Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12338 cluster # 12338       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12338#0 length = 2131 sequences # 8  
consensus_12338#1 length = 770 sequences # 1  
consensus_12338#2 length = 281 sequences # 1  

consensusID : consensus_12338#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2131
fasta sequence
                              [GTTCGGCCCAGGGGATGGACGCTTGTCTCCTCCTCTCTCCTCCTCGCCGCCTCCTCTCCTCGCGTGCCTAGCTTCCCTTCCCTTCCCTTCCCTTCTTCCCTACTCCTCCCACTCCACTCCACGCGCACCTCGCCGCGTCCCTGATCTGATTGATTGATGCCGGGGCGGCCGTGATGGCGGCGGGAGCAGGAGCGGGCGGCGGGGGCGGGGAGGGCGACAGCAACGGGGGAGGCACCTCCCCGGGTGGCGTGTCGGCGGCGGCGCCGGCGATCGGGCCCCACCACCTCGGGGTTGCCGCCGCGGAAGAAGCAATGTGGCAAATGACTTTAGGAGGAGGAGAGTCTATGGAGTCCACTCCATACCCTGAGCGGATAGGAGAGCCAGACTGCAGTTATTATATGAGGACTGGACTATGTAGGTTTGGGATGACCTGCAAATTCAATCACCCCCCAAATAGAAAACTGGCTGTTGCTGCTGCAAGGATGAATGGAGAGTATCCTTATAGAGTTGGTCAACCTGAGTGTCAATACTACTTGAAAACTGGAACGTGCAAGTTTGGTGCAACATGCAAGTTTCATCACCCCAGGGAGAAGGCTGCACTTGCAAACCGTGTACAGTTAAATGTTCTAGGCTACCCGATGCGTCCGAATGAGAAGGAATGTGCTTACTACTTAAGAACAGGGCAGTGTAAATTTGCAAGCACATGTAAGTTTCATCATCCACAGCCCTCTAATACAATGGTTGCTGTACGGAACTCTATGTATTCACCTGGACAGTCTGCAACCTCTCCTGGTCAACATACTTATCCTGGGGCCGTAACAAACTGGACCTTGTCAAGATCTGCATCATTTATTGCAAGCCCCAGGTGGCCTGGCCATTCAGGCTATGCACAAGTAATCGTTCCCCAGGGCCTTGTTCAAGTTCCAGGGTGGAATCCTTATGCTGCACAAATGGGCTCTTCGTCTCCAGATGACCAGCAACGAACACCTGTAACCACTCAATACTATGGCTCACGTCAGAGTGAAACAGGTGGTATGGGAGATCATGGAATGTATCAGTCATACCAAGGAGGCTCTGTTCCAGTCGGTGTTTACACAGTACAAGGGGAAAATATATTTCCTGAGAGACCTGATCAACCAGAGTGTCAATTCTACATGAAAACTGGAGACTGTAAGTTTGGTGCTGTTTGCAAGTTTCATCACCCCAAGGAGCGACTGGTACCTGCTCCAAACTGTGCATTGAATTCACTTGGTCTTCCACTACGCCCGGGAGAACCTGTCTGCACATTCTATTCTCGTTACGGGATCTGCAAGTTTGGTCCTAATTGCAAATTTGACCATCCTATGGGAACCCTTATGTATGGAAGTGCAACATCACCAAGAGGTGATGTGTCATCTATGCATTATCAGTTGTCACCCTCACCAGGGCATCCAGGAATATTGCTTGATGGAGGCTCTGGAAGGTCTCACCGGGTTCCTCAGTCTGATTCCCAGCAAATACCCTCTGGCGATGGGAATGCCGAGAGAGAGGCATCATAAGCCCTCCTCGGCCTTTCCTCATGCTACCTCCCATTCTTGACTCTTCAGTAATTATCTCCAACAAATTCAAAGAGCTGAAGCTGTACAGGTCCTTGTC-CATCCTTTTTCTGCTTCTCTGAATCACCACACACCGGTGCTTCATCATGTATCACATTCAGGCAGG-AAAATGTTCTTGCTTG-CCCCTCCCCGCCCCAATTCCTGCATGCCCC--GTGAAAATAAATGGGGCAACCA-TTCTTATTT-ATCCCT-ACCATATACACACACACAAGATACACTCACCTCCTGACACTCGGTTCGGCGAATGATGTGCCTTGATCCCTCTGTTGTAGTTATACAGGTGGCCTGCAGTGGACAAAGCTTACCAAACTGACTGTATTGGGGATTCTGTTTCGTTTTGCTCTTCTTCCTTTCTA-GGCA-TTGGGGAGTAAGCGCAGGACTTGCTGCTTGTGCAAGTGTGCATGTTGAAAACA-ACGGAAATAATGCTCTGCCTTAATTGTAATAATTGTAATTTATGTTCTACCGACTGAATTATTTGTTCAATAAAAGAATCGGCCATGGCTGCGCGAGCTGGGTCA-TTGTTCTCGACAAAAAAAAAA]

[+] EMBL AK111511             [GTTCGGCCCAGGGGATGGACGCTTGTCTCCTCCTCTCTCCTCCTCGCCGCCTCCTCTCCTCGCGTGCCTAGCTTCCCTTCCCTTCCCTTCCCTTCTTCCCTACTCCTCCCACTCCACTCCACGCGCACCTCGCCGCGTCCCTGATCTGATTGATTGATGCCGGGGCGGCCGTGATGGCGGCGGGAGCAGGAGCGGGCGGCGGGGGCGGGGAGGGCGACAGCAACGGGGGAGGCACCTCCCCGGGTGGCGTGTCGGCGGCGGCGCCGGCGATCGGGCCCCACCACCTCGGGGTTGCCGCCGCGGAAGAAGCAATGTGGCAAATGACTTTAGGAGGAGGAGAGTCTATGGAGTCCACTCCATACCCTGAGCGGATAGGAGAGCCAGACTGCAGTTATTATATGAGGACTGGACTATGTAGGTTTGGGATGACCTGCAAATTCAATCACCCCCCAAATAGAAAACTGGCTGTTGCTGCTGCAAGGATGAATGGAGAGTATCCTTATAGAGTTGGTCAACCTGAGTGTCAATACTACTTGAAAACTGGAACGTGCAAGTTTGGTGCAACATGCAAGTTTCATCACCCCAGGGAGAAGGCTGCACTTGCAAACCGTGTACAGTTAAATGTTCTAGGCTACCCGATGCGTCCGAATGAGAAGGAATGTGCTTACTACTTAAGAACAGGGCAGTGTAAATTTGCAAGCACATGTAAGTTTCATCATCCACAGCCCTCTAATACAATGGTTGCTGTACGGAACTCTATGTATTCACCTGGACAGTCTGCAACCTCTCCTGGTCAACATACTTATCCTGGGGCCGTAACAAACTGGACCTTGTCAAGATCTGCATCATTTATTGCAAGCCCCAGGTGGCCTGGCCATTCAGGCTATGCACAAGTAATCGTTCCCCAGGGCCTTGTTCAAGTTCCAGGGTGGAATCCTTATGCTGCACAAATGGGCTCTTCGTCTCCAGATGACCAGCAACGAACACCTGTAACCACTCAATACTATGGCTCACGTCAGAGTGAAACAGGTGGTATGGGAGATCATGGAATGTATCAGTCATACCAAGGAGGCTCTGTTCCAGTCGGTGTTTACACAGTACAAGGGGAAAATATATTTCCTGAGAGACCTGATCAACCAGAGTGTCAATTCTACATGAAAACTGGAGACTGTAAGTTTGGTGCTGTTTGCAAGTTTCATCACCCCAAGGAGCGACTGGTACCTGCTCCAAACTGTGCATTGAATTCACTTGGTCTTCCACTACGCCCGGGAGAACCTGTCTGCACATTCTATTCTCGTTACGGGATCTGCAAGTTTGGTCCTAATTGCAAATTTGACCATCCTATGGGAACCCTTATGTATGGAAGTGCAACATCACCAAGAGGTGATGTGTCATCTATGCATTATCAGTTGTCACCCTCACCAGGGCATCCAGGAATATTGCTTGATGGAGGCTCTGGAAGGTCTCACCGGGTTCCTCAGTCTGATTCCCAGCAAATACCCTCTGGCGATGGGAATGCCGAGAGAGAGGCATCATAAGCCCTCCTCGGCCTTTCCTCATGCTACCTCCCATTCTTGACTCTTCAGTAATTATCTCCAACAAATTCAAAGAGCTGAAGCTGTACAGGTCCTTGTC CATCCTTTTTCTGCTTCTCTGAATCACCACACACCGGTGCTTCATCATGTATCACATTCAGGCAGG AAAATGTTCTTGCTTG CCCCTCCCCGCCCCAATTCCTGCATGCCCC  GTGAAAATAAATGGGGCAACCA TTCTTATTT ATCCCT ACCATATATACACACACAAGATACACTCACCTCCTGACACTCGGTTCGGCGAATGATGTGCCTTGATCCCTCTGTTGTAGTTATACAGGTGGCCTGCAGTGGACAAAGCTTACCAAACTGACTGTATTGGGGATTCTGTTTCGTTTTGCTCTTCTTCCTTTCTA GGCA TTGGGGAGTAAGCGCAGGACTTGCTGCTTGTGCAAGTGTGCATGTTGAAAACA ACGGAAATAATGCTCTGCCTTAATTGTAATAATTGTAATTTATGTTCTACCAACTGAATTATTTGTTCAATAAAAGAATCGGCCATGGCTGCGCGATCTGGGTC                       ]
[+] EMBL CB640085             [                                                      TCTCCTCGCGTGCCTAGCTTCCCTTCCCTTCCCTTCCCTTCTTCCCTACTCCTCCCACTCCACTCCACGCGCACCTCGCCGCGTCCCTGATCTGATTGATTGATGCCGGGGCGGCCGTGATGGCGGCGGGAGCAGGAGCGGGCGGCGGGGGCGGGGAGGGCGACAGCAACGGGGGAGGCACCTCCCCGGGTGGCGTGTCGGCGGCGGCGCCGGCGATCGGGCCCCACCACCTCGGGGTTGCCGCCGCGGAAGAAGCAATGTGGCAAATGACTTTAGGAGGAGGAGAGTCTATGGAGTCCACTCCATACCCTGAGCGGATAGGAGAGCCAGACTGCAGTTATTATATGAGGACTGGACTATGTAGGTTTGGGATGACCTGCAAATTCAATCACCCCCCAAATAGAAAACTGGCTGTTGCTGCTGCAAGGATGAATGGAGAGTATCCTTATAGAGTTGGTCAACCTGAGTGTCAATACTACTTGAAAACTGGAACGTGCAAGTTTGGTGCAACATGCAAGTTTCATCACCCCAGGGAGAAGGCTGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB096261             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   nggacgagACAAGGGGAAAATATATTTCCTGAGAGACCTGATCAACCAGAGTGTCAATTCTACATGAAAACTGGAGACTGTAAGTTTGGTGCTGTTTGCAAGTTTCATCACCCCAAGGAGCGACTGGTACCTGCTCCAAACTGTGCATTGAATTCACTTGGTCTTCCACTACGCCCGGGAGAACCTGTCTGCACATTCTATTCTCGTTACGGGATCTGCAAGTTTGGTCCTAATTGCAAATTTGACCATCCTATGGGAACCCTTATGTATGGAAGTGCAACATCACCAAGAGGTGATGTGTCATCTATGCATTATCAGTTGTCACCCTCACCAGGGCATCCAGGAATATTGCTTGATGGAGGCTCTGGAAGGTCTCACCGGGTTCCTCAGTCTGATTCCCAGCAAATACCCTCTGGCGATGGGAATGCCGAGAGAGAGGCATCATAAGCCTTCCTCGGCCTTTCCTCATGCTACCTCCCATTCTTGACTCTTCAGTAATTATCTCCAACAAATTCAAAGAGCTGAAGCTGTACAGGTCCTTGTC CATCCTTTTTCTGCTTCTCTGAATCACCACACACCGGTGCTTCATCATGTATCACATTCAGGCAGGAAAAATGGTCTTGCTCGNCCCTTCCCGGCCCAAATTCCTGCATGCCCCCGGNGAAAATAAATGGGGCAACCATTTCTTANTT A                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BF430446             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AACATCACCAAGAGGTGATGTGTCATCTATGCATTATCAGTTGTCACCCTCACCAGGGCATCCAGGAATATTGCTTGATGGAGGCTCTGGAAGGTCTCACCGGGTTCCTCAGTCTGATTCCCAGCAAATACCCTCTGGCGATGGGAATGCCGAGAGAGAGGCATCATAAGCCCTCCTCGGCCTTTCCTCATGCTACCTCCCATTCTTGACTCTTCAGTAATTATCTCCAACAAATTCAAAGAGCTGAAGCTGTACAGGTCCTTGTC CATCCTTTTTCTGCTTCTCTGAATCACCACACACCGGTGCTTCATCATGTATCACATTCAGGCAGG AAAATGTTCTTGCTTG CCCCTCCCCGCCCCAATTCCTGCATGCCCC  GTGAAAATAAATGGGGCAACCA TTCTTATTT ATCCCT ACCATATATACACACACAAGATACACTCACCTCCTGACACTCGGTTCGGCGAATGATGTGCCTTGATCCCTCTGTTGTAGTTATACAGGTGGCCTGCAGTGGACAAAGCTTACCAAACTGACTGTATTGGGGATTCTGTTTCGTTTTGCTCTTCTTCCTTTCTA GGCA TTGGGGAGTAAGCGCAAGACTTGCTGCTTGTGCAAGTGTGCATGTTGAAAACA ACGGAAATAATGCTCT                                                                                                               ]
[+] EMBL BI808222             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGTAATTATCTCCCACAAATTCAAAGAGCTGAACCTGTACAGGTCCTTGTCACATCCTTTTTCTGCTTCTCTGAACCACCACACACCGGTGCTTCATCATGTATCACATTCAGGCAGG AAAATGTTCTTGCTTG CCCCTCCCCGCCCCAATTCCTGCATGCCCC  GTGAAAATAAATGGGGCAACCA TTCTTATTT ATCCCT ACCATATACACACACACAAGATACACTCACCTCCTGACACTCGGTTCGGCGAATGATGT CCTTGATCCCTCTGTTGTAGTTATACAGGTGGCCTGCAGTGGACAAAGCTTACCAAACTGACTGTATTGGGGATTCTGTTTCGTTTTGCTCTTCTTCCTTTCTA GGCA TTGGGGAGTAAGCGCAGGACTTGCTGCTTGTGCAAGTGTGCATGTTGAAAACA ACGGAAATAATGCTCTGCCTTAATTGTAATAATTGTAATTTATGTTCTACCGACTGAATTATTTGTTCAATAAAAGAATCGGCCATGGCTGCGCGAGCTGGGTCATTTGTTCTCGACAAAAAAA   ]
[+] EMBL BI808267             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTTCTGCTTCTCTGAACCACCACACACCGGTGCTTCATCATGTATCACATTCA GCAGG AAAATGTTCTTGCTTG CCCCTCCCCGCCCCAATTCCTGCATGCCCC  GTGAAAATAAAT GGGCAACCA TTCTTATTT ATCCCT ACCATATACACACACACAAGATACACTCACCTCCTGACACTCGGTTC GCGAATGATGTGCCTTGATCCCTCTGTTGTAGTTATACAGGTGGCCT CAGTGGACAAAGCTTACC AACTGACTGTATTGGGGATTCTGTTTCGTTTTGCTCTTCTTCCTTTCTA  GCA TTGGGGAGTAAGCGCAGGACTTGCTGCTTGTGCAAGTGTGCATGTTGAAAAC  ACGGAAATAATGCTCTGCCTTAATTGTAATAATTGTAATTTATGTTCTACCGACTGAATTATTTGTTCAATAAAAGAATCGGCCATGGCTGCGCGAGCTGGGTCA TTGTTCTCGACAAAAAAAAAA]
[+] EMBL BM038197             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ccgTCCTGCATGCCCC  GTGAAAATAAATGGGGCAACCA TTCTTATTT ATCCCT ACCATATACACACACACAAGATACACTCACCTCCTGACACTCGGTTCGGCGAATGATGTGCCTTGATCCCTCTGTTGTAGTTATACAGGTGGCCTGCAGTGGACAAAGCTTACCCAACTGACTGTATTGGGGATTCTGTTTCGTTTTGCTCTTCTTCCTTTCTA GCCA TTGGGGAGTAAGCGCAGGACTTGCTGCTTGTGCAAGTGTGCATGTTGAAAACA ACGGAAATAATGCTCTGCCTTAATTGTAATAATTGTAATTTATGTTCTACCGACTGAATTATTTGTTCAATAAAAGAATCGGCCATGGCTGCGCGNNCTGGGTCA TTGTTCTCGACAAAAAAAA  ]
[+] EMBL BQ906712             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTTATTTGATCCCTGACCATATACACACACACAAGATACACTCACCTCCTGACACTCGGTTCGGCGAATGATGTGCCTTGATCCCTCTGTTGTAGTTATACAGGTGGCCTGCAGTGGACAAAGCTTACCAAACTGACTGTATTGGGGATTCTGTTTCGTTTTGCTCTTCTTCCTTTCTACGGCACTTGGGGAGTAAGCGCAGGACTTGCTGCTTGTGCAAGTGTGCATGTTGAAAACACACGGAAATAATGCTCTGCCTTAATTGTAATAATTGTAATTTATGTTCTACCGACTGAATTATTTGTTCAATAAAAGAATCGGCCATGGCTGCGCGAGCTGGGTCA TTGTTCTCGACATTGAAAAAA]


>consensus_12338#0 GTTCGGCCCAGGGGATGGACGCTTGTCTCCTCCTCTCTCCTCCTCGCCGCCTCCTCTCCT CGCGTGCCTAGCTTCCCTTCCCTTCCCTTCCCTTCTTCCCTACTCCTCCCACTCCACTCC ACGCGCACCTCGCCGCGTCCCTGATCTGATTGATTGATGCCGGGGCGGCCGTGATGGCGG CGGGAGCAGGAGCGGGCGGCGGGGGCGGGGAGGGCGACAGCAACGGGGGAGGCACCTCCC CGGGTGGCGTGTCGGCGGCGGCGCCGGCGATCGGGCCCCACCACCTCGGGGTTGCCGCCG CGGAAGAAGCAATGTGGCAAATGACTTTAGGAGGAGGAGAGTCTATGGAGTCCACTCCAT ACCCTGAGCGGATAGGAGAGCCAGACTGCAGTTATTATATGAGGACTGGACTATGTAGGT TTGGGATGACCTGCAAATTCAATCACCCCCCAAATAGAAAACTGGCTGTTGCTGCTGCAA GGATGAATGGAGAGTATCCTTATAGAGTTGGTCAACCTGAGTGTCAATACTACTTGAAAA CTGGAACGTGCAAGTTTGGTGCAACATGCAAGTTTCATCACCCCAGGGAGAAGGCTGCAC TTGCAAACCGTGTACAGTTAAATGTTCTAGGCTACCCGATGCGTCCGAATGAGAAGGAAT GTGCTTACTACTTAAGAACAGGGCAGTGTAAATTTGCAAGCACATGTAAGTTTCATCATC CACAGCCCTCTAATACAATGGTTGCTGTACGGAACTCTATGTATTCACCTGGACAGTCTG CAACCTCTCCTGGTCAACATACTTATCCTGGGGCCGTAACAAACTGGACCTTGTCAAGAT CTGCATCATTTATTGCAAGCCCCAGGTGGCCTGGCCATTCAGGCTATGCACAAGTAATCG TTCCCCAGGGCCTTGTTCAAGTTCCAGGGTGGAATCCTTATGCTGCACAAATGGGCTCTT CGTCTCCAGATGACCAGCAACGAACACCTGTAACCACTCAATACTATGGCTCACGTCAGA GTGAAACAGGTGGTATGGGAGATCATGGAATGTATCAGTCATACCAAGGAGGCTCTGTTC CAGTCGGTGTTTACACAGTACAAGGGGAAAATATATTTCCTGAGAGACCTGATCAACCAG AGTGTCAATTCTACATGAAAACTGGAGACTGTAAGTTTGGTGCTGTTTGCAAGTTTCATC ACCCCAAGGAGCGACTGGTACCTGCTCCAAACTGTGCATTGAATTCACTTGGTCTTCCAC TACGCCCGGGAGAACCTGTCTGCACATTCTATTCTCGTTACGGGATCTGCAAGTTTGGTC CTAATTGCAAATTTGACCATCCTATGGGAACCCTTATGTATGGAAGTGCAACATCACCAA GAGGTGATGTGTCATCTATGCATTATCAGTTGTCACCCTCACCAGGGCATCCAGGAATAT TGCTTGATGGAGGCTCTGGAAGGTCTCACCGGGTTCCTCAGTCTGATTCCCAGCAAATAC CCTCTGGCGATGGGAATGCCGAGAGAGAGGCATCATAAGCCCTCCTCGGCCTTTCCTCAT GCTACCTCCCATTCTTGACTCTTCAGTAATTATCTCCAACAAATTCAAAGAGCTGAAGCT GTACAGGTCCTTGTCCATCCTTTTTCTGCTTCTCTGAATCACCACACACCGGTGCTTCAT CATGTATCACATTCAGGCAGGAAAATGTTCTTGCTTGCCCCTCCCCGCCCCAATTCCTGC ATGCCCCGTGAAAATAAATGGGGCAACCATTCTTATTTATCCCTACCATATACACACACA CAAGATACACTCACCTCCTGACACTCGGTTCGGCGAATGATGTGCCTTGATCCCTCTGTT GTAGTTATACAGGTGGCCTGCAGTGGACAAAGCTTACCAAACTGACTGTATTGGGGATTC TGTTTCGTTTTGCTCTTCTTCCTTTCTAGGCATTGGGGAGTAAGCGCAGGACTTGCTGCT TGTGCAAGTGTGCATGTTGAAAACAACGGAAATAATGCTCTGCCTTAATTGTAATAATTG TAATTTATGTTCTACCGACTGAATTATTTGTTCAATAAAAGAATCGGCCATGGCTGCGCG AGCTGGGTCATTGTTCTCGACAAAAAAAAAA



consensusID : consensus_12338#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 770
fasta sequence
                              [TCCTTTATCGTAATATCTGTTCTCTACCTCTTAGCTTGCATGCAAGATTAGCTTTCATTAACTTGCAGTTTATTACTGCAGAATGAGAAGGAATGTGCTTACTACTTAAGAACAGGGCAGTGTAAATTTGCAAGCACATGTAAGTTTCATCATCCACAGCCCTCTAATACAATGGTTGCTGTACGGAACTCTATGTATTCACCTGGACAGTCTGCAACCTCTCCTGGTCAACATACTTATCCTGGGGCCGTAACAAACTGGACCTTGTCAAGATCTGCATCATTTATTGCAAGCCCCAGGTGGCCTGGCCATTCAGGCTATGCACAAGTAATCGTTCCCCAGGGCCTTGTTCAAGTTCCAGGGTGGAATCCTTATGCTGCACAAATGGGCTCTTCGTCTCCAGATGACCAGCAACGAACACCTGTAACCACTCAATACTATGGCTCACGTCAGAGTGAAACAGGTGGTATGGGAGATCATGGAATGTATCAGTCATACCAAGGAGGCTCTGTTCCAGTCGGTGTTTACACAGTACAAGGGGAAAATATATTTCCTGAGAGACCTGATCAACCAGAGTGTCAATTCTACATGAAAACTGGAGACTGTAAGTTTGGTGCTGTTTGCAAGTTTCATCACCCCAAGGAGCGACTGGTACCTGCTCCAAACTGTGCATTGAATTCACTTGGTCTTCCACTACGCCCGGTAAGGTTTTTTTTTTATGTTGAAATTTCTCAAGCCAAATTTTGTGAGGACCATTCCATTTATAGTGG]

[+] EMBL CB651473             [TCCTTTATCGTAATATCTGTTCTCTACCTCTTAGCTTGCATGCAAGATTAGCTTTCATTAACTTGCAGTTTATTACTGCAGAATGAGAAGGAATGTGCTTACTACTTAAGAACAGGGCAGTGTAAATTTGCAAGCACATGTAAGTTTCATCATCCACAGCCCTCTAATACAATGGTTGCTGTACGGAACTCTATGTATTCACCTGGACAGTCTGCAACCTCTCCTGGTCAACATACTTATCCTGGGGCCGTAACAAACTGGACCTTGTCAAGATCTGCATCATTTATTGCAAGCCCCAGGTGGCCTGGCCATTCAGGCTATGCACAAGTAATCGTTCCCCAGGGCCTTGTTCAAGTTCCAGGGTGGAATCCTTATGCTGCACAAATGGGCTCTTCGTCTCCAGATGACCAGCAACGAACACCTGTAACCACTCAATACTATGGCTCACGTCAGAGTGAAACAGGTGGTATGGGAGATCATGGAATGTATCAGTCATACCAAGGAGGCTCTGTTCCAGTCGGTGTTTACACAGTACAAGGGGAAAATATATTTCCTGAGAGACCTGATCAACCAGAGTGTCAATTCTACATGAAAACTGGAGACTGTAAGTTTGGTGCTGTTTGCAAGTTTCATCACCCCAAGGAGCGACTGGTACCTGCTCCAAACTGTGCATTGAATTCACTTGGTCTTCCACTACGCCCGGTAAGGTTTTTTTTTTATGTTGAAATTTCTCAAGCCAAATTTTGTGAGGACCATTCCATTTATAGTGG]


>consensus_12338#1 TCCTTTATCGTAATATCTGTTCTCTACCTCTTAGCTTGCATGCAAGATTAGCTTTCATTA ACTTGCAGTTTATTACTGCAGAATGAGAAGGAATGTGCTTACTACTTAAGAACAGGGCAG TGTAAATTTGCAAGCACATGTAAGTTTCATCATCCACAGCCCTCTAATACAATGGTTGCT GTACGGAACTCTATGTATTCACCTGGACAGTCTGCAACCTCTCCTGGTCAACATACTTAT CCTGGGGCCGTAACAAACTGGACCTTGTCAAGATCTGCATCATTTATTGCAAGCCCCAGG TGGCCTGGCCATTCAGGCTATGCACAAGTAATCGTTCCCCAGGGCCTTGTTCAAGTTCCA GGGTGGAATCCTTATGCTGCACAAATGGGCTCTTCGTCTCCAGATGACCAGCAACGAACA CCTGTAACCACTCAATACTATGGCTCACGTCAGAGTGAAACAGGTGGTATGGGAGATCAT GGAATGTATCAGTCATACCAAGGAGGCTCTGTTCCAGTCGGTGTTTACACAGTACAAGGG GAAAATATATTTCCTGAGAGACCTGATCAACCAGAGTGTCAATTCTACATGAAAACTGGA GACTGTAAGTTTGGTGCTGTTTGCAAGTTTCATCACCCCAAGGAGCGACTGGTACCTGCT CCAAACTGTGCATTGAATTCACTTGGTCTTCCACTACGCCCGGTAAGGTTTTTTTTTTAT GTTGAAATTTCTCAAGCCAAATTTTGTGAGGACCATTCCATTTATAGTGG



consensusID : consensus_12338#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence
                              [TGGCCACTTCCCAAGTTGGAACAAAAGCTTTACCCACAAACTGGACCTTTATTTGGGGATTCTGTTTTCTGGTTTTTGCTCTTCTTCTTTCTAGGCCACTTGGGGAGTAAGCGCCAGGACTTGCTGCTTGTGACACAGTGTGCATGTTGAAAACAACGGAAATAATGCTCTGCCTTAATTGTAATAATTGTAATTTATGTTCTACCGACTGAATTATTTGTTCAATAAAAGAATCGGCCATGGCTGCGCGAGCTGGGTCATTGTTCTCGACAAAAAAAAAA]

[+] EMBL BI810953             [TGGCCACTTCCCAAGTTGGAACAAAAGCTTTACCCACAAACTGGACCTTTATTTGGGGATTCTGTTTTCTGGTTTTTGCTCTTCTTCTTTCTAGGCCACTTGGGGAGTAAGCGCCAGGACTTGCTGCTTGTGACACAGTGTGCATGTTGAAAACAACGGAAATAATGCTCTGCCTTAATTGTAATAATTGTAATTTATGTTCTACCGACTGAATTATTTGTTCAATAAAAGAATCGGCCATGGCTGCGCGAGCTGGGTCATTGTTCTCGACAAAAAAAAAA]


>consensus_12338#2 TGGCCACTTCCCAAGTTGGAACAAAAGCTTTACCCACAAACTGGACCTTTATTTGGGGAT TCTGTTTTCTGGTTTTTGCTCTTCTTCTTTCTAGGCCACTTGGGGAGTAAGCGCCAGGAC TTGCTGCTTGTGACACAGTGTGCATGTTGAAAACAACGGAAATAATGCTCTGCCTTAATT GTAATAATTGTAATTTATGTTCTACCGACTGAATTATTTGTTCAATAAAAGAATCGGCCA TGGCTGCGCGAGCTGGGTCATTGTTCTCGACAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12338#0      GTTCGGCCCAGGGGATGGACGCTTGTCTCCTCCTCTCTCCTCCTCGCCGCCTCCTCTCCT 60
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      CGCGTGCCTAGCTTCCCTTCCCTTCCCTTCCCTTCTTCCCTACTCCTCCCACTCCACTCC 120
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      ACGCGCACCTCGCCGCGTCCCTGATCTGATTGATTGATGCCGGGGCGGCCGTGATGGCGG 180
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      CGGGAGCAGGAGCGGGCGGCGGGGGCGGGGAGGGCGACAGCAACGGGGGAGGCACCTCCC 240
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      CGGGTGGCGTGTCGGCGGCGGCGCCGGCGATCGGGCCCCACCACCTCGGGGTTGCCGCCG 300
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      CGGAAGAAGCAATGTGGCAAATGACTTTAGGAGGAGGAGAGTCTATGGAGTCCACTCCAT 360
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      ACCCTGAGCGGATAGGAGAGCCAGACTGCAGTTATTATATGAGGACTGGACTATGTAGGT 420
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      TTGGGATGACCTGCAAATTCAATCACCCCCCAAATAGAAAACTGGCTGTTGCTGCTGCAA 480
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      GGATGAATGGAGAGTATCCTTATAGAGTTGGTCAACCTGAGTGTCAATACTACTTGAAAA 540
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      CTGGAACGTGCAAGTTTGGTGCAACATGCAAGTTTCATCACCCCAGGGAGAAGGCTGCAC 600
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      TTGCAAACCGTGTACAGTTAAATGTTCTAGGCTACCCGATGCGTCCGAATGAGAAGGAAT 660
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      GTGCTTACTACTTAAGAACAGGGCAGTGTAAATTTGCAAGCACATGTAAGTTTCATCATC 720
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      CACAGCCCTCTAATACAATGGTTGCTGTACGGAACTCTATGTATTCACCTGGACAGTCTG 780
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      CAACCTCTCCTGGTCAACATACTTATCCTGGGGCCGTAACAAACTGGACCTTGTCAAGAT 840
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      CTGCATCATTTATTGCAAGCCCCAGGTGGCCTGGCCATTCAGGCTATGCACAAGTAATCG 900
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      TTCCCCAGGGCCTTGTTCAAGTTCCAGGGTGGAATCCTTATGCTGCACAAATGGGCTCTT 960
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      CGTCTCCAGATGACCAGCAACGAACACCTGTAACCACTCAATACTATGGCTCACGTCAGA 1020
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      GTGAAACAGGTGGTATGGGAGATCATGGAATGTATCAGTCATACCAAGGAGGCTCTGTTC 1080
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      CAGTCGGTGTTTACACAGTACAAGGGGAAAATATATTTCCTGAGAGACCTGATCAACCAG 1140
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      AGTGTCAATTCTACATGAAAACTGGAGACTGTAAGTTTGGTGCTGTTTGCAAGTTTCATC 1200
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      ACCCCAAGGAGCGACTGGTACCTGCTCCAAACTGTGCATTGAATTCACTTGGTCTTCCAC 1260
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      TACGCCCGGGAGAACCTGTCTGCACATTCTATTCTCGTTACGGGATCTGCAAGTTTGGTC 1320
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      CTAATTGCAAATTTGACCATCCTATGGGAACCCTTATGTATGGAAGTGCAACATCACCAA 1380
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      GAGGTGATGTGTCATCTATGCATTATCAGTTGTCACCCTCACCAGGGCATCCAGGAATAT 1440
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      TGCTTGATGGAGGCTCTGGAAGGTCTCACCGGGTTCCTCAGTCTGATTCCCAGCAAATAC 1500
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ------------------------------------------------------------
                                                                                   

consensus_12338#0      CCTCTGGCGATGGGAATGCCGAGAGAGAGGCATCATAAGCCCTCCTCGGCCTTTCCTCAT 1560
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ----------------------------------------------------------TC 2
                                                                                   

consensus_12338#0      GCTACCTCCCATTCTTGACTCTTCAGTAATTATCTCCAACAAATTCAAAGAGCTGAAGCT 1620
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      CTTTATCGTAATATCTGTTCTCTACCTCTTAGCTTGCATGCAAGATTAGCTTTCATTAAC 62
                                                                                   

consensus_12338#0      GTACAGGTCCTTGTCCATCCTTTTTCTGCTTCTCTGAATCACCACACACCGGTGCTTCAT 1680
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      TTGCAGTTTATTACTGCAGAATGAGAAGGAATGTGCTTACTACTTAAGAACAGGGCAGTG 122
                                                                                   

consensus_12338#0      CATGTATCACATTCAGGCAGGAAAATGTTCTTGCTTGCCCCTCCCCGCCCCAATTCCTGC 1740
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      TAAATTTGCAAGCACATGTAAGTTTCATCATCCACAGCCCTCTAATACAATGGTTGCTGT 182
                                                                                   

consensus_12338#0      ATGCCCCGTGAAAATAAATGGGGCAACCATTCTTATTTATCCCTACCATATACACACACA 1800
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      ACGGAACTCTATGTATTCACCTGGACAGTCTGCAACCTCTCCTGGTCAACATACTTATCC 242
                                                                                   

consensus_12338#0      CAAGATACACTCACCTCCTGACACTCGGTTCGGCGAATGATGTGCCTTGATCCCTCTGTT 1860
consensus_12338#2      ----------------------------------------------------------TG 2
consensus_12338#1      TGGGGCCGTAACAAACTGGACCTTGTCAAGATCTGCATCATTTATTGCAAGCCCCAGGTG 302
                                                                                 * 

consensus_12338#0      GTA--GTTATACAGGTGGCCTGCAGT-GGACAAAGCTTACCAAACTGACT---GTA--TT 1912
consensus_12338#2      GCC--ACTTCCCAAGTTGGA-ACAA--AAGCTTTACCCACAAACTGGACC---TTTATTT 54
consensus_12338#1      GCCTGGCCATTCAGGCTATGCACAAGTAATCGTTCCCCAGGGCCTTGTTCAAGTTCCAGG 362
                       *          ** *       **      *    *  *       *       *     

consensus_12338#0      GGGGATTCTGTTTCGT-------TTTGCTCTTCTTCCTTTCT-AGGCA-TTGGGGA---- 1959
consensus_12338#2      GGGGATTCTGTTTTCTGGTT---TTTGCTCTTCTTCTTTCTA-GGCCACTTGGGGA---- 106
consensus_12338#1      GTGGAATCCTTATGCTGCACAAATGGGCTCTTCGTCTCCAGATGACCAGCAACGAACACC 422
                       * *** **  * *  *       *  ******* **          **     * *    

consensus_12338#0      -GTAAGCGC-AGGACTTGCTGCTTGTG-CA-AGTGTGCATGTTGAAAACAACGGAAATAA 2015
consensus_12338#2      -GTAAGCGCCAGGACTTGCTGCTTGTGACACAGTGTGCATGTTGAAAACAACGGAAATAA 165
consensus_12338#1      TGTAACCACTCAATACTATGGCTCACGTCAGAGTG---AAACAGGTGGTATGGGAGATCA 479
                        **** * *       *   ***   * ** ****   *    *     *  *** ** *

consensus_12338#0      TGCTCTGCCTTAATTGTAATAATTGTAATTTATGTTCTACCGACTGAATTATTTGTTCAA 2075
consensus_12338#2      TGCTCTGCCTTAATTGTAATAATTGTAATTTATGTTCTACCGACTGAATTATTTGTTCAA 225
consensus_12338#1      TGGAATGTATCAGTCATACCAA--GGAGGCTCTGTTCCAGTCGGTGTTTACACAGTACAA 537
                       **   **  * * *  **  **  * *   * ***** *     **  *     ** ***

consensus_12338#0      TAAAAGAAT-------CGGCCATGGCTGCGCGAGCTGGGTCATTGTTCTCGACAAAAAAA 2128
consensus_12338#2      TAAAAGAAT-------CGGCCATGGCTGCGCGAGCTGGGTCATTGTTCTCGACAAAAAAA 278
consensus_12338#1      GGGGAAAATATATTTCCTGAGAGACCTGATCAACCAGAGTGTCAATTCTACATGAAAACT 597
                           * ***       * *  *   ***  * * * * **     ****  *  ****  

consensus_12338#0      AAA--------------------------------------------------------- 2131
consensus_12338#2      AAA--------------------------------------------------------- 281
consensus_12338#1      GGAGACTGTAAGTTTGGTGCTGTTTGCAAGTTTCATCACCCCAAGGAGCGACTGGTACCT 657
                         *                                                         

consensus_12338#0      ------------------------------------------------------------
consensus_12338#2      ------------------------------------------------------------
consensus_12338#1      GCTCCAAACTGTGCATTGAATTCACTTGGTCTTCCACTACGCCCGGTAAGGTTTTTTTTT 717
                                                                                   

consensus_12338#0      -----------------------------------------------------
consensus_12338#2      -----------------------------------------------------
consensus_12338#1      TATGTTGAAATTTCTCAAGCCAAATTTTGTGAGGACCATTCCATTTATAGTGG 770
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)