGCCAATTGGGACAGCTAAGCCGACCCTTCTTCCACGGGTGAAGGA  GG AAGGTGAGAGCTGTGGCGGTCGGGTCAAGGAGGAGGCCAGTAGCTGTGAGGTCCAGGTGCTTGCTCCGGAGCCAATGTGGACGATGATTTCAGGCA AGCGTAAGAAGCGATCGGGCTGTGGAACCCGTGTCCGTGCCTTCCATGCTGTGTCCGCCTGTGTGGAAGAAGTTGGCGGGGCCTGAGGGTCCAATTATCCGTAATTACTATCGTTAGCAGCTTTATTGTTATGCAT AGCATCA TTGGAAACTTGGTA TTGTGTAATTTTGGTTAGTATTGAACTTATGATGTGAAGATGACTCTGCA TGTGACCTGATTTGGTAAGGT                                                                                                                                                                           ]
[+] EMBL AK066670             [   GCTTCCATTGCAACCCCACCGCGCCGCACGCCGCCGCATCGATCGGAACCAAACCCTAACCCTAAACCCTAGCCCCCCCACCTCGCCTTCCACCCCCCACGCTCCCATGGCGGGGCGCGGAGGCTACGCGTAGCCACATCGATCGAACACCCTGTATGGATTGAGGTGGGTTTCCCGAGGCATGGGTACAAACCCTAGCCTGCACGAGCTGGCGGCGGGGGCGGCGCCGCGGGGACGCGTGGTGCGTATCCTCGTGCGCGACGCCGACGCCACCGACTCGTCCTCCAGCGAGGACGAGGCGGTTGCGGTGGCGCAGCCTCGGCCGCGGCGGAGGGGTAAGGTGGGTGGTGGTGGTGGTGGTGGTGGGGGCGTGAAGCGCCGCG TGATGG AGGCGGGGGCGGGGG AGGCGAGGCCGACCGCGCGGTTCCGCGGCGTGCGGCAGCGGCCGTGGGGGAGGTTCGCGGCGGAGATCCGCGACCCTCACCTCCGCCGCCGCCTGTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCCGCCGCATACGACGCCGCCAGCGTCCGCCTCCGCGGTTCCAGCGCCGCCACCAACTTCGCCTCCGTCCGCTGCTGCTCGCTGCCGCCGGAGCTACCCAAGCCAACTATTTCACCGCCTGAAGCAGCTGTGAGGCCAATCACCTTGCCAATTGGGACAGCTAAGCCGACCCTTCTTCCACGGGTGAAGGA  GG AAGGTGAGAGCTGTGGCGGTCGGGTCAAGGAGGAGGCCAGTAGCTGTGAGGTCCAGGTGCTTGCTCCGGAGCCAATGTGGACGATGATTTCAGGCA AGCGTAAGGAGCGATCGGGCTGTGGAACCCGTGTCCGTGCCTTCCATGCTGTGTCCGCCTGTGTGGAAGAAGTTGGCGGGGCCTGAGGGTCCAATTATCCGTAATTACTATCGTTAGCAGCTTTATTGTTATGCAT AGCATCA TTGGAAACTTGGTA TTGTGTAATTTTGGTTAGTATTGAACTTATGATGTGAAGATGACTCTGCA TGTGACCTGATTTGGTAAGGTTATGATGTGTATATACGGTATGGTTGCTGATATATGTGATGCAGTATGGTAGGCTTCGATAAGGTGTTGTGGAATTAGTATGTTGCATCTAAATAAGACCTTTGATGTGAGATATAGACATGTTCTTCGATTAGAATAAAATATAGTAGA                     ]
[+] EMBL AU029291             [                              ACGCCGCCGCATCGATCGGAACCAAACCCTAACCCTAAACCCTAGCCCCCCCACCTCGCCTTCCACCCCCCACGCTCCCATGGCGGGGCGCGGAGGCTACGCGTAG CACATCGATCGAACACCCTGTATGGATTGAGGTGGGTTTCCCGAGGCATGGGTACAAACCCTAGCCTGCACGAGCTGGCGGCGGGGGCGGCGCCGCGGGGACG GTGGTGCGTATCCTCGTGCGCGACGNCGACGCCACCGACTCGTCCTCCAGCGAGGACGAGGCGGTTGCGGTGGCGCA CTCCGGCCGCGGCGGAGGGGTAAGGTGGGTGGTGGTTGTGGTNGTTGTGGGGGCGTGAAG GCCGCGTTGATGGAAGGCGGGNGCGGGGGAAGNCGAAGCCGACCGNGCGGTTCCG GGCGTTCGGCAACGGCCtt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL BI306455             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCCGATCACCTTGCCAATTGGGACAGCTAAGCCGACCCTTCTTCCACGGGTGAAGGA  GG AAGGTGAGAGCTGTGGCGGTCGGGTCAAGGAGGAGGCCAGTAGCTGTGAGGTCCAGGTGCTTGCTCCGGAGCCAATGTGGACGATGATTTCAGGCA AGCGTAAGAAGCGATCGGGCTGTGGAACCCGTGTCCGCGCCTTCCATGCTGTGTCCGCCCGTGTGGAAGAAGTTGGCGGGGCCTGAGGGTCCAATTATCCGTAATTACTATCGTTAGCAGCTTTATTGTTATGCAT AGCATCA TTGGAAACTTGGTA TTGTGTAATTTTGGTTAGTATTGAACTTATGATGTGAAGATGACTCTGCA TGTGACCTGATTTGGTAAGGTTATGATGTGTATATACGGTATGGTTGCTGATATATGTGATGCAGTATGGTAGGCTTCGATAAGGTGTTGTGGAATTAGTATGTTGCATCTAAATAAGACCTTTGAT                                                                 ]
[+] EMBL BM420466             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGAAGGAAGGGAAAGGTGAGA CTGT GCGGTCGGGTCAAGGAGGA GCCAGTA CTGTGA GTCACGGTGCTTGCTCCGGAGCCCATGTGGACGATGATTTCAGGCACAGCGTAAGAAGCGATC GGCTGTGGAACCCGTGTCCGCGCCTTCCATGCTGTGTCCGCCCGTGTGGAAGAAGTTGGCGGGGCCTGAGGGTCCCATTATCCGTAATTACTATCGTTAGCAGCTTTATTGTTATGCAT AGCATCACTTGGAAACTTGGTATTTGTGTAATTTTGGTTAGTATTGAACTTATGATGTGAAGATGACTCTGCA TGTGACCTGATTTGGTAAGGTTATGATGTGTATATACGGTATGGTTGCTGATATATGTGATGCAGTATGGTAGGCTTCCATAAGGTTTTGTGGAATTAGTATGTTGCATCTAAATAAGACCTTTGATGTGAGATATAGACATGTTCTTCGATTAGAATAAAATATAGTAGAAAATTATTCCAGTAAAAAAAA]
[+] EMBL AK060543             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCGATCGGGCTGTGGAACCCGTGTCCGTGCCTTCCATGCTGTGTCCGCCTGTGTGGAAGAAGTTGGCGGGGCCTGAGGGTCCAATTATCCGTAATTACTATCGTTAGCAGCTTTATTGTTATGCAT AGCATCA TTGGAAACTTGGTA TTGTGTAATTTTGGTTAGTATTGAACTTATGATGTGAAGATGACTCTGCA TGTGACCTGATTTGGTAAGGTTATGATGTGTATATACGGTAT                                                                                                                                                      ]
[+] EMBL BI795972             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTATGCCTGAGCATCC TTGGAAACTTGGTA TTGTGTAATTTTGGTTAGTATTGAACTTATGATGTGAAGATGACTCTGCACTGTGACCTGATTTGGTAAGGTTATGATGTGTATATCCGGTATGGTTCCTGATATATGTGATCCCGTATGGTAGGCTTCGATAAGGTGTTtg                                                                                                     ]




>consensus_12337#0
CCCGCTTCCATTGCAACCCCACCCCGCCGCACGCCGCCGCATCGATCGGAACCAAACCCT
AACCCTAAACCCTAGCCCCCCCACCTCGCCTTCCACCCCCCACGCTCCCATGGCGGGGCG
CGGAGGCTACGCGTAGCCACATCGATCGAACACCCTGTATGGATTGAGGTGGGTTTCCCG
AGGCATGGGTACAAACCCTAGCCTGCACGAGCTGGCGGCGGGGGCGGCGCCGCGGGGACG
CGTGGTGCGTATCCTCGTGCGCGACGCCGACGCCACCGACTCGTCCTCCAGCGAGGACGA
GGCGGTTGCGGTGGCGCAGCCTCGGCCGCGGCGGAGGGGTAAGGTGGGTGGTGGTGGTGG
TGGTGGTGGGGGCGTGAAGCGCCGCGTGATGGAGGCGGGGGCGGGGGAGGCGAGGCCGAC
CGCGCGGTTCCGCGGCGTGCGGCAGCGGCCGTGGGGGAGGTTCGCGGCGGAGATCCGCGA
CCCTCACCTCCGCCGCCGCCTGTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCCGC
CGCATACGACGCCGCCAGCGTCCGCCTCCGCGGTTCCAGCGCCGCCACCAACTTCGCCTC
CGTCCGCTGCTACTCGCTGCCGCCGGAGCTACCCAAGCCAACTATTTCACCGCCTGAAGC
AGCTGTGAGGCCAATCACCTTGCCAATTGGGACAGCTAAGCCGACCCTTCTTCCACGGGT
GAAGGAGGAAGGTGAGAGCTGTGGCGGTCGGGTCAAGGAGGAGGCCAGTAGCTGTGAGGT
CCAGGTGCTTGCTCCGGAGCCAATGTGGACGATGATTTCAGGCAAGCGTAAGAAGCGATC
GGGCTGTGGAACCCGTGTCCGTGCCTTCCATGCTGTGTCCGCCTGTGTGGAAGAAGTTGG
CGGGGCCTGAGGGTCCAATTATCCGTAATTACTATCGTTAGCAGCTTTATTGTTATGCAT
AGCATCATTGGAAACTTGGTATTGTGTAATTTTGGTTAGTATTGAACTTATGATGTGAAG
ATGACTCTGCATGTGACCTGATTTGGTAAGGTTATGATGTGTATATACGGTATGGTTGCT
GATATATGTGATGCAGTATGGTAGGCTTCGATAAGGTGTTGTGGAATTAGTATGTTGCAT
CTAAATAAGACCTTTGATGTGAGATATAGACATGTTCTTCGATTAGAATAAAATATAGTA
GAAAATTATTCCAGTAAAAAAAA

consensusID : consensus_12337#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [GCCGCCGCATCGATCGGAACCAAACCCTAACCCTAAACCCTAGCCCCCCCACCTCGCCTTCCACCCCCCACGCTCCCATGGCGGGGCGCGGAGGCTACGCGTAGCCACATCGATCGAACACCCTGTATGGATTGAGGTGGGTTTCCCGAGGCATGGGTACAAACCCTAGCCTGCACGAGCTGGCGGCGGGGGCGGCGCCGCGGGGACGCGTGGTGCGTATCCTCGTGCGCGACGCCGACGCCACCGACTCTTCCTCCAGCGAGGACGAGGCGGTTGCGGTGGCGCAGCCTCTGCCGCGGCGGAGGGGTAAGGTGGGTGGTGGTGGTGGTCGGGCGGTGAAATATTTGGCTTGGGTAGCTCCGGCGGCAGCGAGTAACAGCGGACGGAGGCAAATTTGGTGGCGGCGCTGGAACCGCGGAGGCGGACACTGGCGGCGTCGTATGCGGCGGCGGCCTCCTCAGCGGTGTCGAAGGTGCCGAGCCACAGGCGGCGGCGGAGGTGAGGGTCGCGGATATCCACCGGGAACCTCCCACACGGGGGCTGCCGCACTCCGCGGAAACGCTCGGTCAGCCTCGCTTCCCCCGCCCCCGGCTCCATCACGCGGGGCTTCACGTCCCCACCACCACCATCACTACCACCGACCTTACCCCTCCGCCGCGGCCGAGGCTG]

[+] EMBL CB663191             [GCCGCCGCATCGATCGGAACCAAACCCTAACCCTAAACCCTAGCCCCCCCACCTCGCCTTCCACCCCCCACGCTCCCATGGCGGGGCGCGGAGGCTACGCGTAGCCACATCGATCGAACACCCTGTATGGATTGAGGTGGGTTTCCCGAGGCATGGGTACAAACCCTAGCCTGCACGAGCTGGCGGCGGGGGCGGCGCCGCGGGGACGCGTGGTGCGTATCCTCGTGCGCGACGCCGACGCCACCGACTCTTCCTCCAGCGAGGACGAGGCGGTTGCGGTGGCGCAGCCTCTGCCGCGGCGGAGGGGTAAGGTGGGTGGTGGTGGTGGTCGGGCGGTGAAATATTTGGCTTGGGTAGCTCCGGCGGCAGCGAGTAACAGCGGACGGAGGCAAATTTGGTGGCGGCGCTGGAACCGCGGAGGCGGACACTGGCGGCGTCGTATGCGGCGGCGGCCTCCTCAGCGGTGTCGAAGGTGCCGAGCCACAGGCGGCGGCGGAGGTGAGGGTCGCGGATATCCACCGGGAACCTCCCACACGGGGGCTGCCGCACTCCGCGGAAACGCTCGGTCAGCCTCGCTTCCCCCGCCCCCGGCTCCATCACGCGGGGCTTCACGTCCCCACCACCACCATCACTACCACCGACCTTACCCCTCCGCCGCGGCCGAGGCTG]




>consensus_12337#1
GCCGCCGCATCGATCGGAACCAAACCCTAACCCTAAACCCTAGCCCCCCCACCTCGCCTT
CCACCCCCCACGCTCCCATGGCGGGGCGCGGAGGCTACGCGTAGCCACATCGATCGAACA
CCCTGTATGGATTGAGGTGGGTTTCCCGAGGCATGGGTACAAACCCTAGCCTGCACGAGC
TGGCGGCGGGGGCGGCGCCGCGGGGACGCGTGGTGCGTATCCTCGTGCGCGACGCCGACG
CCACCGACTCTTCCTCCAGCGAGGACGAGGCGGTTGCGGTGGCGCAGCCTCTGCCGCGGC
GGAGGGGTAAGGTGGGTGGTGGTGGTGGTCGGGCGGTGAAATATTTGGCTTGGGTAGCTC
CGGCGGCAGCGAGTAACAGCGGACGGAGGCAAATTTGGTGGCGGCGCTGGAACCGCGGAG
GCGGACACTGGCGGCGTCGTATGCGGCGGCGGCCTCCTCAGCGGTGTCGAAGGTGCCGAG
CCACAGGCGGCGGCGGAGGTGAGGGTCGCGGATATCCACCGGGAACCTCCCACACGGGGG
CTGCCGCACTCCGCGGAAACGCTCGGTCAGCCTCGCTTCCCCCGCCCCCGGCTCCATCAC
GCGGGGCTTCACGTCCCCACCACCACCATCACTACCACCGACCTTACCCCTCCGCCGCGG
CCGAGGCTG

consensusID : consensus_12337#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 321
fasta sequence

                              [AGAAGCTGTGNCGGTCGGGTCAAGGAGGAGGCCAGTAGCTGTGAGGTCCAGGTGCTTGCTCCGGAGCCAATGTGGACGATGATTTCAGGCAAGCGTAAGAAGCGATCGGGCTGTGGAACCCGTGTCCGTGCCTTCCATGCTGTGTCCNCCTGTGTGGAAGAAGTTGGCGGGGCCTGAGGGTCCAATTATCCGTAATTACTATCGTTAGCAGCTTTATTGTTATGCATAGCATCATTGGAAACTTGGTATTGTGTAATTTTGGTTAGTATTGAANTTATGATGTGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU029292             [AGAAGCTGTGNCGGTCGGGTCAAGGAGGAGGCCAGTAGCTGTGAGGTCCAGGTGCTTGCTCCGGAGCCAATGTGGACGATGATTTCAGGCAAGCGTAAGAAGCGATCGGGCTGTGGAACCCGTGTCCGTGCCTTCCATGCTGTGTCCNCCTGTGTGGAAGAAGTTGGCGGGGCCTGAGGGTCCAATTATCCGTAATTACTATCGTTAGCAGCTTTATTGTTATGCATAGCATCATTGGAAACTTGGTATTGTGTAATTTTGGTTAGTATTGAANTTATGATGTGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12337#2
AGAAGCTGTGNCGGTCGGGTCAAGGAGGAGGCCAGTAGCTGTGAGGTCCAGGTGCTTGCT
CCGGAGCCAATGTGGACGATGATTTCAGGCAAGCGTAAGAAGCGATCGGGCTGTGGAACC
CGTGTCCGTGCCTTCCATGCTGTGTCCNCCTGTGTGGAAGAAGTTGGCGGGGCCTGAGGG
TCCAATTATCCGTAATTACTATCGTTAGCAGCTTTATTGTTATGCATAGCATCATTGGAA
ACTTGGTATTGTGTAATTTTGGTTAGTATTGAANTTATGATGTGAAGAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_12337#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 234
fasta sequence

                              [GGAACCCGTGTCCGTGCCTTCCATGCTGTGTCCGCCTGTGTGGAAGAAGTTGCGGGGCCTGAGGGTCCAATTATCCGTAATTACTATCGTTAGCAGCTTTATTGTTATGCATAGCATCATTGGAAACTTGGTATTGTGTAATTTTGGTTAGTATTGAACTTATGATGTGAAGATGACTCTGCATGTGACCTGATTTGGTAAGGCTTATAACTACANTATCGTCNTAGTGGTAAA]

[+] EMBL BI805662             [GGAACCCGTGTCCGTGCCTTCCATGCTGTGTCCGCCTGTGTGGAAGAAGTTGCGGGGCCTGAGGGTCCAATTATCCGTAATTACTATCGTTAGCAGCTTTATTGTTATGCATAGCATCATTGGAAACTTGGTATTGTGTAATTTTGGTTAGTATTGAACTTATGATGTGAAGATGACTCTGCATGTGACCTGATTTGGTAAGGCTTATAACTACANTATCGTCNTAGTGGTAAA]




>consensus_12337#3
GGAACCCGTGTCCGTGCCTTCCATGCTGTGTCCGCCTGTGTGGAAGAAGTTGCGGGGCCT
GAGGGTCCAATTATCCGTAATTACTATCGTTAGCAGCTTTATTGTTATGCATAGCATCAT
TGGAAACTTGGTATTGTGTAATTTTGGTTAGTATTGAACTTATGATGTGAAGATGACTCT
GCATGTGACCTGATTTGGTAAGGCTTATAACTACANTATCGTCNTAGTGGTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12337#2      ------------------------------------------------------------
consensus_12337#3      ------------------------------------------------------------
consensus_12337#0      CCCGCTTCCATTGCAACCCCACCCCGCCGCACGCCGCCGCATCGATCGGAACCAAACCCT 60
consensus_12337#1      ------------------------------------------------------------
                                                                                   

consensus_12337#2      ------------------------------------------------------------
consensus_12337#3      ------------------------------------------------------------
consensus_12337#0      AACCCTAAACCCTAGCCCCCCCACCTCGCCTTCCACCCCCCACGCTCCCATGGCGGGGCG 120
consensus_12337#1      ------------------------------------------------------------
                                                                                   

consensus_12337#2      ------------------------------------------------------------
consensus_12337#3      ------------------------------------------------------------
consensus_12337#0      CGGAGGCTACGCGTAGCCACATCGATCGAACACCCTGTATGGATTGAGGTGGGTTTCCCG 180
consensus_12337#1      ------------------------------------------------------------
                                                                                   

consensus_12337#2      ------------------------------------------------------------
consensus_12337#3      ------------------------------------------------------------
consensus_12337#0      AGGCATGGGTACAAACCCTAGCCTGCACGAGCTGGCGGCGGGGGCGGCGCCGCGGGGACG 240
consensus_12337#1      ------------------------------------------------------------
                                                                                   

consensus_12337#2      ------------------------------------------------------------
consensus_12337#3      ------------------------------------------------------------
consensus_12337#0      CGTGGTGCGTATCCTCGTGCGCGACGCCGACGCCACCGACTCGTCCTCCAGCGAGGACGA 300
consensus_12337#1      ------------------------------------------------------------
                                                                                   

consensus_12337#2      ------------------------------------------------------------
consensus_12337#3      ------------------------------------------------------------
consensus_12337#0      GGCGGTTGCGGTGGCGCAGCCTCGGCCGCGGCGGAGGGGTAAGGTGGGTGGTGGTGGTGG 360
consensus_12337#1      ------------------------------------------------------------
                                                                                   

consensus_12337#2      ------------------------------------------------------------
consensus_12337#3      ------------------------------------------------------------
consensus_12337#0      TGGTGGTGGGGGCGTGAAGCGCCGCGTGATGGAGGCGGGGGCGGGGGAGGCGAGGCCGAC 420
consensus_12337#1      ------------------------------------------------------------
                                                                                   

consensus_12337#2      ------------------------------------------------------------
consensus_12337#3      ------------------------------------------------------------
consensus_12337#0      CGCGCGGTTCCGCGGCGTGCGGCAGCGGCCGTGGGGGAGGTTCGCGGCGGAGATCCGCGA 480
consensus_12337#1      ------------------------------------------------------------
                                                                                   

consensus_12337#2      ------------------------------------------------------------
consensus_12337#3      ------------------------------------------------------------
consensus_12337#0      CCCTCACCTCCGCCGCCGCCTGTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCCGC 540
consensus_12337#1      ------------------------------------------------------------
                                                                                   

consensus_12337#2      ------------------------------------------------------------
consensus_12337#3      ------------------------------------------------------------
consensus_12337#0      CGCATACGACGCCGCCAGCGTCCGCCTCCGCGGTTCCAGCGCCGCCACCAACTTCGCCTC 600
consensus_12337#1      ------------------------------------------------------------
                                                                                   

consensus_12337#2      ------------------------------------------------------------
consensus_12337#3      ------------------------------------------------------------
consensus_12337#0      CGTCCGCTGCTACTCGCTGCCGCCGGAGCTACCCAAGCCAACTATTTCACCGCCTGAAGC 660
consensus_12337#1      ----------------------------------GCCGCCGCATCGATCGGAACCAAACC 26
                                                                                   

consensus_12337#2      ------------------------------------------------------------
consensus_12337#3      ------------------------------------------------------------
consensus_12337#0      AGCTGTGAGGCCAATCACCTTGCCAATTGGGACAGCTAAGCCGACCCTTCTTCCACGGGT 720
consensus_12337#1      CTAACCCTAAACCCTAGCCCCCCCACCTCGCCTTCCACCCCCCACGCTCCCATGGCGGGG 86
                                                                                   

consensus_12337#2      -------------AGAAGCTGTGNCGGTCGGGTCAAGGAGGAGGCCAGTAGCTGTGAGGT 47
consensus_12337#3      ------------------------------------------------------------
consensus_12337#0      GAAGGAGGAAGGTGAGAGCTGTGGCGGTCGGGTCAAGGAGGAGGCCAGTAGCTGTGAGGT 780
consensus_12337#1      CGCGGAGGCTACGCGTAGCCACATCGATCGAACACCCTGTATGGATTGAGGTGGGTTTCC 146
                                                                                   

consensus_12337#2      CCAGGTGCTTGCTCCGGAGCCAATGTGGACGATGATTTCAGGCAAGCG-TAAGAAGCGAT 106
consensus_12337#3      ------------------------------------------------------------
consensus_12337#0      CCAGGTGCTTGCTCCGGAGCCAATGTGGACGATGATTTCAGGCAAGCG-TAAGAAGCGAT 839
consensus_12337#1      CGAGGCATGGGTACAAACCCTAGCCTGCACGAGCTGGCGGCGGGGGCGGCGCCGCGGGGA 206
                                                                                   

consensus_12337#2      CGGGCTGTG-GAACCCGTGTCCGTGCCTTCCATGCTGTGTCCNCCTGTGTGGAAGAAGTT 165
consensus_12337#3      --------G-GAACCCGTGTCCGTGCCTTCCATGCTGTGTCCGCCTGTGTGGAAGAAGTT 51
consensus_12337#0      CGGGCTGTG-GAACCCGTGTCCGTGCCTTCCATGCTGTGTCCGCCTGTGTGGAAGAAGTT 898
consensus_12337#1      CGCGTGGTGCGTATCCTCGTGCGCGACGCCGACGCCACCGACTCTTCCTCCAGCGAGGAC 266
                               * * * **  ** ** * *  * * **      * * *        ** *  

consensus_12337#2      GGCGGGGCCTGAGGGTCCAATTATCCGTAATTACTATCG--TTAGCAGCTTTATTGTTAT 223
consensus_12337#3      G-CGGGGCCTGAGGGTCCAATTATCCGTAATTACTATCG--TTAGCAGCTTTATTGTTAT 108
consensus_12337#0      GGCGGGGCCTGAGGGTCCAATTATCCGTAATTACTATCG--TTAGCAGCTTTATTGTTAT 956
consensus_12337#1      GAGGCGGTTGCGGTGGCGCAGCCTCTGCCGCGGCGGAGGGGTAAGGTGGGTGGTGGTGGT 326
                       *  * **     * * *  *   ** *      *    *  * **  *  *  * **  *

consensus_12337#2      GCATAGCATCATTGGAAACTTGGTATTGTGTAATTTTGGT--TAGTATTGAANTTATGAT 281
consensus_12337#3      GCATAGCATCATTGGAAACTTGGTATTGTGTAATTTTGGT--TAGTATTGAACTTATGAT 166
consensus_12337#0      GCATAGCATCATTGGAAACTTGGTATTGTGTAATTTTGGT--TAGTATTGAACTTATGAT 1014
consensus_12337#1      G-GTCGGGCGGTGAAATATTTGGC-TTGGGTAGCTCCGGCGGCAGCGAGTAACAGCGGAC 384
                       *  * *     *   * * ****  *** ***  *  **    **     **     ** 

consensus_12337#2      GTGAAGAAAA----AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------- 321
consensus_12337#3      GTGAAGATGACTCTGCATGTGACCTGATTTGGTAAGGCTTATAACTACANTATCGTCNTA 226
consensus_12337#0      GTGAAGATGACTCTGCATGTGACCTGATTTGGTAAGGTTATGATGTGTATATACGGTATG 1074
consensus_12337#1      GGAGGCAAATTTGGTGGCGGCGCTGGAACCGCGGAGGCGGACACTGGCGGCGTCGTATGC 444
                       *     *                   *       *       *                 

consensus_12337#2      ------------------------------------------------------------
consensus_12337#3      GTGGTAAA---------------------------------------------------- 234
consensus_12337#0      GTTGCTGATATATGTGATGCAGTATGGTAGGCTTCGATAAGGTGTTGTGGAATTAGTATG 1134
consensus_12337#1      GGCGGCGGCCTCCTCAGCGGTGTCGAAGGTGCCGAGCCACAGGCGGCGGCGGAGGTGAGG 504
                                                                                   

consensus_12337#2      ------------------------------------------------------------
consensus_12337#3      ------------------------------------------------------------
consensus_12337#0      TTGCATCTAAATAAGACCTTTGATGTGAGATATAGACATGTTCTTCGATTAGAATAAAAT 1194
consensus_12337#1      GTCGCGGATATCCACCGGGAACCTCCCACACGGGGGCTGCCGCACTCCGCGGAAACGCTC 564
                                                                                   

consensus_12337#2      ------------------------------------------------------------
consensus_12337#3      ------------------------------------------------------------
consensus_12337#0      ATAGTAGAAAATTATTCCAGTAAAAAAAA------------------------------- 1223
consensus_12337#1      GGTCAGCCTCGCTTCCCCCGCCCCCGGCTCCATCACGCGGGGCTTCACGTCCCCACCACC 624
                                                                                   

consensus_12337#2      ---------------------------------------------
consensus_12337#3      ---------------------------------------------
consensus_12337#0      ---------------------------------------------
consensus_12337#1      ACCATCACTACCACCGACCTTACCCCTCCGCCGCGGCCGAGGCTG 669