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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12345#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 914 fasta sequence
[CGCCTTCAAAAGTTCTTGGAATCACCAGCTGCAACTTGTTGGCGAGCTCTTGTGGGTGCAGTTCGCTCTACGACCTTTTTGTCTGCTTTTGTTACATTCTTCCAGGCTGCCATCTGTTTGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGTCTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTACTTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATATTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAAGCAAAATAAGCAACCCGAGCCC-ACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCA-ACCA-AGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACC-TGGAAGC-AATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGC-AGTTTGAGCTTTCTTTGC-TTGT-AC-ACTTTGA-AAACCAACAAATCCT-AACCGTAAAGC---A---TCCAATATGTCAGGATTTAGCAT-CCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACA--CAAGGAGTATATATAGTGTTCTAT-TGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCACCAATTTGTTGGGTGCGGAATGATTAGAAGTTCTTGAATTGCTCTTATCTAGGCGTTTTTGTGCATGTTGAGTGTAAGATACTCGCAACAAAAGGAGCTA-TCGTAATAAACACAGGCA-TTCGTTGCTAAAAAAAAAA]
[+] EMBL AK059085 [CGCCTTCAAAAGTTCTTGGAATCACCAGCTGCAACTTGTTGGCGAGCTCTTGTGGGTGCAGTTCGCTCTACGACCTTTTTGTCTGCTTTTGTTACATTCTTCCAGGCTGCCATCTGTTTGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGTCTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTACTTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATATTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAAGCAAAATAAGCAACCCGAGCCC ACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCA ACCA AGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACC TGGAAGC AATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGC AGTTTGAGCTTTCTTTGC TTGT AC ACTTTGA AAACCAACAAATCCT AACCGTAAAGC A TCCAATATGTCAGGATTTAGCAT CCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACA CAAGGAGTATATATAGTGTTCTAT TGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCACCAATTTGTTGGGTGCGGAATGATT ]
[-] EMBL CB670028 [ CTGTTTGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGTCTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTACTTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATATTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAAGCAAAATAAGCAACCCGAGCCC ACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCA ACCA AGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACC TGGAAGC AATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGC AGTTTGAGCTTTCTTTGC TTGT AC ACTTTGA AAACCAACAAATCCT AACCGTAAAGC A TCCAATATGTCAGGATTTAGCAT CCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACA CAAGGAGTATATATAGTGTTCTAT TGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCACCAATTTGTTGGGTGCGGAATGATTAGAAGTTCTTGAATTGCTCTTATCTAGGCGTTTTTGTGCATGTTGAGTGTAAGATACTCGCAACAAAAGGAGCTA TCGTAATAAACACAGGCA TTCGTTG ]
[-] EMBL CF281563 [ TTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATATTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAAGCAAAATAAGCAACCCGAGCCC ACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCA ACCA AGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACC TGGAAGC AATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGC AGTTTGAGCTTTCTTTGC TTGT AC ACTTTGA AAACCAACAAATCCT AACCGTAAAGC A TCCAATATGTCAGGATTTAGCAT CCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACA CAAGGGGTATATATAGTGTTCTAT TGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCACCAATTTGTTGGGTGCGGAAaaaaaa ]
[+] EMBL CA767336 [ GTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCGAGCAAAATAAGCAACCCGAGCCC ACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACTTGCTGGAGCA ACCA AGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACC TGGAAGC AATTCCCGGACTTTGAGTAGAGACATCGCATTCGTGGC AGTTTGAGCTTTCTTTGC TTGT AC ACTTTGA AAACCAACAAATCCT AACCGTAAAGC A TCCAATATGTCAGGATTTAGCAT CCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACA CAAGGAGTATATATAGTGTTCTAT TGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCACCAATTTGTTGGGTGCGGAATGATTAGAAGTTCTTGAATTGCTCTTATCTAGGCGTTTTTGTGCATGTTGAGTGTAAGATACTCGCAACAAAAGGAGCTA TCGTAATAAACACAGGCA TTCGTT ]
[+] EMBL BI811930 [ GGACTCATCAGACGGTTCCTGGCGAGC AAATAAGCAACCCGAGCCCAACCGCCAAATCCCCATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCACACCA AGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACC TGGAAGC AATTCCCGGACTTTGAGTAGAGACATCGCATTCGT GC AGTTTGAGCTTTCTTTGC TTGT AC ACTTTGA AAACCAAC AATCCT AACCGTAAAGC A TCCAATATGTCAGGATTTAGCAT CCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACA CAAGGAGTATATATAGTGTTCTAT TGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCACCCATTTGTTGGGTGCGGAATGATTAGAAGTTCTTGAAaaaaaaaa ]
[+] EMBL BM421811 [ AGCA ACCAGAGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACCGTGGAAGCAAATTCCCGGACTTTGAGTAGAGACATCGCATTCGTGGCAAGTTTGAGCTTTCTTTGCGTTGTGACAACTTTGAGAAACC AC AATCCTGAACCGTAAAGC A TGCCATATGTCAGGATTTAGCAT CCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACACGCAAGGAGTATATATAGTGTTCTAT TGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCACC ATTTGTTGGGTGCGGAATGATTAGAAGTTCTTGAATTGCTCTTATCTAGGCGTTTTTGTGCATGTTGAGTGTAAGATACTCGC AC AAAGGAGCTACTCGTAATAAACACAGGCA TTCGTTGCTAAAAAAAA ]
[+] EMBL BI812119 [ AACCCACCAAATCCT AACCGTAAAGCCAAACCTTCCAATATGTCAGGATTTAGCATCCCTTTTCCACGGC TGTTGTGTTAATATCTATACA CAAGGAGTATATATAGTGTTCTATCTGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCACCAATTTGTTGGGTGCGGAATGATTAGAAGTTCTTGAATTGCTCTTATCTAGGCGTTTTTGTGCATGTTGAGTGTAAGATACTCGCAACAAAAGGAGCTA TCGTAATAAACACAGGCATTTCGTTGCTAAAAAAAAAA]
consensusID : consensus_12345#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 714 fasta sequence
[TTGTTGGCCGAGCTCTTGTGGGTGCAGTTCGCTCTACGACCTTTTTTGTCTGCTTTTGTTACATTCTTCCAGGCTGCCATCTGTTTGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGTCTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTACTTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATATTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAAGCAAAATAAGCAACCCGAGCCCACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCAACCAAGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACCTGGAAGCAATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGCAGTTTGAGCTTTCTTTGCTTGTACACTTTGAAAACCAACAAATCCTAACCGTAAAGCATCCAATATGTCAGGATTTAGCATCCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACACAAGGAGTATATATAGTGTTCAAAAAAAAAA]
[+] EMBL AU077466 [TTGTTGGCCGAGCTCTTGTGGGTGCAGTTCGCTCTACGACCTTTTTTGTCTGCTTTTGTTACATTCTTCCAGGCTGCCATCTGTTTGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGTCTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTACTTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATATTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAAGCAAAATAAGCAACCCGAGCCCACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCAACCAAGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACCTGGAAGCAATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGCAGTTTGAGCTTTCTTTGCTTGTACACTTTGAAAACCAACAAATCCTAACCGTAAAGCATCCAATATGTCAGGATTTAGCATCCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACACAAGGAGTATATATAGTGTTCAAAAAAAAAA]
[+] EMBL CF323581 [ TTGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGTCTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTACTTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATATTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAAGCAAAATAAGCAACCCGAGCCCACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCAACCAAGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACCTGGAAGCAATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGCAGTTTGAGCTTTCTTT ]
[+] EMBL CF281564 [ TGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGTCTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTACTTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATATTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGGAGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAAGCAAAATAAGCAACCCGAGCCCACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGAAGCTGAACGTGCTGGAGCAACCAAGAACACAGCAGGGCCCAGAGAATGGCCTGACATCATCAGAGAAGTACAACCTGGAAGCAATTCCCGGACTTTGAGTAGAGACGTCGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12345#0 CGCCTTCAAAAGTTCTTGGAATCACCAGCTGCAACTTGTTGGC-GAGCTCTTGTGGGTGC 59
consensus_12345#1 -----------------------------------TTGTTGGCCGAGCTCTTGTGGGTGC 25
******** ****************
consensus_12345#0 AGTTCGCTCTACGACCTTTTT-GTCTGCTTTTGTTACATTCTTCCAGGCTGCCATCTGTT 118
consensus_12345#1 AGTTCGCTCTACGACCTTTTTTGTCTGCTTTTGTTACATTCTTCCAGGCTGCCATCTGTT 85
********************* **************************************
consensus_12345#0 TGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGT 178
consensus_12345#1 TGCATCGTAAAGTTGCAACCAAAGACCACAAGTTTGTGTACTGGTTTGCTGGTCTGATGT 145
************************************************************
consensus_12345#0 CTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTAC 238
consensus_12345#1 CTGGTCTTTCTATTCTTTTGGAAAAGAAAGCCAGAAGAGCTGAGCTAGCTCTCTATGTAC 205
************************************************************
consensus_12345#0 TTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATA 298
consensus_12345#1 TTCCCCGCGCAGGGGATTCTTTGTGGTATATATTAATCAACCGCCATCTGCTCCCAAATA 265
************************************************************
consensus_12345#0 TTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGG 358
consensus_12345#1 TTAAAAACGCTGAGGTGGCTCTTTTCTGCATGTGCATGGGGGGAATCATGTATTTCCTGG 325
************************************************************
consensus_12345#0 AGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAA 418
consensus_12345#1 AGTATGAGCCAGATACCATGGCTCCATTCCTCAGAGGACTCATCAGACGGTTCCTGGCAA 385
************************************************************
consensus_12345#0 GCAAAATAAGCAACCCGAGCCCACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGA 478
consensus_12345#1 GCAAAATAAGCAACCCGAGCCCACCGCCAAATCCCAATGCCTCCTACTCCTACCTTCAGA 445
************************************************************
consensus_12345#0 AGCTGAACGTGCTGGAGCAACCAAGAACACAGCAGGGCCCAGAGAATGGCCTGACATCAT 538
consensus_12345#1 AGCTGAACGTGCTGGAGCAACCAAGAACACAGCAGGGCCCAGAGAATGGCCTGACATCAT 505
************************************************************
consensus_12345#0 CAGAGAAGTACAACCTGGAAGCAATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGC 598
consensus_12345#1 CAGAGAAGTACAACCTGGAAGCAATTCCCGGACTTTGAGTAGAGACGTCGCATTCGTGGC 565
************************************************************
consensus_12345#0 AGTTTGAGCTTTCTTTGCTTGTACACTTTGAAAACCAACAAATCCTAACCGTAAAGCATC 658
consensus_12345#1 AGTTTGAGCTTTCTTTGCTTGTACACTTTGAAAACCAACAAATCCTAACCGTAAAGCATC 625
************************************************************
consensus_12345#0 CAATATGTCAGGATTTAGCATCCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACACA 718
consensus_12345#1 CAATATGTCAGGATTTAGCATCCTTTTGCACGGCTGGTGTGGTGTTAATATCTATACACA 685
************************************************************
consensus_12345#0 AGGAGTATATATAGTGTTCTATTGTGTCCCTTGCAGAAGAAAAGGTTAAATAGAGCGCAC 778
consensus_12345#1 AGGAGTATATATAGTGTTCAAAAAAAAAA------------------------------- 714
******************* *
consensus_12345#0 CAATTTGTTGGGTGCGGAATGATTAGAAGTTCTTGAATTGCTCTTATCTAGGCGTTTTTG 838
consensus_12345#1 ------------------------------------------------------------
consensus_12345#0 TGCATGTTGAGTGTAAGATACTCGCAACAAAAGGAGCTATCGTAATAAACACAGGCATTC 898
consensus_12345#1 ------------------------------------------------------------
consensus_12345#0 GTTGCTAAAAAAAAAA 914
consensus_12345#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||