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Oryza sativa
cluster # 12343 cluster # 12343       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12343#0 length = 1566 sequences # 2  
consensus_12343#1 length = 1149 sequences # 7  
consensus_12343#2 length = 527 sequences # 1  

consensusID : consensus_12343#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1566
fasta sequence
                              [CGCTCCTCTCTTGCAACATCAAACTCATCCATCCATCCATCGATCTGAGAAATCCAGCTTTCCAGTTCTTGGATCTCCATCGACCATGGTGAGGCCGCCGTGCTGCGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAGGGCTGATGCGGTGCAGCAAGAGCTGTAGGCTCCGGTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCGCTCCTCGGCAACCGCTGGGCGGCCATCGCGTCGTACCTCCCCGAGCGCACGGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGCGCAAGCTGCAGGGCGGCGGCGCCGGCGGTGACGGAGACGGTGGCGCCGCCGGCGACGCGGTCTCCCCGAAGCCCGCCGCGCAGAGGCCCGCGTCGTCGTCCAAGGGGCAGTGGGAGCGGCGCCTGCAGACCGACATCGACATGGCGCGCCGCGCGCTCCGCGAGGCGCTCACGTCGCTCGACGACGTCAAGCCACCGCATCAGCCCGACGCCGCCAACGCCGCCGCGGGGGGAGGCGGCGCCACCACCGGAGCAGCAGCGTCCGCCGGCGCCGATAGCCCCGCCGCGTCGAGCACGTCGGGGGCGTCGCAGTGCTCCCCGTCATCCGCCGGCTACGTCCTCACCACCGAGAACATCTCCCGGATGCTCGACGGGTGGGCCCGGAAGAAGGGCGGCGGCGGCGGCAGGCGCGCCGCCGGCAGCGGGCCGGCCACCCCCGGCGCCACCGAGAGCGCGTCCGGCTCGTCGGAAGCCTCCGAGGTGTCCTACGGCGGCACGGCCTTGTCCGCAGCGGCGGCGCCCGCGTCCGCCTTCGAGTACGAGACAAAGCCGACCGTCACCGCCGCCGCCGCCGCCGACGCCGGCGACGAGACGCAGCTCTCCGCCATCGAGTCGTGGCTGTTCGCCGACGCCGACGGCATCGAGAGTGGCAGCTTGCTCGACGCGGCCATGGATTACACCTTCTAATCCACACCACCACCAAACCATGCAAGAATCGTAG-G-CAGCGAGAGTGAGCAGCGCGAGTTCATCACTAGCCCAACCTGAAAAAAGAAAAATCGAAAACTACACAGATCCTGAAGTCCTCTTGATCTTGATTTCTCTCTTGATTAATCACTTGGGATCTGCGTAGTTTTCGCTTAGGAAAAAAAAAGAAGGGGATTAGAGGCGTTGCTCTACTGTTAATTGTTGTTACTGCGACTGAATATGGTCATGGTAATTTTGGTTTTTAGCTTGGATTAATCAAATCACTAGTAACAAGGTTTACTAATTAAGTAGATCTCCACACGTTTGCAAGATGCAGCGAGTGTGAGAGAGAATAACGTGAGTATGTCATATACTGCTGTATCACTAACTCTAGTCAGTAGATAATTTAATCAGTGGGCTTTGTCAAATTTTTAATTTTCAAAAAAAAAAAAAAAAGA]

[+] EMBL AY323480             [CGCTCCTCTCTTGCAACATCAAACTCATCCATCCATCCATCGATCTGAGAAATCCAGCTTTCCAGTTCTTGGATCTCCATCGACCATGGTGAGGCCGCCGTGCTGCGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAGGGCTGATGCGGTGCAGCAAGAGCTGTAGGCTCCGGTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCGCTCCTCGGCAACCGCTGGGCGGCCATCGCGTCGTACCTCCCCGAGCGCACGGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGCGCAAGCTGCAGGGCGGCGGCGCCGGCGGTGACGGAGACGGTGGCGCCGCCGGCGACGCGGTCTCCCCGAAGCCCGCCGCGCAGAGGCCCGCGTCGTCGTCCAAGGGGCAGTGGGAGCGGCGCCTGCAGACCGACATCGACATGGCGCGCCGCGCGCTCCGCGAGGCGCTCACGTCGCTCGACGACGTCAAGCCACCGCATCAGCCCGACGCCGCCAACGCCGCCGCGGGGGGAGGCGGCGCCACCACCGGAGCAGCAGCGTCCGCCGGCGCCGATAGCCCCGCCGCGTCGAGCACGTCGGGGGCGTCGCAGTGCTCCCCGTCATCCGCCGGCTACGTCCTCACCACCGAGAACATCTCCCGGATGCTCGACGGGTGGGCCCGGAAGAAGGGCGGCGGCGGCGGCAGGCGCGCCGCCGGCAGCGGGCCGGCCACCCCCGGCGCCACCGAGAGCGCGTCCGGCTCGTCGGAAGCCTCCGAGGTGTCCTACGGCGGCACGGCCTTGTCCGCAGCGGCGGCGCCCGCGTCCGCCTTCGAGTACGAGACAAAGCCGACCGTCACCGCCGCCGCCGCCGCCGACGCCGGCGACGAGACGCAGCTCTCCGCCATCGAGTCGTGGCTGTTCGCCGACGCCGACGGCATCGAGAGTGGCAGCTTGCTCGACGCGGCCATGGATTACACCTTCTAATCCACACCACCACCAAACCATGCAAGAATCGTAG G CAGCGAGAGTGAGCAGCGCGAGTTCATCACTAGCCCAACCTGAAAAAAGAAAAATCGA                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB649346             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCCCCGCCGCCGCCGACGCCGGCGACGAGACGCAGCTCTCCGCCATCGAGTCGTGGCTGTTCGCCGACGCCGACGGCATCGAGAGTGGCAGCTTGCTCGACGCGGCCATGGATTACACCTTTTAATCCACACCACCACCAAACCATGCAAGAATCGTAGCGTAAGCGAGAGTGAGCA  GCGAGTTCATCACTAGCCCAACCTGAAAAAAGAAAAATCGAAAACTACACAGATCCTGAAGTCCTCTTGATCTTGATTTCTCTCTTGATTAATCACTTGGGATCTGCGTAGTTTTCGCTTAGGAAAAAAAAAGAAGGGGATTAGAGGCGTTGCTCTACTGTTAATTGTTGTTACTGCGACTGAATATGGTCATGGTAATTTTGGTTTTTAGCTTGGATTAATCAAATCACTAGTAACAAGGTTTACTAATTAAGTAGATCTCCACACGTTTGCAAGATGCAGCGAGTGTGAGAGAGAATAACGTGAGTATGTCATATACTGCTGTATCACTAACTCTAGTCAGTAGATAATTTAATCAGTGGGCTTTGTCAAATTTTTAATTTTCAAAAAAAAAAAAAAAAGA]


>consensus_12343#0 CGCTCCTCTCTTGCAACATCAAACTCATCCATCCATCCATCGATCTGAGAAATCCAGCTT TCCAGTTCTTGGATCTCCATCGACCATGGTGAGGCCGCCGTGCTGCGACAAGGACGGCGT CAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCCTCGTCTCCTACGTCCAGGAGCA CGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAGGGCTGATGCGGTGCAGCAAGAG CTGTAGGCTCCGGTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTCACCGA CCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCGCTCCTCGGCAACCGCTGGGCGGCCAT CGCGTCGTACCTCCCCGAGCGCACGGACAACGACATCAAGAACTACTGGAACACCCACCT CAAGCGCAAGCTGCAGGGCGGCGGCGCCGGCGGTGACGGAGACGGTGGCGCCGCCGGCGA CGCGGTCTCCCCGAAGCCCGCCGCGCAGAGGCCCGCGTCGTCGTCCAAGGGGCAGTGGGA GCGGCGCCTGCAGACCGACATCGACATGGCGCGCCGCGCGCTCCGCGAGGCGCTCACGTC GCTCGACGACGTCAAGCCACCGCATCAGCCCGACGCCGCCAACGCCGCCGCGGGGGGAGG CGGCGCCACCACCGGAGCAGCAGCGTCCGCCGGCGCCGATAGCCCCGCCGCGTCGAGCAC GTCGGGGGCGTCGCAGTGCTCCCCGTCATCCGCCGGCTACGTCCTCACCACCGAGAACAT CTCCCGGATGCTCGACGGGTGGGCCCGGAAGAAGGGCGGCGGCGGCGGCAGGCGCGCCGC CGGCAGCGGGCCGGCCACCCCCGGCGCCACCGAGAGCGCGTCCGGCTCGTCGGAAGCCTC CGAGGTGTCCTACGGCGGCACGGCCTTGTCCGCAGCGGCGGCGCCCGCGTCCGCCTTCGA GTACGAGACAAAGCCGACCGTCACCGCCGCCGCCGCCGCCGACGCCGGCGACGAGACGCA GCTCTCCGCCATCGAGTCGTGGCTGTTCGCCGACGCCGACGGCATCGAGAGTGGCAGCTT GCTCGACGCGGCCATGGATTACACCTTCTAATCCACACCACCACCAAACCATGCAAGAAT CGTAGGCAGCGAGAGTGAGCAGCGCGAGTTCATCACTAGCCCAACCTGAAAAAAGAAAAA TCGAAAACTACACAGATCCTGAAGTCCTCTTGATCTTGATTTCTCTCTTGATTAATCACT TGGGATCTGCGTAGTTTTCGCTTAGGAAAAAAAAAGAAGGGGATTAGAGGCGTTGCTCTA CTGTTAATTGTTGTTACTGCGACTGAATATGGTCATGGTAATTTTGGTTTTTAGCTTGGA TTAATCAAATCACTAGTAACAAGGTTTACTAATTAAGTAGATCTCCACACGTTTGCAAGA TGCAGCGAGTGTGAGAGAGAATAACGTGAGTATGTCATATACTGCTGTATCACTAACTCT AGTCAGTAGATAATTTAATCAGTGGGCTTTGTCAAATTTTTAATTTTCAAAAAAAAAAAA AAAAGA



consensusID : consensus_12343#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1149
fasta sequence
                              [CTCACTCTCCACCACCAAACTCTCCTCCTCTCTTGCAACATCAAACTCATCCATCCATCCATCGATCTGAGAAATCCAGCTTTCCAGTTCTTGGATCTCCATCGACCATGGTGAGGCCGCCGTGCTGCGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAGGGCTGATGCGGTGCAGCAAGAGCTGTAGGCTCCGGTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCGCTCCTCGGCAACCGCTGGGCGGCCATCGCGTCGTACCTCCCCGAGCGCACGGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGCGCAAGCTGCAGGGCGGCGACGAGACGCAGCTCTCCGCCATCGAGTCGTGGCTGTTCGCCGACGCCGACGGCATCGAGAGTGGCAGCTTGCTCGACGCGGCCATGGATTACACCTTCTAATCCACACCACCACCAAACCATGCAAGAATCGTAGCGTAAGCGAGAGTGAGCAGCGAGTTCATCACTAGCCCAACCTGAAAAAAGAAAAATCGAAAACTACACAGATCCTGAAGTCCTCTTGATCTTGATTTCTCTCTTGATTAATCACTTGGGATCTGCGTAGTTTTCGCTTAGGAAAAAAAAAGAAGGGGATTAGAGGCGTTGCTCTACTGTTAATTGTTGTTACTGCGACTGAATATGGTCATGGTAATTTTGGTTTTTAGCTTGGATTAATCAAATCACTAGTAACAAGGTTTACTAATTAAGTAGATCTCCACACGTTTGCAAGATGCAGCGAGTGTGAGA-GAGAATAACGTGAGTATGTCATATACTGCTGTATCACTAACTCTAGTCAGTAGATAATTTAATCAGTGGGCTTTGTCAAATTTTTAATTTTCCTTTTTAGGTGTTTGTCAAATACTCAAAAGGTGGGAGTACATATATATCTGTTTGTCTAAAAATTTGTAGTAAAAAGAAGAGGTTAATGTAATAATTTGCCTGTGAATAAAATACTCAAATGTGGAGTATAAAAAAAAAAAAAAAA]

[+] EMBL AK101674             [CTCACTCTCCACCACCAAACTCTCCTCCTCTCTTGCAACATCAAACTCATCCATCCATCCATCGATCTGAGAAATCCAGCTTTCCAGTTCTTGGATCTCCATCGACCATGGTGAGGCCGCCGTGCTGCGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAGGGCTGATGCGGTGCAGCAAGAGCTGTAGGCTCCGGTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCGCTCCTCGGCAACCGCTGGGCGGCCATCGCGTCGTACCTCCCCGAGCGCACGGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGCGCAAGCTGCAGGGCGGCGACGAGACGCAGCTCTCCGCCATCGAGTCGTGGCTGTTCGCCGACGCCGACGGCATCGAGAGTGGCAGCTTGCTCGACGCGGCCATGGATTACACCTTCTAATCCACACCACCACCAAACCATGCAAGAATCGTAGCGTAAGCGAGAGTGAGCAGCGAGTTCATCACTAGCCCAACCTGAAAAAAGAAAAATCGAAAACTACACAGATCCTGAAGTCCTCTTGATCTTGATTTCTCTCTTGATTAATCACTTGGGATCTGCGTAGTTTTCGCTTAGGAAAAAAAAAGAAGGGGATTAGAGGCGTTGCTCTACTGTTAATTGTTGTTACTGCGACTGAATATGGTCATGGTAATTTTGGTTTTTAGCTTGGATTAATCAAATCACTAGTAACAAGGTTTACTAATTAAGTAGATCTCCACACGTTTGCAAGATGCAGCGAGTGTGAGA GAGAATAACGTGAGTATGTCATATACTGCTGTATCACTAACTCTAGTCAGTAGATAATTTAATCA                                                                                                                                                                             ]
[+] EMBL C91733               [         CACCACCAAACTCTCCTCNTCTCTTGCAACATCAAACTCATCCATCCATCCATCGATCNGAGAAATCCAGCTTTCCAGTTCTTGGATCNCCATCGACCATGGTGAGGNCGCCGTGCTGCGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGANGAGGACCTCGTCCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTNGNGCGCCGTCCCGNGAGGAACAGGGCTGATGCGGTGCAGCAAGAGCTGTAGGCTCCGGTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTCACCGACCAGGAGGNGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB649345             [                       CCTCCTCTCTTGCAACATCAAACTCATCCATCCATCCATCGATCTGAGAAATCCAGCTTTCCAGTTCTTGGATCTCCATCGACCATGGTGAGGCCGCCGTGCTGCGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAGGGCTGATGCGGTGCAGCAAGAGCTGTAGGCTCCGGTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCGCTCCTCGGCAACCGCTGGGCGGCCATCGCGTCGTACCTCCCCGAGCGCACGGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGCGCAAGCTGCAGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL C28158               [                            TCTCTTGCAACATCAAACTCATCCATCCATCCATCGATCTGAGAAATCCAGCTTTCCAGTTCTTGGATCTCCATCGACCATGGTGAGGCCGCCGTGCTGCGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAGGGCTGATGCGGTGCAGCAAGAGCTGTAGGCTCCGGTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTNACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCGCTNCTCGGCAACCGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AY083610             [                                TTGCAACATCAAACTCATCCATCCATCCATCGATCTGAGAAATCCAGCTTTCCAGTTCTTGGATCTCCATCGACCATGGTGAGGCCGCCGTGCTGCGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAGGGCTGATGCGGTGCAGCAAGAGCTGTAGGCTCCGGTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCGCTCCTCGGCAACCGCTGGGCGGCCATCGCGTCGTACCTCCCCGAGCGCACGGACAACGACATCAAGAACTACTGGAACACCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU032915             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AATCGTAGCGTAANAGGNAGTGAGCAGCGAGTNCATCACTAGCCCAACCTGAAAAAAGAAAANTCGAAAACTNCACAGATCCTGAAGTCCTCTTGATCTTGATTNCTCTCTTGATTAATCACTTGGGATCTGCGTAGTTTTCGCTTAGGAAAAAAAAAGAAGGGGATTAGAGGCGCTGCTCTACTGTTAATTGTTNTNACTGCGACTGAATATGGTCATGGTAATTTTGGTTTTTAGCTTGGATTAATCAAATNACTAGTAACAAGGTTTACTAATTAAGTAGAT                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU101855             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAGGCGTTGCTCTACTGTTAATTGTTGTTACTGCGACTGAATATGGTCATGGTAATTTTGGTTTTTAGCTTGGATTAATCAAATCACTAGTAACAAGGTTTACTAATTAAGTAGATCTCCACACGTTTGCAAGATGCAGCGAGTGTGAGACGAGAATAACGTGAGTATGTCATATACTGCTGTATCACTAACTCTAGTCAGTAGATAATTTAATCAGTGGGCTTTGTCAAATTTTTAATTTTCCTTTTTAGGTGTTTGTCAAATACTCAAAAGGTGGGAGTACATATATATCTGTTTGTCTAAAAATTTGTAGTAAAAAGAAGAGGTTAATGTAATAATTTGCCTGTGAATAAAATACTCAAATGTGGAGTATAAAAAAAAAAAAAAAA]


>consensus_12343#1 CTCACTCTCCACCACCAAACTCTCCTCCTCTCTTGCAACATCAAACTCATCCATCCATCC ATCGATCTGAGAAATCCAGCTTTCCAGTTCTTGGATCTCCATCGACCATGGTGAGGCCGC CGTGCTGCGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCC TCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAG GGCTGATGCGGTGCAGCAAGAGCTGTAGGCTCCGGTGGACCAACTACCTGAGGCCCGGGA TCAAGCGGGGAAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCGCTCC TCGGCAACCGCTGGGCGGCCATCGCGTCGTACCTCCCCGAGCGCACGGACAACGACATCA AGAACTACTGGAACACCCACCTCAAGCGCAAGCTGCAGGGCGGCGACGAGACGCAGCTCT CCGCCATCGAGTCGTGGCTGTTCGCCGACGCCGACGGCATCGAGAGTGGCAGCTTGCTCG ACGCGGCCATGGATTACACCTTCTAATCCACACCACCACCAAACCATGCAAGAATCGTAG CGTAAGCGAGAGTGAGCAGCGAGTTCATCACTAGCCCAACCTGAAAAAAGAAAAATCGAA AACTACACAGATCCTGAAGTCCTCTTGATCTTGATTTCTCTCTTGATTAATCACTTGGGA TCTGCGTAGTTTTCGCTTAGGAAAAAAAAAGAAGGGGATTAGAGGCGTTGCTCTACTGTT AATTGTTGTTACTGCGACTGAATATGGTCATGGTAATTTTGGTTTTTAGCTTGGATTAAT CAAATCACTAGTAACAAGGTTTACTAATTAAGTAGATCTCCACACGTTTGCAAGATGCAG CGAGTGTGAGAGAGAATAACGTGAGTATGTCATATACTGCTGTATCACTAACTCTAGTCA GTAGATAATTTAATCAGTGGGCTTTGTCAAATTTTTAATTTTCCTTTTTAGGTGTTTGTC AAATACTCAAAAGGTGGGAGTACATATATATCTGTTTGTCTAAAAATTTGTAGTAAAAAG AAGAGGTTAATGTAATAATTTGCCTGTGAATAAAATACTCAAATGTGGAGTATAAAAAAA AAAAAAAAA



consensusID : consensus_12343#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence
                              [TCCACCACCAAACTCTCCTCCTCTCTTGCAACATCAAACTCATCCATCCATCCATCGATCTGAGAAATCCAGCTTTCCAGTTCTTGGATCTCCATCGACCATGGTGAGGCCGCCGTGCTGCGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAGGTGACGATCACTTGTACCGCCTGAGCTAGGATGGCTTCTTCTTCTTCTTGATTCTGACGCGTGCGAGGTGTTTGTCGAAATGGTTGCTTGCAGGGCTGATGCGGTGCAGCAAGAGCTGTAGGCTCCGGTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCGCTCCTCGGCAACCGCTGGGCGGCCATCGCGTCGTACCTCCCCGAGCGCACGGACAACGACATCAAGAACTACTGGAACACCCACC]

[+] EMBL CB639367             [TCCACCACCAAACTCTCCTCCTCTCTTGCAACATCAAACTCATCCATCCATCCATCGATCTGAGAAATCCAGCTTTCCAGTTCTTGGATCTCCATCGACCATGGTGAGGCCGCCGTGCTGCGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAGGTGACGATCACTTGTACCGCCTGAGCTAGGATGGCTTCTTCTTCTTCTTGATTCTGACGCGTGCGAGGTGTTTGTCGAAATGGTTGCTTGCAGGGCTGATGCGGTGCAGCAAGAGCTGTAGGCTCCGGTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCGCTCCTCGGCAACCGCTGGGCGGCCATCGCGTCGTACCTCCCCGAGCGCACGGACAACGACATCAAGAACTACTGGAACACCCACC]


>consensus_12343#2 TCCACCACCAAACTCTCCTCCTCTCTTGCAACATCAAACTCATCCATCCATCCATCGATC TGAGAAATCCAGCTTTCCAGTTCTTGGATCTCCATCGACCATGGTGAGGCCGCCGTGCTG CGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCCTCGTCTC CTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAGGTGACGA TCACTTGTACCGCCTGAGCTAGGATGGCTTCTTCTTCTTCTTGATTCTGACGCGTGCGAG GTGTTTGTCGAAATGGTTGCTTGCAGGGCTGATGCGGTGCAGCAAGAGCTGTAGGCTCCG GTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTCACCGACCAGGAGGAGAA GCTCATCGTCCACCTCCAGGCGCTCCTCGGCAACCGCTGGGCGGCCATCGCGTCGTACCT CCCCGAGCGCACGGACAACGACATCAAGAACTACTGGAACACCCACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12343#0      ----------------------CGCTCCTCTCTTGCAACATCAAACTCATCCATCCATCC 38
consensus_12343#1      CTCACTCTCCACCACCAAACTCTCCTCCTCTCTTGCAACATCAAACTCATCCATCCATCC 60
consensus_12343#2      -------TCCACCACCAAACTCTCCTCCTCTCTTGCAACATCAAACTCATCCATCCATCC 53
                                               ************************************

consensus_12343#0      ATCGATCTGAGAAATCCAGCTTTCCAGTTCTTGGATCTCCATCGACCATGGTGAGGCCGC 98
consensus_12343#1      ATCGATCTGAGAAATCCAGCTTTCCAGTTCTTGGATCTCCATCGACCATGGTGAGGCCGC 120
consensus_12343#2      ATCGATCTGAGAAATCCAGCTTTCCAGTTCTTGGATCTCCATCGACCATGGTGAGGCCGC 113
                       ************************************************************

consensus_12343#0      CGTGCTGCGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCC 158
consensus_12343#1      CGTGCTGCGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCC 180
consensus_12343#2      CGTGCTGCGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCC 173
                       ************************************************************

consensus_12343#0      TCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAG 218
consensus_12343#1      TCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAG 240
consensus_12343#2      TCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAG 233
                       ************************************************************

consensus_12343#0      G----------------------------------------------------------- 219
consensus_12343#1      G----------------------------------------------------------- 241
consensus_12343#2      GTGACGATCACTTGTACCGCCTGAGCTAGGATGGCTTCTTCTTCTTCTTGATTCTGACGC 293
                       *                                                           

consensus_12343#0      ----------------------------------GCTGATGCGGTGCAGCAAGAGCTGTA 245
consensus_12343#1      ----------------------------------GCTGATGCGGTGCAGCAAGAGCTGTA 267
consensus_12343#2      GTGCGAGGTGTTTGTCGAAATGGTTGCTTGCAGGGCTGATGCGGTGCAGCAAGAGCTGTA 353
                                                         **************************

consensus_12343#0      GGCTCCGGTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTCACCGACCAGG 305
consensus_12343#1      GGCTCCGGTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTCACCGACCAGG 327
consensus_12343#2      GGCTCCGGTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTCACCGACCAGG 413
                       ************************************************************

consensus_12343#0      AGGAGAAGCTCATCGTCCACCTCCAGGCGCTCCTCGGCAACCGCTGGGCGGCCATCGCGT 365
consensus_12343#1      AGGAGAAGCTCATCGTCCACCTCCAGGCGCTCCTCGGCAACCGCTGGGCGGCCATCGCGT 387
consensus_12343#2      AGGAGAAGCTCATCGTCCACCTCCAGGCGCTCCTCGGCAACCGCTGGGCGGCCATCGCGT 473
                       ************************************************************

consensus_12343#0      CGTACCTCCCCGAGCGCACGGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGC 425
consensus_12343#1      CGTACCTCCCCGAGCGCACGGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGC 447
consensus_12343#2      CGTACCTCCCCGAGCGCACGGACAACGACATCAAGAACTACTGGAACACCCACC------ 527
                       ******************************************************      

consensus_12343#0      GCAAGCTGCAGGGCGGCGGCGCCGGCGGTGACGGAGACGGTGGCGCCGCCGGCGACGCGG 485
consensus_12343#1      GCAAGCTGCAGGGCGGCG------------------------------------------ 465
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      TCTCCCCGAAGCCCGCCGCGCAGAGGCCCGCGTCGTCGTCCAAGGGGCAGTGGGAGCGGC 545
consensus_12343#1      ------------------------------------------------------------
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      GCCTGCAGACCGACATCGACATGGCGCGCCGCGCGCTCCGCGAGGCGCTCACGTCGCTCG 605
consensus_12343#1      ------------------------------------------------------------
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      ACGACGTCAAGCCACCGCATCAGCCCGACGCCGCCAACGCCGCCGCGGGGGGAGGCGGCG 665
consensus_12343#1      ------------------------------------------------------------
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      CCACCACCGGAGCAGCAGCGTCCGCCGGCGCCGATAGCCCCGCCGCGTCGAGCACGTCGG 725
consensus_12343#1      ------------------------------------------------------------
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      GGGCGTCGCAGTGCTCCCCGTCATCCGCCGGCTACGTCCTCACCACCGAGAACATCTCCC 785
consensus_12343#1      ------------------------------------------------------------
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      GGATGCTCGACGGGTGGGCCCGGAAGAAGGGCGGCGGCGGCGGCAGGCGCGCCGCCGGCA 845
consensus_12343#1      ------------------------------------------------------------
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      GCGGGCCGGCCACCCCCGGCGCCACCGAGAGCGCGTCCGGCTCGTCGGAAGCCTCCGAGG 905
consensus_12343#1      ------------------------------------------------------------
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      TGTCCTACGGCGGCACGGCCTTGTCCGCAGCGGCGGCGCCCGCGTCCGCCTTCGAGTACG 965
consensus_12343#1      ------------------------------------------------------------
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      AGACAAAGCCGACCGTCACCGCCGCCGCCGCCGCCGACGCCGGCGACGAGACGCAGCTCT 1025
consensus_12343#1      ---------------------------------------------ACGAGACGCAGCTCT 480
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      CCGCCATCGAGTCGTGGCTGTTCGCCGACGCCGACGGCATCGAGAGTGGCAGCTTGCTCG 1085
consensus_12343#1      CCGCCATCGAGTCGTGGCTGTTCGCCGACGCCGACGGCATCGAGAGTGGCAGCTTGCTCG 540
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      ACGCGGCCATGGATTACACCTTCTAATCCACACCACCACCAAACCATGCAAGAATCGTAG 1145
consensus_12343#1      ACGCGGCCATGGATTACACCTTCTAATCCACACCACCACCAAACCATGCAAGAATCGTAG 600
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      GC--AGCGAGAGTGAGCAGCGCGAGTTCATCACTAGCCCAACCTGAAAAAAGAAAAATCG 1203
consensus_12343#1      CGTAAGCGAGAGTGAGCAGC--GAGTTCATCACTAGCCCAACCTGAAAAAAGAAAAATCG 658
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      AAAACTACACAGATCCTGAAGTCCTCTTGATCTTGATTTCTCTCTTGATTAATCACTTGG 1263
consensus_12343#1      AAAACTACACAGATCCTGAAGTCCTCTTGATCTTGATTTCTCTCTTGATTAATCACTTGG 718
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      GATCTGCGTAGTTTTCGCTTAGGAAAAAAAAAGAAGGGGATTAGAGGCGTTGCTCTACTG 1323
consensus_12343#1      GATCTGCGTAGTTTTCGCTTAGGAAAAAAAAAGAAGGGGATTAGAGGCGTTGCTCTACTG 778
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      TTAATTGTTGTTACTGCGACTGAATATGGTCATGGTAATTTTGGTTTTTAGCTTGGATTA 1383
consensus_12343#1      TTAATTGTTGTTACTGCGACTGAATATGGTCATGGTAATTTTGGTTTTTAGCTTGGATTA 838
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      ATCAAATCACTAGTAACAAGGTTTACTAATTAAGTAGATCTCCACACGTTTGCAAGATGC 1443
consensus_12343#1      ATCAAATCACTAGTAACAAGGTTTACTAATTAAGTAGATCTCCACACGTTTGCAAGATGC 898
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      AGCGAGTGTGAGAGAGAATAACGTGAGTATGTCATATACTGCTGTATCACTAACTCTAGT 1503
consensus_12343#1      AGCGAGTGTGAGAGAGAATAACGTGAGTATGTCATATACTGCTGTATCACTAACTCTAGT 958
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      CAGTAGATAATTTAATCAGTGGGCTTTGTCAAATTTTTAATTTTCAA----AAAAAAAAA 1559
consensus_12343#1      CAGTAGATAATTTAATCAGTGGGCTTTGTCAAATTTTTAATTTTCCTTTTTAGGTGTTTG 1018
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      AAAAAGA----------------------------------------------------- 1566
consensus_12343#1      TCAAATACTCAAAAGGTGGGAGTACATATATATCTGTTTGTCTAAAAATTTGTAGTAAAA 1078
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      ------------------------------------------------------------
consensus_12343#1      AGAAGAGGTTAATGTAATAATTTGCCTGTGAATAAAATACTCAAATGTGGAGTATAAAAA 1138
consensus_12343#2      ------------------------------------------------------------
                                                                                   

consensus_12343#0      -----------
consensus_12343#1      AAAAAAAAAAA 1149
consensus_12343#2      -----------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)