These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1685 fasta sequence [CCACTCCCGCTTCCGACACATCGCCAACCATGAGCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAATCCCCACCTCTCTCGGCCGCCTCTTCCACCTCCGCCCCACCCCGAACCCCTCCCGGAACCTTAGCGGCAGCTCAGCGCAACCCCTCCTCCGCCTCAGCTACCACCCACGCCTCACGCTCTCTCGCCGCATGGAGGCGCCGGCGGCGATCGCCGACTCCCACGGCGGCGGCGACCTGAGCGCGTCCGCGGTCGGCGCGGAGGCGCTGGGCGCCGTCGCCGCTCCGGATTTCGATGTGGAGATGAAGGAGCCTAGCGTGGCGACGATACTGACGAGCTTCGAGAACTCGTTCGATGGGTTCGGGTCTATGAGCACGCCGCTGTACCAGACGGCCACGTTTAAGCAGCCTTCAGCAACCGATAATGGACCTTATGATTACACTAGAAGTGGTAACCCTACACGTGATGTTCTCCAAAGCCTTATGGCTAAGCTTGAGAAGGCGGATCAGGCATTCTGCTTCACCAGTGGGATGGCAGCACTAGCTGCAGTAACACACCTCCTTAAGTCTGGACAAGAAATAGTTGCTGGAGAGGACATATATGGTGGCTCAGACCGTCTGCTCTCACAAGTTGCCCCGAGACATGGGATTGTAGTAAAACGAATTGATACAACCAAAATTAGTGAGGTAACTTCTGCAATTGGGCCCTTGACTAAACTAGTATGGCTTGAAAGTCCCACCAATCCCCGTCTACAAATTACTGATATAAAGAAAATAGCAGAGATAGCTCATTACCATGGTGCTCTTGTTTTAGTAGACAACAGCATCATGTCTCCTGTGCTCTCCCGTCCTCTAGAACTTGGAGCAGATATTGTTATGCACTCAGCAACCAAATTTATAGCTGGACATAGCGATCTTATGGCTGGAATTCTTGCGGTGAAGGGTGAAAGCTTGGCTAAAGAGATTGCATTTCTACAAAATGCTGAAGGATCAGGTTTGGCACCATTTGATTGCTGGCTTTGTTTGAGAGGAATCAAAACCATGGCTTTGCGGGTGGAGAAGCAGCAGGCTAATGCTCAGAAGATTGCTGAATTTCTAGCTTCTCATCCAAGAGTAAAGAAAGTGAACTATGCAGGACTTCCTGATCATCCTGGACGATCTCTACACTATTCCCAGGCAAAGGGAGCGGGTTCAGTTCTCAGTTTCCTAACTGGTTCATTAGCTCTCTCAAAACATGTTGTTGAGACCACAAAGTACTTCAATGTAACAGTTAGCTTTGGAAGTGTGAAATCGCTCATTAGCCTGCCATGCTTCATGTCACACGCCAGCATCCCTTCTGCGGTTCGCGAGGAGCGCGGCCTGACAGACGATCTAGT-CAGGATATCGGTTGGAATTGAGGATGCCGACGACCTCATAGCGGATCTTGATCATGCTCTCCGGTCTGGTCCAGCTTAGAGCCTGTGAATTCTGTGCCCTTCCTGTTCGTTA-GGGATG-TA-GATGTGGTCATGTGGGTGCTATCTGTGTGGGTGATTGATTCATTGGTCAACTCAATAAGCTGCTGTGTCATCGAGGGAATAAAGACAATCTATCCCAAATTTTTTAACACCATATGGTGACCAACTGACCATGATAT-GGTCTTAATCAATTGATATTTATAGAAGGTTTCTTTGAACTGCAAAAAAA] [+] EMBL AK119521 [CCACTCCCGCTTCCGACACATCGCCAACCATGAGCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAATCCCCACCTCTCTCGGCCGCCTCTTCCACCTCCGCCCCACCCCGAACCCCTCCCGGAACCTTAGCGGCAGCTCAGCGCAACCCCTCCTCCGCCTCAGCTACCACCCACGCCTCACGCTCTCTCGCCGCATGGAGGCGCCGGCGGCGATCGCCGACTCCCACGGCGGCGGCGACCTGAGCGCGTCCGCGGTCGGCGCGGAGGCGCTGGGCGCCGTCGCCGCTCCGGATTTCGATGTGGAGATGAAGGAGCCTAGCGTGGCGACGATACTGACGAGCTTCGAGAACTCGTTCGATGGGTTCGGGTCTATGAGCACGCCGCTGTACCAGACGGCCACGTTTAAGCAGCCTTCAGCAACCGATAATGGACCTTATGATTACACTAGAAGTGGTAACCCTACACGTGATGTTCTCCAAAGCCTTATGGCTAAGCTTGAGAAGGCGGATCAGGCATTCTGCTTCACCAGTGGGATGGCAGCACTAGCTGCAGTAACACACCTCCTTAAGTCTGGACAAGAAATAGTTGCTGGAGAGGACATATATGGTGGCTCAGACCGTCTGCTCTCACAAGTTGCCCCGAGACATGGGATTGTAGTAAAACGAATTGATACAACCAAAATTAGTGAGGTAACTTCTGCAATTGGGCCCTTGACTAAACTAGTATGGCTTGAAAGTCCCACCAATCCCCGTCTACAAATTACTGATATAAAGAAAATAGCAGAGATAGCTCATTACCATGGTGCTCTTGTTTTAGTAGACAACAGCATCATGTCTCCTGTGCTCTCCCGTCCTCTAGAACTTGGAGCAGATATTGTTATGCACTCAGCAACCAAATTTATAGCTGGACATAGCGATCTTATGGCTGGAATTCTTGCGGTGAAGGGTGAAAGCTTGGCTAAAGAGATTGCATTTCTACAAAATGCTGAAGGATCAGGTTTGGCACCATTTGATTGCTGGCTTTGTTTGAGAGGAATCAAAACCATGGCTTTGCGGGTGGAGAAGCAGCAGGCTAATGCTCAGAAGATTGCTGAATTTCTAGCTTCTCATCCAAGAGTAAAGAAAGTGAACTATGCAGGACTTCCTGATCATCCTGGACGATCTCTACACTATTCCCAGGCAAAGGGAGCGGGTTCAGTTCTCAGTTTCCTAACTGGTTCATTAGCTCTCTCAAAACATGTTGTTGAGACCACAAAGTACTTCAATGTAACAGTTAGCTTTGGAAGTGTGAAATCGCTCATTAGCCTGCCATGCTTCATGTCACACGCCAGCATCCCTTCTGCGGTTCGCGAGGAGCGCGGCCTGACAGACGATCTAGT CAGGATATCGGTTGGAATTGAGGATGCCGACGACCTCATAGCGGATCTTGATCATGCTCTCCGGTCTGGTCCAGCTTAGAGCCTGTGAATTCTGTGCCCTTCCTGTTCGTTA GGGATG TA GATGTGGTCATGTGGGTGCTATCTGTGTGGGTGATTGATTCATTGGTCAACTCAATAAGCTGCTGTGTCATCGAGGGAATAAAGACAATCTATCCCAAATTTTTTAACACCATATGGTGACCAACTGACCATGATAT GGTCTTAATCAATTGATATTTATAG ] [+] EMBL CB631828 [ ACACATCGCCAACCATGAGCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAATCCCCACCTCTCTCGGCCGCCTCTTCCACCTCCGCCCCACCCCGAACCCCTCCCGGAACCTTAGCGGCAGCTCAGCGCAACCCCTCCTCCGCCTCAGCTACCACCCACGCCTCACGCTCTCTCGCCGCATGGAGGCGCCGGCGGCGATCGCCGACTCCCACGGCGGCGGCGACCTGAGCGCGTCCGCGGTCGGCGCGGAGGCGCTGGGCGCCGTCGCCGCTCCGGATTTCGATGTGGAGATGAAGGAGCCTAGCGTGGCGACGATACTGACGAGCTTCGAGAACTCGTTCGATGGGTTCGGGTCTATGAGCACGCCGCTGTACCAGACGGCCACGTTTAAGCAGCCTTCAGCAACCGATAATGGACCTTATGATTACACTAGAAGTGGTAACCCTACACGTGATGTTCTCCAAAGCCTTATGGCTAAGCTTGAGAAGGCGGATCAGGCATTCTGCTTCACCAGTGGGATGGCAGCACTAGCTGCAGTAACACACCTCCTTAAGTCTGGACAAGAAATAGTTGCTGGAGAGGACATATATGGTGGCTCAGACCGTCTGCTCTCACAAGTTGCCCCGAGACATGGGATTGTAGTAAAACGAATTGATACAACCAAAATTAGTGAGGTAACTTCTGCAATTGGGCCCTTGACTAAACTAGTATGGCTTGAAAGTCCCACCAATCCCCGTCTACAAAT ] [+] EMBL CA757379 [ TGAGGTAACTTCTGCAATTGGGCCCTTGACTAAACTAGTATGGCTTGAAAGTCCCACCAATCCCCGTCTACAAATTACTGATATAAAGAAAATAGCAGAGATAGCTCATTACCATGGTGCTCTTGTTTTAGTAGACAACAGCATCATGTCTCCTGTGCTCTCCCGTCCTCTAGAACTTGGAGCAGATATTGTTATGCACTCAGCAACCAAATTTATAGCTGGACATAGCGATCTTATGGCTGGAATTCTTGCGGTGAAGGGTGAAAGCTTGGCTAAAGAGATTGCATTTCTACAAAATGCTGAAGGATCAGGTTTGGCACCATTTGATTGCTGGCTTTGTTTGAGAGGAATCAAAACCATGGCTTTGCGGGTGGAGAAGCAGCAGGCTAATGCTCAGAAGATTGCTGAATTTCTAGCTTCTCATCCAAGAGTAAAGAAAGTGAACTACGCAGGACTTCCTGATCATCCTGGACGATCTCTACACTATTCCCAGGCAAAGGGAGCGGGTTCAGTTCTCAGTTTCCTAACTGGTTCATTAGCTCTCTCANAACATGTTGTTGAGACCACAAAGTACTTCAATGTAACAGTTAGCTTTGGAAGTGTGAAATCGCTCATTAGCCTGCCATGCTTCATGTCACACGCCAGCATCCCTTCTG ] [-] EMBL CB631829 [ TGTTATGCACTCAGCAACCAAATTTATAGCTGGACATAGCGATCTTATGGCTGGAATTCTTGCGGTGAAGGGTGAAAGCTTGGCTAAAGAGATTGCATTTCTACAAAATGCTGAAGGATCAGGTTTGGCACCATTTGATTGCTGGCTTTGTTTGAGAGGAATCAAAACCATGGCTTTGCGGGTGGAGAAGCAGCAGGCTAATGCTCAGAAGATTGCTGAATTTCTAGCTTCTCATCCAAGAGTAAAGAAAGTGAACTATGCAGGACTTCCTGATCATCCTGGACGATCTCTACACTATTCCCAGGCAAAGGGAGCGGGTTCAGTTCTCAGTTTCCTAACTGGTTCATTAGCTCTCTCAAAACATGTTGTTGAGACCACAAAGTACTTCAATGTAACAGTTAGCTTTGGAAGTGTGAAATCGCTCATTAGCCTGCCATGCTTCATGTCACACGCCAGCATCCCTTCTGCGGTTCGCGAGGAGCGCGGCCTGACAGACGATCTAGT CAGGATATCGGTTGGAATTGAGGATGCCGACGACCTCATAGCGGATCTTGATCATGCTCTCCGGTCTGGTCCAGCTTAGAGCCTGTGAATTCTGTGCCCTTCCTGTTCGTTA GGGATG TA GATGTGGTCATGTGGGTGCTATCTGTGTGGGTGATTGATTCATTGGTCAACTCAATAAGCTGCTGTGTCATCGAGGGAATAAAGACAATCTATCCCAAATTTTTTAACACCATATGGTGACCAACTGACCATGATAT GGTCTTAAGCAATTGATATTTATAGAAGGTTTCTTTGAACTG ] [+] EMBL OS3066A [ TGAATTTCTAGCTTCTCATCCAAGAGTAAAGAAAGTGAACTATGCAGGACTTNCTGATCATCCTGGACGATCTCTACACTATTCCCAGGCAAAGGGAGCGGGTTCAGTTCTCAGTTTCCTAACTGGTTCATTAGCTCTCTCAAAACATGTTGTTGAGACCACAAAGTACTTCAATGTAACAGTTAGCTTTGGAAGTGTGAAATCGCTCATTAGCCTGCCATGCTTCATGTCACACGCCAGCATCCCTTCTGCGGTTCGCGAGGAGCGCGGCCTGACAGACGATCTAGT CAGGATATCGGTTGGAATTGAGGATGCCGACGACCTCATAGCGGATCTTGATCATGCTCTNCGGTCTGGTCCAGCTTAGAGCCTGTGAATTCTGT ] [+] EMBL BM422053 [ CATCCAAGAGTAAAGAAAGTGAACTATGCAGGACTTCCTGATCATCCTGGACGATCTCTACACTATTCCCAGGCAAAGGGAGCGGGTTCAGTTCTCAGTTTCCTAACTGGTTCATTAGCTCTCTCNAAACATGTTGTTGAGACCACCAAGTACTTCAATGTAACAGTTAGCTTTGGAAGTGTGAAATCGCTCATTAGCCTGCCATGCTTCATGTCACACGCCAGCATCCCTTCTGCGGTTCGCGAGGAGCGCGGCCTGACAGACGATCTAGT CAGGATATCGGTTGGAATTGAGGATGCCGACGACCTCATAGCGGATCTTGATCATGCTCTCCGGTCTGGTCCAGCTTAGAGCCTGTGAATTCTGTGCCCTTCCTGTTCGTTACGGGATGCTACGATGTGGTCATGTGGGTGCTATCTGTGTGGGTGATTGATTCATTGGTCAACTCAATAAGCTGCTGTGTCATCGAGGGAATAAAGAC ATCTATCCCAAATTTTTTAACACCATATGGTGACC ACTGACCATGATATGGGTCTTACCCCCTTGATATTTATAGAAGGTTTCTTTGAAaaa ] [+] EMBL AU082557 [ ACAGTTAGCTTTGGAAGTGTGAAATCGCTCATTAGCCTGCCATGCTTCATGTCACACGCCAGCATCCCTTCTGCGGTTCGCGAGGAGCGCGGCCTGACAGACGATCTAGT CAGGATATCGGTTGGAATTGAGGATGCCGACGACCTCATAGCGGATCTTGATCATGCTCTCCGGTCTGGTCCAGCTTAGAGCCTGTGAATTCTGTGCCCTTCCTGTTCGTTA GGGATG TA GATGTGGTCATGTGGGTGCTATCTGTGTGGGTGATTGATTCATTGGTCAACTCAATAAGCTGCTGTGTCCTCGAGGGAATAAAGACAATCTATCCCAAATTTTTTAACACCATATGGTGACCAACTGACCATGATAT GGTCTTAATCAATTGATATTTATAGAAGGTTTCTTTGAACTGCAAAAAAA] [+] EMBL OSR1067A [ ACAGTTAGCTTTGGAAGTGTGAAATCGCTCATTAGCCTGCCATGCTTCATGTCACACGCCAGCATCCCTTCTGCGGTTCGCGAGGAGCGCGGCCTGACAGACGATCTAGT CAGGATATCGGTTGGAATTGAGGATGCCGACGACCTCATAGCGGATCTTGATCATGCTCTCCGGTCTGGTCCAGCTTAGAGCCTGTGAATTCTGTGCCCTTCCTGTTCGTTA GGGATG TA GATGTGGTCATGTGGGTGCTATCTGTGTGGGTGATTGATTCATTGGTCAACTCAATAAGCTGCTGTGTCCTCGAGGGAATAAAGACAATCTATCC ] [+] EMBL OSR08451A [ ACAGTTAGCTTTGGAAGTGTGAAATCGCTCATTAGCCTGCCATGCTTCATGTCACACGCCAGCATCCCTTCTGCGGTTCGCGAGGAGCGCGGCCTGACAGACGATCTAGT CAGGATATCGGTTGGAATTGAGGATGCCGACGACCTCATAGCGGATCTTGATCATGCTCTCCGGTCTGGTCCAGCTTAGAGCCTGTNAATTCTGTGCCCTTCCTGTTCGTTA GGGATG TA GATGTGG ] [+] EMBL AU082558 [ CTAGTCCAGGANATCGGTTGGAATTGAGGATGCCGACGACCTNATAGCGGATCTTGATCATGCTCTCCGGTNTGGTCCAGCTTAGAGCCTGTGAATTCTGTGCCCTTCCTGTTCGTTA GGGATG TA GATGTGGTCATGTGGGTGCTATCTGTGTGGGTGATTGATTCATTGGTCAACTCAATAAGCTGCTGTGTCCTCGAGGGAATAAAGACAATCTATCCCAAATTTTTTAACACCATATGGTGACCAACTGACCATGATAT GGTCTTAATCAATTGATATTTATAGAAGGTTTCTTTGAACTGCAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||