These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12345#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 914 fasta sequence [CGCCTTCAAAAGTTCTTGGAATCACCAGCTGCAACTTGTTGGCGAGCTCTTGTGGGTGCAGTTCGCTCTACGACCTTTTTGTCTGCTTTTGTTACATTCTTCCAGGCTGCCATCTGTTTGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGTCTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTACTTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATATTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAAGCAAAATAAGCAACCCGAGCCC-ACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCA-ACCA-AGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACC-TGGAAGC-AATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGC-AGTTTGAGCTTTCTTTGC-TTGT-AC-ACTTTGA-AAACCAACAAATCCT-AACCGTAAAGC---A---TCCAATATGTCAGGATTTAGCAT-CCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACA--CAAGGAGTATATATAGTGTTCTAT-TGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCACCAATTTGTTGGGTGCGGAATGATTAGAAGTTCTTGAATTGCTCTTATCTAGGCGTTTTTGTGCATGTTGAGTGTAAGATACTCGCAACAAAAGGAGCTA-TCGTAATAAACACAGGCA-TTCGTTGCTAAAAAAAAAA] [+] EMBL AK059085 [CGCCTTCAAAAGTTCTTGGAATCACCAGCTGCAACTTGTTGGCGAGCTCTTGTGGGTGCAGTTCGCTCTACGACCTTTTTGTCTGCTTTTGTTACATTCTTCCAGGCTGCCATCTGTTTGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGTCTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTACTTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATATTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAAGCAAAATAAGCAACCCGAGCCC ACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCA ACCA AGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACC TGGAAGC AATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGC AGTTTGAGCTTTCTTTGC TTGT AC ACTTTGA AAACCAACAAATCCT AACCGTAAAGC A TCCAATATGTCAGGATTTAGCAT CCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACA CAAGGAGTATATATAGTGTTCTAT TGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCACCAATTTGTTGGGTGCGGAATGATT ] [-] EMBL CB670028 [ CTGTTTGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGTCTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTACTTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATATTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAAGCAAAATAAGCAACCCGAGCCC ACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCA ACCA AGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACC TGGAAGC AATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGC AGTTTGAGCTTTCTTTGC TTGT AC ACTTTGA AAACCAACAAATCCT AACCGTAAAGC A TCCAATATGTCAGGATTTAGCAT CCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACA CAAGGAGTATATATAGTGTTCTAT TGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCACCAATTTGTTGGGTGCGGAATGATTAGAAGTTCTTGAATTGCTCTTATCTAGGCGTTTTTGTGCATGTTGAGTGTAAGATACTCGCAACAAAAGGAGCTA TCGTAATAAACACAGGCA TTCGTTG ] [-] EMBL CF281563 [ TTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATATTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAAGCAAAATAAGCAACCCGAGCCC ACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCA ACCA AGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACC TGGAAGC AATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGC AGTTTGAGCTTTCTTTGC TTGT AC ACTTTGA AAACCAACAAATCCT AACCGTAAAGC A TCCAATATGTCAGGATTTAGCAT CCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACA CAAGGGGTATATATAGTGTTCTAT TGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCACCAATTTGTTGGGTGCGGAAaaaaaa ] [+] EMBL CA767336 [ GTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCGAGCAAAATAAGCAACCCGAGCCC ACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACTTGCTGGAGCA ACCA AGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACC TGGAAGC AATTCCCGGACTTTGAGTAGAGACATCGCATTCGTGGC AGTTTGAGCTTTCTTTGC TTGT AC ACTTTGA AAACCAACAAATCCT AACCGTAAAGC A TCCAATATGTCAGGATTTAGCAT CCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACA CAAGGAGTATATATAGTGTTCTAT TGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCACCAATTTGTTGGGTGCGGAATGATTAGAAGTTCTTGAATTGCTCTTATCTAGGCGTTTTTGTGCATGTTGAGTGTAAGATACTCGCAACAAAAGGAGCTA TCGTAATAAACACAGGCA TTCGTT ] [+] EMBL BI811930 [ GGACTCATCAGACGGTTCCTGGCGAGC AAATAAGCAACCCGAGCCCAACCGCCAAATCCCCATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCACACCA AGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACC TGGAAGC AATTCCCGGACTTTGAGTAGAGACATCGCATTCGT GC AGTTTGAGCTTTCTTTGC TTGT AC ACTTTGA AAACCAAC AATCCT AACCGTAAAGC A TCCAATATGTCAGGATTTAGCAT CCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACA CAAGGAGTATATATAGTGTTCTAT TGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCACCCATTTGTTGGGTGCGGAATGATTAGAAGTTCTTGAAaaaaaaaa ] [+] EMBL BM421811 [ AGCA ACCAGAGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACCGTGGAAGCAAATTCCCGGACTTTGAGTAGAGACATCGCATTCGTGGCAAGTTTGAGCTTTCTTTGCGTTGTGACAACTTTGAGAAACC AC AATCCTGAACCGTAAAGC A TGCCATATGTCAGGATTTAGCAT CCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACACGCAAGGAGTATATATAGTGTTCTAT TGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCACC ATTTGTTGGGTGCGGAATGATTAGAAGTTCTTGAATTGCTCTTATCTAGGCGTTTTTGTGCATGTTGAGTGTAAGATACTCGC AC AAAGGAGCTACTCGTAATAAACACAGGCA TTCGTTGCTAAAAAAAA ] [+] EMBL BI812119 [ AACCCACCAAATCCT AACCGTAAAGCCAAACCTTCCAATATGTCAGGATTTAGCATCCCTTTTCCACGGC TGTTGTGTTAATATCTATACA CAAGGAGTATATATAGTGTTCTATCTGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCACCAATTTGTTGGGTGCGGAATGATTAGAAGTTCTTGAATTGCTCTTATCTAGGCGTTTTTGTGCATGTTGAGTGTAAGATACTCGCAACAAAAGGAGCTA TCGTAATAAACACAGGCATTTCGTTGCTAAAAAAAAAA] consensusID : consensus_12345#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 714 fasta sequence [TTGTTGGCCGAGCTCTTGTGGGTGCAGTTCGCTCTACGACCTTTTTTGTCTGCTTTTGTTACATTCTTCCAGGCTGCCATCTGTTTGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGTCTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTACTTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATATTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAAGCAAAATAAGCAACCCGAGCCCACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCAACCAAGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACCTGGAAGCAATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGCAGTTTGAGCTTTCTTTGCTTGTACACTTTGAAAACCAACAAATCCTAACCGTAAAGCATCCAATATGTCAGGATTTAGCATCCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACACAAGGAGTATATATAGTGTTCAAAAAAAAAA] [+] EMBL AU077466 [TTGTTGGCCGAGCTCTTGTGGGTGCAGTTCGCTCTACGACCTTTTTTGTCTGCTTTTGTTACATTCTTCCAGGCTGCCATCTGTTTGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGTCTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTACTTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATATTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAAGCAAAATAAGCAACCCGAGCCCACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCAACCAAGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACCTGGAAGCAATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGCAGTTTGAGCTTTCTTTGCTTGTACACTTTGAAAACCAACAAATCCTAACCGTAAAGCATCCAATATGTCAGGATTTAGCATCCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACACAAGGAGTATATATAGTGTTCAAAAAAAAAA] [+] EMBL CF323581 [ TTGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGTCTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTACTTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATATTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAAGCAAAATAAGCAACCCGAGCCCACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCAACCAAGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACCTGGAAGCAATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGCAGTTTGAGCTTTCTTT ] [+] EMBL CF281564 [ TGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGTCTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTACTTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATATTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAAGCAAAATAAGCAACCCGAGCCCACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCAACCAAGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACCTGGAAGCAATTCCCGGACTTTGAGTAGAGACGTCGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12345#0 CGCCTTCAAAAGTTCTTGGAATCACCAGCTGCAACTTGTTGGC-GAGCTCTTGTGGGTGC 59 consensus_12345#1 -----------------------------------TTGTTGGCCGAGCTCTTGTGGGTGC 25 ******** **************** consensus_12345#0 AGTTCGCTCTACGACCTTTTT-GTCTGCTTTTGTTACATTCTTCCAGGCTGCCATCTGTT 118 consensus_12345#1 AGTTCGCTCTACGACCTTTTTTGTCTGCTTTTGTTACATTCTTCCAGGCTGCCATCTGTT 85 ********************* ************************************** consensus_12345#0 TGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGT 178 consensus_12345#1 TGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGT 145 ************************************************************ consensus_12345#0 CTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTAC 238 consensus_12345#1 CTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTAC 205 ************************************************************ consensus_12345#0 TTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATA 298 consensus_12345#1 TTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATA 265 ************************************************************ consensus_12345#0 TTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGG 358 consensus_12345#1 TTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGG 325 ************************************************************ consensus_12345#0 AGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAA 418 consensus_12345#1 AGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAA 385 ************************************************************ consensus_12345#0 GCAAAATAAGCAACCCGAGCCCACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGA 478 consensus_12345#1 GCAAAATAAGCAACCCGAGCCCACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGA 445 ************************************************************ consensus_12345#0 AGCTGAACGTGCTGGAGCAACCAAGAACACAGCAGGGCCCAGAGAATGGCCTGACATCAT 538 consensus_12345#1 AGCTGAACGTGCTGGAGCAACCAAGAACACAGCAGGGCCCAGAGAATGGCCTGACATCAT 505 ************************************************************ consensus_12345#0 CAGAGAAGTACAACCTGGAAGCAATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGC 598 consensus_12345#1 CAGAGAAGTACAACCTGGAAGCAATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGC 565 ************************************************************ consensus_12345#0 AGTTTGAGCTTTCTTTGCTTGTACACTTTGAAAACCAACAAATCCTAACCGTAAAGCATC 658 consensus_12345#1 AGTTTGAGCTTTCTTTGCTTGTACACTTTGAAAACCAACAAATCCTAACCGTAAAGCATC 625 ************************************************************ consensus_12345#0 CAATATGTCAGGATTTAGCATCCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACACA 718 consensus_12345#1 CAATATGTCAGGATTTAGCATCCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACACA 685 ************************************************************ consensus_12345#0 AGGAGTATATATAGTGTTCTATTGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCAC 778 consensus_12345#1 AGGAGTATATATAGTGTTCAAAAAAAAAA------------------------------- 714 ******************* * consensus_12345#0 CAATTTGTTGGGTGCGGAATGATTAGAAGTTCTTGAATTGCTCTTATCTAGGCGTTTTTG 838 consensus_12345#1 ------------------------------------------------------------ consensus_12345#0 TGCATGTTGAGTGTAAGATACTCGCAACAAAAGGAGCTATCGTAATAAACACAGGCATTC 898 consensus_12345#1 ------------------------------------------------------------ consensus_12345#0 GTTGCTAAAAAAAAAA 914 consensus_12345#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||